# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_17 - 92 ATP_bind_3 PF01171.15 182 0.0016 12.4 0.0 1 1 5.5e-06 0.0017 12.4 0.0 3 27 23 47 21 87 0.84 # 12070 # 12345 # 1 # ID=3_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.359 3_33 - 364 UPF0020 PF01170.13 180 0.0001 16.4 0.1 1 1 1.8e-06 0.00055 14.0 0.1 31 152 35 146 20 162 0.77 # 29486 # 30577 # 1 # ID=3_33;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 2_62 - 653 Seryl_tRNA_N PF02403.17 108 0.021 9.4 97.1 1 7 0.00011 0.035 8.7 10.6 41 100 225 287 218 294 0.70 # 56999 # 58957 # 1 # ID=2_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 2_62 - 653 Seryl_tRNA_N PF02403.17 108 0.021 9.4 97.1 2 7 0.0019 0.58 4.7 14.1 18 99 360 443 354 448 0.68 # 56999 # 58957 # 1 # ID=2_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 2_62 - 653 Seryl_tRNA_N PF02403.17 108 0.021 9.4 97.1 3 7 0.0017 0.53 4.8 17.3 26 99 401 474 376 478 0.56 # 56999 # 58957 # 1 # ID=2_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 2_62 - 653 Seryl_tRNA_N PF02403.17 108 0.021 9.4 97.1 4 7 4.3e-05 0.013 10.0 11.1 37 103 477 544 475 546 0.95 # 56999 # 58957 # 1 # ID=2_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 2_62 - 653 Seryl_tRNA_N PF02403.17 108 0.021 9.4 97.1 5 7 4.8e-05 0.015 9.9 14.9 11 104 496 590 494 600 0.84 # 56999 # 58957 # 1 # ID=2_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 2_62 - 653 Seryl_tRNA_N PF02403.17 108 0.021 9.4 97.1 6 7 0.0065 2 3.0 10.3 33 99 557 625 548 632 0.62 # 56999 # 58957 # 1 # ID=2_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 2_62 - 653 Seryl_tRNA_N PF02403.17 108 0.021 9.4 97.1 7 7 0.0059 1.8 3.1 2.6 43 84 600 642 596 646 0.72 # 56999 # 58957 # 1 # ID=2_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 2_25 - 273 FeoB_N PF02421.13 156 0.0022 11.7 1.0 1 2 0.0084 2.6 1.8 0.0 6 24 12 30 7 37 0.73 # 23448 # 24266 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 2_25 - 273 FeoB_N PF02421.13 156 0.0022 11.7 1.0 2 2 8.4e-05 0.026 8.3 0.3 77 123 158 209 129 221 0.80 # 23448 # 24266 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 1_74 - 289 MipZ PF09140.6 261 2.4e-14 47.5 0.1 1 2 2.7e-11 4.1e-09 30.3 0.1 3 56 9 62 7 86 0.90 # 65149 # 66015 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_74 - 289 MipZ PF09140.6 261 2.4e-14 47.5 0.1 2 2 1.2e-06 0.00018 15.1 0.0 76 125 120 169 88 179 0.82 # 65149 # 66015 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.317 2_25 - 273 MipZ PF09140.6 261 0.00061 13.4 0.0 1 2 2.4e-05 0.0037 10.8 0.0 11 134 16 134 6 142 0.65 # 23448 # 24266 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 2_25 - 273 MipZ PF09140.6 261 0.00061 13.4 0.0 2 2 0.0063 0.97 2.9 0.0 41 129 82 168 62 170 0.62 # 23448 # 24266 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 1_74 - 289 YhjQ PF06564.7 244 1.3e-07 25.7 0.0 1 1 3.2e-09 9.9e-07 22.8 0.0 10 149 15 174 8 180 0.72 # 65149 # 66015 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.317 2_26 - 478 AAA_2 PF07724.9 171 0.0013 13.2 1.4 1 2 0.024 7.2 0.9 0.0 4 45 184 225 183 234 0.85 # 24283 # 25716 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 2_26 - 478 AAA_2 PF07724.9 171 0.0013 13.2 1.4 2 2 3.4e-05 0.01 10.2 0.0 2 42 234 276 233 282 0.84 # 24283 # 25716 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 2_46 - 700 DUF87 PF01935.12 229 6.3e-08 27.1 2.7 1 1 1.7e-09 2.6e-07 25.1 0.0 26 102 282 352 280 543 0.63 # 39541 # 41640 # 1 # ID=2_46;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.366 2_26 - 478 DUF87 PF01935.12 229 9.2e-05 16.8 0.5 1 1 1.7e-06 0.00026 15.3 0.1 25 57 237 270 213 274 0.75 # 24283 # 25716 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_24 - 509 NB-ARC PF00931.17 287 0.00012 15.4 3.0 1 2 4.6e-06 0.0014 11.9 