# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 274 MipZ PF09140.6 261 6.7e-11 31.3 2.7 1 1 1.6e-09 1.6e-08 23.5 2.2 6 132 31 180 24 208 0.65 # 1726 # 2547 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.271 1_2 - 274 YhjQ PF06564.7 244 3.2e-06 16.2 0.0 1 1 1.4e-06 1.4e-05 14.1 0.0 10 145 34 174 26 182 0.74 # 1726 # 2547 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.271 1_6 - 581 DUF87 PF01935.12 229 1.2e-05 14.8 2.0 1 1 4e-05 0.0004 9.9 2.0 19 217 201 372 188 379 0.70 # 5772 # 7514 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 1_4 - 655 DNA_methylase PF00145.12 335 2.8e-82 266.0 1.4 1 2 3.8e-71 3.8e-70 226.2 0.3 1 186 2 190 2 211 0.89 # 2841 # 4805 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.276 1_4 - 655 DNA_methylase PF00145.12 335 2.8e-82 266.0 1.4 2 2 5.4e-14 5.4e-13 38.3 0.0 280 334 228 282 203 283 0.86 # 2841 # 4805 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.276 1_2 - 274 ArsA_ATPase PF02374.10 305 9.4e-10 27.5 0.0 1 1 2.1e-10 2.1e-09 26.4 0.0 8 53 33 78 26 88 0.89 # 1726 # 2547 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.271 2_2 - 307 RNA_pol_Rpb2_7 PF04560.15 82 8.1e-05 12.6 0.1 1 1 2.9e-05 0.00029 10.8 0.1 34 75 214 255 190 261 0.85 # 956 # 1876 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=5bp;gc_cont=0.325 1_2 - 274 VirC1 PF07015.6 231 6.7e-05 11.7 0.0 1 1 1.8e-05 0.00018 10.3 0.0 5 41 29 65 25 90 0.82 # 1726 # 2547 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.271 1_2 - 274 Fer4_NifH PF00142.13 273 2.5e-08 23.0 2.3 1 3 3.5e-08 3.5e-07 19.3 0.0 5 56 31 82 26 97 0.78 # 1726 # 2547 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.271 1_2 - 274 Fer4_NifH PF00142.13 273 2.5e-08 23.0 2.3 2 3 0.074 0.74 -1.5 0.0 105 127 187 209 176 210 0.80 # 1726 # 2547 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.271 1_2 - 274 Fer4_NifH PF00142.13 273 2.5e-08 23.0 2.3 3 3 0.0034 0.034 2.9 0.2 194 246 220 272 202 273 0.75 # 1726 # 2547 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.271 1_2 - 274 CbiA PF01656.18 195 2.4e-30 95.0 0.6 1 1 3.3e-31 3.3e-30 94.6 0.6 2 179 29 228 28 247 0.75 # 1726 # 2547 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.271 1_6 - 581 TraG-D_C PF12696.2 128 3.6e-18 55.4 0.0 1 1 7.3e-19 7.3e-18 54.4 0.0 1 127 440 556 440 557 0.89 # 5772 # 7514 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 1_2 - 274 AAA_31 PF13614.1 157 2.8e-13 39.7 0.3 1 2 2.4e-13 2.4e-12 36.7 0.0 9 149 34 177 27 182 0.73 # 1726 # 2547 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.271 1_2 - 274 AAA_31 PF13614.1 157 2.8e-13 39.7 0.3 2 2 0.043 0.43 0.1 0.0 105 123 183 204 177 239 0.65 # 1726 # 2547 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.271 1_4 - 655 Met_10 PF02475.11 200 7.8e-08 21.7 0.0 1 2 1.8e-06 1.8e-05 14.0 0.0 106 169 5 67 3 142 0.84 # 2841 # 4805 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.276 1_4 - 655 Met_10 PF02475.11 200 7.8e-08 21.7 0.0 2 2 0.00099 0.0099 5.1 0.0 4 58 522 576 519 583 0.87 # 2841 # 4805 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.276 1_6 - 581 AAA_10 PF12846.2 304 2.6e-15 46.2 0.0 1 1 3.7e-16 3.7e-15 45.7 0.0 4 300 208 518 205 522 0.79 # 5772 # 7514 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 1_6 - 581 TrwB_AAD_bind PF10412.4 386 1.9e-16 49.2 0.0 1 2 4.4e-06 4.4e-05 11.8 0.0 16 52 206 242 195 269 0.86 # 5772 # 7514 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 1_6 - 581 TrwB_AAD_bind PF10412.4 386 1.9e-16 49.2 0.0 2 2 2.5e-13 2.5e-12 35.6 0.0 240 373 436 563 292 577 0.88 # 5772 # 7514 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/28577dda-55ec-451d-98a4-5120bb7fe3db # Target file: checkm_output/bins/pGCA_000833315.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000833315.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/28577dda-55ec-451d-98a4-5120bb7fe3db checkm_output/bins/pGCA_000833315.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:43:01 2020 # [ok]