0.4 24 76 48 98 38 233 0.85 # 20294 # 21820 # 1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.291 1_24 - 509 NB-ARC PF00931.17 287 0.00012 15.4 3.0 2 2 0.0031 0.94 2.7 0.1 52 96 295 338 281 352 0.79 # 20294 # 21820 # 1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.291 3_62 - 489 AAA_22 PF13401.1 131 8.7e-06 20.4 0.2 1 1 1.2e-05 0.00076 14.1 0.1 4 124 203 305 199 312 0.62 # 53461 # 54927 # 1 # ID=3_62;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_24 - 509 AAA_22 PF13401.1 131 1.1e-05 20.0 4.4 1 1 6e-05 0.0037 11.9 2.7 8 60 47 94 41 277 0.83 # 20294 # 21820 # 1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.291 2_26 - 478 AAA_22 PF13401.1 131 2e-05 19.2 0.0 1 1 9.2e-07 5.6e-05 17.8 0.0 3 69 234 325 231 382 0.85 # 24283 # 25716 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_92 - 444 AAA_22 PF13401.1 131 0.00021 15.9 0.0 1 1 9.5e-06 0.00058 14.5 0.0 2 28 210 236 209 319 0.75 # 80731 # 82062 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.354 1_107 - 304 AAA_22 PF13401.1 131 0.001 13.7 0.1 1 1 6e-05 0.0037 11.9 0.0 6 28 249 271 244 295 0.86 # 93878 # 94789 # 1 # ID=1_107;partial=01;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_74 - 289 ATP_bind_1 PF03029.12 238 2.2e-06 21.8 0.6 1 1 5.8e-08 8.9e-06 19.8 0.6 6 163 17 207 15 251 0.79 # 65149 # 66015 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.317 2_14 - 379 ATP_bind_1 PF03029.12 238 0.0016 12.5 0.2 1 1 2e-05 0.003 11.6 0.2 157 237 155 233 129 234 0.83 # 12403 # 13539 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.322 1_24 - 509 Trp_halogenase PF04820.9 454 0.0008 12.5 0.0 1 1 4.1e-06 0.0012 11.9 0.0 88 165 277 355 273 370 0.91 # 20294 # 21820 # 1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.291 3_62 - 489 AAA_3 PF07726.6 131 0.0014 12.7 0.0 1 1 1e-05 0.0031 11.6 0.0 3 91 207 298 205 306 0.78 # 53461 # 54927 # 1 # ID=3_62;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 3_62 - 489 AAA_17 PF13207.1 121 4.2e-05 18.9 0.4 1 1 1.3e-05 0.00065 15.0 0.0 3 40 207 255 206 279 0.72 # 53461 # 54927 # 1 # ID=3_62;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_74 - 289 AAA_17 PF13207.1 121 5.9e-05 18.4 0.0 1 1 2.1e-05 0.0011 14.3 0.0 9 60 17 75 16 198 0.72 # 65149 # 66015 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.317 2_26 - 478 AAA_17 PF13207.1 121 6.7e-05 18.2 0.3 1 1 5e-06 0.00026 16.3 0.0 2 23 238 259 237 409 0.75 # 24283 # 25716 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_92 - 444 AAA_17 PF13207.1 121 0.00011 17.6 1.4 1 2 0.044 2.3 3.6 0.8 70 100 35 83 6 185 0.64 # 80731 # 82062 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.354 1_92 - 444 AAA_17 PF13207.1 121 0.00011 17.6 1.4 2 2 0.00018 0.0089 11.3 0.0 2 34 215 244 214 346 0.66 # 80731 # 82062 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.354 1_107 - 304 AAA_17 PF13207.1 121 0.00026 16.3 0.4 1 1 2.3e-05 0.0012 14.2 0.0 3 23 251 271 251 297 0.84 # 93878 # 94789 # 1 # ID=1_107;partial=01;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_24 - 509 AAA_17 PF13207.1 121 0.0023 13.2 4.5 1 1 5.4e-05 0.0028 13.0 0.2 2 96 46 153 45 174 0.51 # 20294 # 21820 # 1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.291 1_28 - 198 Adenylsucc_synt PF00709.16 421 0.085 5.9 6.2 1 2 0.00072 0.22 4.5 0.1 285 358 28 99 19 125 0.72 # 24349 # 24942 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.407 1_28 - 198 Adenylsucc_synt PF00709.16 421 0.085 5.9 6.2 2 2 0.0017 0.51 3.3 2.6 154 204 125 175 109 196 0.59 # 24349 # 24942 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.407 1_24 - 509 Miro PF08477.8 119 0.00067 14.7 0.1 1 1 2e-05 0.0031 12.5 0.0 1 74 45 108 45 117 0.72 # 20294 # 21820 # 1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.291 1_107 - 304 Miro PF08477.8 119 0.001 14.1 0.7 1 1 1.9e-05 0.0029 12.6 0.1 3 46 251 294 250 303 0.72 # 93878 # 94789 # 1 # ID=1_107;partial=01;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 2_25 - 273 MobB PF03205.9 140 0.00039 14.6 0.0 1 1 6.1e-06 0.00093 13.4 0.0 8 38 14 44 7 106 0.86 # 23448 # 24266 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 1_74 - 289 MobB PF03205.9 140 0.0021 12.3 0.1 1 1 3.1e-05 0.0047 11.1 0.1 9 46 16 51 8 64 0.88 # 65149 # 66015 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.317 3_6 - 190 AAA_4 PF04326.9 122 1.2e-20 68.4 1.1 1 1 5.5e-23 1.7e-20 67.9 1.1 1 122 31 169 31 169 0.94 # 4264 # 4833 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.309 1_74 - 289 ArsA_ATPase PF02374.10 305 5.8e-08 26.6 0.2 1 1 2.4e-09 3.6e-07 23.9 0.2 8 137 14 153 7 156 0.63 # 65149 # 66015 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.317 2_25 - 273 ArsA_ATPase PF02374.10 305 0.00071 13.1 0.3 1 1 9.7e-06 0.0015 12.1 0.1 12 38 17 43 9 147 0.76 # 23448 # 24266 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 3_62 - 489 PhoH PF02562.11 205 2.4e-07 24.7 0.5 1 2 1e-05 0.0031 11.2 0.0 5 40 187 224 183 238 0.79 # 53461 # 54927 # 1 # ID=3_62;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 3_62 - 489 PhoH PF02562.11 205 2.4e-07 24.7 0.5 2 2 9.2e-06 0.0028 11.4 0.1 117 170 267 322 242 342 0.74 # 53461 # 54927 # 1 # ID=3_62;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 2_26 - 478 MCM PF00493.18 331 6.8e-05 16.2 0.0 1 1 5.2e-07 0.00016 15.0 0.0 53 84 231 262 221 268 0.90 # 24283 # 25716 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 2_26 - 478 T2SE PF00437.15 272 2.8e-46 152.1 0.0 1 1 6.3e-48 4.8e-46 151.3 0.0 5 270 111 391 108 393 0.91 # 24283 # 25716 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_92 - 444 T2SE PF00437.15 272 4e-37 122.0 0.0 1 1 8e-39 6.1e-37 121.4 0.0 10 264 95 352 86 360 0.87 # 80731 # 82062 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.354 3_62 - 489 T2SE PF00437.15 272 0.00056 13.3 0.0 1 1 1.4e-05 0.0011 12.4 0.0 107 162 185 236 170 279 0.72 # 53461 # 54927 # 1 # ID=3_62;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_24 - 509 T2SE PF00437.15 272 0.001 12.5 0.0 1 1 2.4e-05 0.0018 11.6 0.0 121 156 41 71 19 86 0.82 # 20294 # 21820 # 1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.291 2_16 - 493 AAA_26 PF13500.1 199 0.0014 12.8 0.0 1 2 0.093 28 -1.3 0.0 38 64 124 150 93 191 0.67 # 15222 # 16700 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.348 2_16 - 493 AAA_26 PF13500.1 199 0.0014 12.8 0.0 2 2 1.6e-05 0.0048 11.0 0.0 1 34 219 252 219 336 0.86 # 15222 # 16700 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.348 1_24 - 509 Zeta_toxin PF06414.7 201 2.8e-05 17.8 0.0 1 1 7e-07 0.00011 15.9 0.0 7 48 34 77 28 90 0.81 # 20294 # 21820 # 1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.291 1_107 - 304 Zeta_toxin PF06414.7 201 0.00037 14.1 2.0 1 3 0.069 11 -0.4 0.0 135 182 92 133 75 150 0.75 # 93878 # 94789 # 1 # ID=1_107;partial=01;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_107 - 304 Zeta_toxin PF06414.7 201 0.00037 14.1 2.0 2 3 0.0062 0.95 3.0 0.5 98 133 142 178 95 185 0.82 # 93878 # 94789 # 1 # ID=1_107;partial=01;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_107 - 304 Zeta_toxin PF06414.7 201 0.00037 14.1 2.0 3 3 6.2e-05 0.0096 9.5 0.0 20 56 251 287 242 295 0.83 # 93878 # 94789 # 1 # ID=1_107;partial=01;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 3_17 - 92 TIGR02432 TIGR02432 189 0.00019 15.6 0.0 1 1 6.6e-07 0.0002 15.5 0.0 3 27 23 47 21 88 0.84 # 12070 # 12345 # 1 # ID=3_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.359 1_74 - 289 Fer4_NifH PF00142.13 273 1.1e-07 25.8 0.0 1 1 2e-09 3e-07 24.3 0.0 7 49 14 56 9 89 0.86 # 65149 # 66015 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.317 2_25 - 273 Fer4_NifH PF00142.13 273 0.0018 12.0 0.0 1 1 1.7e-05 0.0027 11.4 0.0 2 63 7 70 6 89 0.74 # 23448 # 24266 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 1_24 - 509 Arch_ATPase PF01637.13 234 0.0028 11.8 18.1 1 2 3.8e-05 0.012 9.8 9.7 23 160 46 254 35 257 0.76 # 20294 # 21820 # 1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.291 1_24 - 509 Arch_ATPase PF01637.13 234 0.0028 11.8 18.1 2 2 0.0081 2.5 2.2 0.6 104 141 249 289 245 327 0.78 # 20294 # 21820 # 1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.291 1_24 - 509 AAA_16 PF13191.1 185 2.8e-05 18.6 0.0 1 1 3.5e-06 0.00036 15.0 0.0 25 165 44 230 39 255 0.64 # 20294 # 21820 # 1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.291 1_92 - 444 AAA_16 PF13191.1 185 0.00012 16.6 0.0 1 1 3e-06 0.0003 15.3 0.0 22 49 210 237 199 267 0.81 # 80731 # 82062 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.354 1_74 - 289 AAA_16 PF13191.1 185 0.00028 15.4 0.0 1 1 5.8e-06 0.00059 14.3 0.0 34 84 17 81 15 150 0.66 # 65149 # 66015 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.317 3_7 - 275 AAA_23 PF13476.1 202 1.8e-06 22.9 2.1 1 1 2.3e-08 2.3e-06 22.5 2.1 1 77 5 87 5 246 0.61 # 4833 # 5657 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.288 1_92 - 444 AAA_23 PF13476.1 202 0.00036 15.4 0.3 1 1 3.6e-06 0.00036 15.4 0.3 5 37 191 230 188 236 0.89 # 80731 # 82062 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.354 1_107 - 304 AAA_23 PF13476.1 202 0.0036 12.1 4.4 1 2 0.007 0.72 4.6 1.4 89 167 87 164 6 194 0.49 # 93878 # 94789 # 1 # ID=1_107;partial=01;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_107 - 304 AAA_23 PF13476.1 202 0.0036 12.1 4.4 2 2 0.00049 0.05 8.4 0.1 24 37 252 265 251 271 0.92 # 93878 # 94789 # 1 # ID=1_107;partial=01;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_107 - 304 AAA_18 PF13238.1 129 1.2e-05 20.1 0.6 1 1 1.2e-06 5.2e-05 18.1 0.0 2 39 251 285 251 301 0.68 # 93878 # 94789 # 1 # ID=1_107;partial=01;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 2_26 - 478 AAA_18 PF13238.1 129 4.4e-05 18.3 0.1 1 1 7.6e-06 0.00033 15.5 0.0 1 36 238 280 238 360 0.67 # 24283 # 25716 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_92 - 444 AAA_18 PF13238.1 129 7.7e-05 17.5 2.3 1 1 8.5e-06 0.00037 15.3 0.0 1 68 215 286 215 322 0.64 # 80731 # 82062 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.354 3_62 - 489 AAA_18 PF13238.1 129 0.0011 13.8 1.8 1 1 5.5e-05 0.0024 12.7 0.3 2 67 207 297 207 399 0.74 # 53461 # 54927 # 1 # ID=3_62;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_74 - 289 AAA_18 PF13238.1 129 0.0024 12.7 1.2 1 1 0.00028 0.012 10.4 0.2 8 62 17 78 15 159 0.63 # 65149 # 66015 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_24 - 509 AAA_18 PF13238.1 129 0.0059 11.4 7.7 1 2 0.00077 0.034 9.0 0.0 2 23 47 82 47 153 0.76 # 20294 # 21820 # 1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.291 1_24 - 509 AAA_18 PF13238.1 129 0.0059 11.4 7.7 2 2 0.018 0.77 4.6 0.7 22 81 273 339 256 361 0.74 # 20294 # 21820 # 1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.291 2_46 - 700 AAA_18 PF13238.1 129 0.084 7.7 6.5 1 1 0.002 0.087 7.6 2.8 1 68 282 369 282 486 0.78 # 39541 # 41640 # 1 # ID=2_46;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.366 2_62 - 653 AAA_13 PF13166.1 712 8.3e-05 15.6 88.5 1 3 0.012 3.6 0.3 30.4 307 467 219 384 207 388 0.57 # 56999 # 58957 # 1 # ID=2_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 2_62 - 653 AAA_13 PF13166.1 712 8.3e-05 15.6 88.5 2 3 1.6e-06 0.00048 13.1 41.5 276 471 330 520 321 530 0.80 # 56999 # 58957 # 1 # ID=2_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 2_62 - 653 AAA_13 PF13166.1 712 8.3e-05 15.6 88.5 3 3 3.1e-06 0.00096 12.1 16.8 291 402 529 643 525 646 0.89 # 56999 # 58957 # 1 # ID=2_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.287 1_74 - 289 CbiA PF01656.18 195 6.5e-34 111.5 0.0 1 1 5.2e-36 8e-34 111.2 0.0 1 194 9 246 9 247 0.80 # 65149 # 66015 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.317 2_25 - 273 CbiA PF01656.18 195 1.6e-11 38.4 0.0 1 1 1.6e-13 2.5e-11 37.8 0.0 1 169 8 212 8 227 0.73 # 23448 # 24266 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 2_26 - 478 IIGP PF05049.8 376 0.00012 15.5 0.2 1 2 0.005 1.5 1.9 0.2 145 249 24 137 7 143 0.67 # 24283 # 25716 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 2_26 - 478 IIGP PF05049.8 376 0.00012 15.5 0.2 2 2 9.2e-06 0.0028 10.9 0.0 22 55 222 255 205 288 0.79 # 24283 # 25716 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 3_30 - 235 Ribosomal_S13 PF00416.17 107 0.0013 13.7 1.0 1 1 6.1e-06 0.0019 13.2 0.2 33 89 62 119 25 124 0.72 # 27504 # 28208 # -1 # ID=3_30;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.295 3_33 - 364 Methyltransf_25 PF13649.1 101 2.8e-05 19.0 0.2 1 1 3.2e-07 9.8e-05 17.2 0.0 3 73 38 103 36 134 0.84 # 29486 # 30577 # 1 # ID=3_33;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 3_62 - 489 AAA_14 PF13173.1 128 3.8e-07 24.6 3.3 1 2 2.2e-09 6.8e-07 23.7 0.2 4 85 205 295 203 304 0.69 # 53461 # 54927 # 1 # ID=3_62;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 3_62 - 489 AAA_14 PF13173.1 128 3.8e-07 24.6 3.3 2 2 0.06 18 -0.3 0.0 52 77 358 381 312 387 0.64 # 53461 # 54927 # 1 # ID=3_62;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_24 - 509 SRPRB PF09439.5 181 2.4e-05 18.1 0.1 1 1 1.4e-07 4.2e-05 17.3 0.1 4 103 44 138 41 213 0.83 # 20294 # 21820 # 1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.291 3_7 - 275 AAA_29 PF13555.1 62 0.00039 14.4 0.0 1 1 4.4e-06 0.00067 13.7 0.0 2 54 4 55 3 62 0.89 # 4833 # 5657 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.288 1_107 - 304 AAA_29 PF13555.1 62 0.0015 12.6 0.1 1 1 1.9e-05 0.0028 11.7 0.1 26 40 250 264 240 283 0.86 # 93878 # 94789 # 1 # ID=1_107;partial=01;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 3_62 - 489 AAA PF00004.24 132 4e-05 18.3 0.0 1 1 6.8e-07 0.0001 17.0 0.0 3 74 208 285 206 298 0.69 # 53461 # 54927 # 1 # ID=3_62;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_24 - 509 AAA PF00004.24 132 8.5e-05 17.3 7.5 1 2 4.2e-05 0.0064 11.2 0.4 2 31 47 79 46 187 0.72 # 20294 # 21820 # 1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.291 1_24 - 509 AAA PF00004.24 132 8.5e-05 17.3 7.5 2 2 0.0006 0.092 7.5 1.6 48 116 206 278 185 296 0.69 # 20294 # 21820 # 1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.291 2_9 - 436 PGK PF00162.14 384 0.00022 14.3 0.1 1 1 1.4e-06 0.00044 13.3 0.1 98 156 170 225 154 237 0.80 # 7870 # 9177 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.344 3_17 - 92 PAPS_reduct PF01507.14 174 1.1e-05 19.8 0.0 1 1 4.4e-08 1.4e-05 19.5 0.0 3 51 23 80 21 89 0.76 # 12070 # 12345 # 1 # ID=3_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.359 2_26 - 478 Sigma54_activat PF00158.21 168 2.2e-05 18.4 0.0 1 1 5.4e-07 5.6e-05 17.2 0.0 4 50 217 263 214 283 0.78 # 24283 # 25716 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_92 - 444 Sigma54_activat PF00158.21 168 7e-05 16.8 0.0 1 1 1.4e-06 0.00014 15.8 0.0 15 51 205 241 195 258 0.81 # 80731 # 82062 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.354 1_24 - 509 Sigma54_activat PF00158.21 168 0.00011 16.2 0.0 1 1 2.1e-06 0.00021 15.3 0.0 22 56 43 77 25 87 0.86 # 20294 # 21820 # 1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.291 1_74 - 289 MMR_HSR1 PF01926.18 116 0.00049 14.5 0.0 1 1 3.3e-05 0.0099 10.3 0.0 10 58 18 154 15 228 0.61 # 65149 # 66015 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.317 3_33 - 364 N6_Mtase PF02384.11 311 1.7e-06 21.8 0.7 1 1 5.4e-08 1.6e-05 18.5 0.7 26 180 10 140 5 264 0.70 # 29486 # 30577 # 1 # ID=3_33;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 2_26 - 478 DUF258 PF03193.11 161 0.00053 13.7 0.0 1 1 1e-05 0.0011 12.7 0.0 5 59 204 259 200 329 0.87 # 24283 # 25716 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_107 - 304 DUF258 PF03193.11 161 0.0015 12.2 0.1 1 1 8.8e-05 0.0089 9.7 0.0 39 59 251 271 244 303 0.83 # 93878 # 94789 # 1 # ID=1_107;partial=01;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_74 - 289 DUF258 PF03193.11 161 0.0033 11.1 0.0 1 1 6.3e-05 0.0064 10.2 0.0 39 82 11 54 4 68 0.78 # 65149 # 66015 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_101 - 273 TraG-D_C PF12696.2 128 1.9e-18 61.0 1.9 1 1 2.6e-20 2.7e-18 60.6 1.2 31 125 2 87 1 89 0.82 # 88659 # 89477 # 1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 2_6 - 1110 TraG-D_C PF12696.2 128 2.8e-13 44.4 0.9 1 1 1.2e-14 1.2e-12 42.3 0.0 3 125 539 659 538 661 0.84 # 2223 # 5552 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_100 - 612 TraG-D_C PF12696.2 128 0.00024 15.5 0.0 1 1 5.6e-06 0.00057 14.3 0.0 1 18 585 602 585 610 0.91 # 86822 # 88657 # 1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.364 2_25 - 273 AAA_31 PF13614.1 157 1.3e-20 68.4 0.1 1 1 2.1e-22 2.2e-20 67.7 0.1 1 152 6 171 6 174 0.86 # 23448 # 24266 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 1_74 - 289 AAA_31 PF13614.1 157 1.1e-10 36.1 1.0 1 2 9.3e-11 9.5e-09 29.8 0.6 3 134 9 159 8 178 0.72 # 65149 # 66015 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_74 - 289 AAA_31 PF13614.1 157 1.1e-10 36.1 1.0 2 2 0.08 8.2 0.8 0.0 80 121 159 200 153 219 0.84 # 65149 # 66015 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.317 2_16 - 493 AAA_31 PF13614.1 157 5.3e-07 24.2 0.1 1 1 1.1e-08 1.1e-06 23.1 0.1 1 152 219 374 219 379 0.79 # 15222 # 16700 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.348 1_107 - 304 NTPase_1 PF03266.10 168 0.00023 15.4 0.1 1 2 0.072 22 -0.8 0.0 137 167 58 89 35 90 0.68 # 93878 # 94789 # 1 # ID=1_107;partial=01;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_107 - 304 NTPase_1 PF03266.10 168 0.00023 15.4 0.1 2 2 3.4e-06 0.001 13.3 0.1 3 34 251 282 250 304 0.78 # 93878 # 94789 # 1 # ID=1_107;partial=01;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 3_62 - 489 DnaB_C PF03796.10 259 0.00022 14.6 0.3 1 2 0.0011 0.34 4.2 0.0 19 49 203 233 195 238 0.83 # 53461 # 54927 # 1 # ID=3_62;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 3_62 - 489 DnaB_C PF03796.10 259 0.00022 14.6 0.3 2 2 6.7e-05 0.02 8.2 0.2 93 156 262 324 234 339 0.75 # 53461 # 54927 # 1 # ID=3_62;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 3_33 - 364 Methyltransf_26 PF13659.1 117 2.4e-14 47.9 0.0 1 1 1.6e-16 4.8e-14 46.9 0.0 4 116 36 144 34 145 0.90 # 29486 # 30577 # 1 # ID=3_33;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 2_53 - 102 2-Hacid_dh_C PF02826.14 178 0.00067 13.3 0.1 1 1 4e-06 0.0012 12.5 0.1 37 97 4 55 1 59 0.84 # 49017 # 49322 # 1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 3_62 - 489 AAA_30 PF13604.1 196 8.2e-08 26.5 0.0 1 1 2.5e-09 7.6e-07 23.3 0.0 2 137 187 313 186 343 0.80 # 53461 # 54927 # 1 # ID=3_62;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 2_26 - 478 FtsK_SpoIIIE PF01580.13 205 4.6e-05 17.4 0.0 1 1 3.1e-07 9.6e-05 16.4 0.0 32 58 229 255 208 260 0.77 # 24283 # 25716 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 3_33 - 364 MTS PF05175.9 170 1.4e-07 25.5 0.0 1 1 8.5e-10 2.6e-07 24.6 0.0 24 140 23 143 8 165 0.74 # 29486 # 30577 # 1 # ID=3_33;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_24 - 509 ABC_tran PF00005.22 137 0.00063 14.5 0.0 1 1 1.6e-05 0.0017 13.2 0.0 11 61 43 101 37 181 0.74 # 20294 # 21820 # 1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.291 1_92 - 444 ABC_tran PF00005.22 137 0.00071 14.4 0.0 1 1 1.7e-05 0.0018 13.1 0.0 9 51 210 252 203 348 0.78 # 80731 # 82062 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.354 1_107 - 304 ABC_tran PF00005.22 137 0.0023 12.7 0.2 1 1 2.3e-05 0.0023 12.7 0.2 16 32 252 268 242 275 0.89 # 93878 # 94789 # 1 # ID=1_107;partial=01;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 3_51 - 215 DNA_mis_repair PF01119.14 119 0.00058 13.8 0.0 1 2 1.6e-05 0.0049 10.8 0.0 62 101 54 93 19 105 0.81 # 47896 # 48540 # 1 # ID=3_51;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.375 3_51 - 215 DNA_mis_repair PF01119.14 119 0.00058 13.8 0.0 2 2 0.023 7 0.7 0.0 11 38 178 210 172 214 0.69 # 47896 # 48540 # 1 # ID=3_51;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.375 3_33 - 364 Cons_hypoth95 PF03602.10 183 0.0012 12.8 0.0 1 1 7.9e-06 0.0024 11.7 0.0 99 146 85 129 63 140 0.72 # 29486 # 30577 # 1 # ID=3_33;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 6_1 - 290 UDPG_MGDP_dh_N PF03721.9 185 7.3e-50 163.4 0.6 1 1 3.9e-52 1.2e-49 162.7 0.6 26 185 1 159 1 159 0.96 # 2 # 871 # 1 # ID=6_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.306 2_26 - 478 AAA_19 PF13245.1 76 0.0011 13.2 0.0 1 1 2e-05 0.003 11.8 0.0 5 49 230 272 226 277 0.78 # 24283 # 25716 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 3_62 - 489 AAA_19 PF13245.1 76 0.0012 13.1 0.0 1 1 1.7e-05 0.0026 12.0 0.0 10 27 203 220 196 237 0.79 # 53461 # 54927 # 1 # ID=3_62;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 2_46 - 700 AAA_10 PF12846.2 304 1.7e-49 163.4 0.1 1 1 5.5e-51 2.8e-49 162.6 0.1 1 302 279 638 279 640 0.90 # 39541 # 41640 # 1 # ID=2_46;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.366 1_1 - 334 AAA_10 PF12846.2 304 1.5e-43 143.8 0.1 1 1 3.6e-45 1.8e-43 143.5 0.1 61 301 2 287 1 291 0.88 # 1 # 1002 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.354 1_107 - 304 AAA_10 PF12846.2 304 2.6e-12 41.2 1.1 1 1 8.4e-14 4.3e-12 40.5 0.2 3 56 249 302 247 304 0.96 # 93878 # 94789 # 1 # ID=1_107;partial=01;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 2_6 - 1110 AAA_10 PF12846.2 304 1.4e-10 35.5 0.1 1 2 4.7e-11 2.4e-09 31.5 0.0 3 267 220 578 218 599 0.69 # 2223 # 5552 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 2_6 - 1110 AAA_10 PF12846.2 304 1.4e-10 35.5 0.1 2 2 0.096 4.9 0.9 0.0 249 285 818 854 815 867 0.80 # 2223 # 5552 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_74 - 289 AAA_10 PF12846.2 304 0.00017 15.6 0.2 1 1 4e-06 0.0002 15.3 0.2 11 101 17 127 10 280 0.70 # 65149 # 66015 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_100 - 612 AAA_10 PF12846.2 304 0.0004 14.3 0.1 1 1 1.8e-05 0.00092 13.1 0.1 3 141 178 339 176 427 0.65 # 86822 # 88657 # 1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.364 3_35 - 878 ResIII PF04851.10 184 3.1e-05 18.4 0.8 1 2 0.019 1.5 3.1 0.0 4 122 278 394 275 422 0.71 # 30844 # 33477 # 1 # ID=3_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.368 3_35 - 878 ResIII PF04851.10 184 3.1e-05 18.4 0.8 2 2 4.2e-05 0.0032 11.8 0.0 137 164 527 572 457 595 0.66 # 30844 # 33477 # 1 # ID=3_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.368 2_26 - 478 ResIII PF04851.10 184 0.00018 15.8 0.0 1 1 6.2e-06 0.00047 14.5 0.0 22 64 226 279 196 308 0.78 # 24283 # 25716 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_1 - 334 ResIII PF04851.10 184 0.0006 14.1 0.1 1 1 1.5e-05 0.0012 13.2 0.1 88 170 140 224 111 239 0.66 # 1 # 1002 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.354 1_92 - 444 ResIII PF04851.10 184 0.00079 13.8 0.1 1 1 2.7e-05 0.002 12.4 0.1 22 48 196 234 121 250 0.68 # 80731 # 82062 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.354 3_33 - 364 Methyltransf_31 PF13847.1 152 9.2e-05 16.5 0.0 1 1 5.3e-07 0.00016 15.8 0.0 7 109 36 142 30 181 0.74 # 29486 # 30577 # 1 # ID=3_33;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_1 - 334 Zot PF05707.7 193 4.3e-06 20.8 0.4 1 1 6.9e-08 1.1e-05 19.5 0.1 33 129 146 245 129 246 0.67 # 1 # 1002 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.354 3_62 - 489 Zot PF05707.7 193 0.00045 14.2 0.0 1 1 9.5e-06 0.0015 12.5 0.0 3 97 206 287 204 307 0.82 # 53461 # 54927 # 1 # ID=3_62;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 3_62 - 489 Viral_helicase1 PF01443.13 234 8e-07 23.2 0.0 1 1 5e-09 1.5e-06 22.3 0.0 1 232 206 469 206 471 0.69 # 53461 # 54927 # 1 # ID=3_62;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 3_62 - 489 DUF2075 PF09848.4 352 2.3e-12 41.0 1.6 1 2 4.6e-12 7e-10 32.8 0.5 2 207 204 378 203 390 0.76 # 53461 # 54927 # 1 # ID=3_62;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 3_62 - 489 DUF2075 PF09848.4 352 2.3e-12 41.0 1.6 2 2 0.00045 0.069 6.5 0.0 279 322 416 458 400 479 0.78 # 53461 # 54927 # 1 # ID=3_62;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_24 - 509 DUF2075 PF09848.4 352 0.00019 14.9 0.6 1 1 9.6e-06 0.0015 12.0 0.3 4 75 46 115 43 263 0.79 # 20294 # 21820 # 1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.291 1_54 - 529 SPOUT_MTase PF02590.12 155 0.0019 12.4 0.5 1 2 3.7e-05 0.011 9.9 0.0 13 87 297 373 288 385 0.83 # 46655 # 48241 # 1 # ID=1_54;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_54 - 529 SPOUT_MTase PF02590.12 155 0.0019 12.4 0.5 2 2 0.078 24 -0.9 0.0 15 44 450 479 445 495 0.72 # 46655 # 48241 # 1 # ID=1_54;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_24 - 509 DEAD PF00270.24 169 0.00012 16.1 0.1 1 1 3e-05 0.0023 11.9 0.1 8 132 37 281 32 300 0.60 # 20294 # 21820 # 1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.291 2_6 - 1110 DEAD PF00270.24 169 0.00031 14.8 0.1 1 1 1.8e-05 0.0014 12.6 0.0 18 69 222 298 204 348 0.76 # 2223 # 5552 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_92 - 444 DEAD PF00270.24 169 0.0011 12.9 0.0 1 1 3.3e-05 0.0025 11.8 0.0 10 33 207 231 202 335 0.89 # 80731 # 82062 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.354 2_26 - 478 DEAD PF00270.24 169 0.0015 12.5 0.0 1 1 6.9e-05 0.0053 10.7 0.0 13 56 234 277 222 282 0.79 # 24283 # 25716 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 2_6 - 1110 TrwB_AAD_bind PF10412.4 386 3.4e-10 33.5 0.6 1 1 6.4e-11 3.9e-09 30.0 0.0 169 383 465 678 449 680 0.74 # 2223 # 5552 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_101 - 273 TrwB_AAD_bind PF10412.4 386 2.4e-07 24.1 0.3 1 1 8.9e-09 5.4e-07 23.0 0.3 277 364 5 87 2 102 0.85 # 88659 # 89477 # 1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_100 - 612 TrwB_AAD_bind PF10412.4 386 1.7e-05 18.0 0.0 1 2 4.1e-06 0.00025 14.2 0.0 13 162 174 344 168 355 0.84 # 86822 # 88657 # 1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.364 1_100 - 612 TrwB_AAD_bind PF10412.4 386 1.7e-05 18.0 0.0 2 2 0.031 1.9 1.4 0.0 222 261 558 602 538 610 0.64 # 86822 # 88657 # 1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.364 2_26 - 478 TrwB_AAD_bind PF10412.4 386 5.3e-05 16.4 0.1 1 1 4.3e-06 0.00026 14.1 0.0 14 50 234 272 222 295 0.79 # 24283 # 25716 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_92 - 444 TrwB_AAD_bind PF10412.4 386 0.00017 14.7 0.0 1 1 4.7e-06 0.00029 14.0 0.0 15 62 212 259 206 314 0.75 # 80731 # 82062 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.354 3_62 - 489 AAA_11 PF13086.1 236 0.00098 13.2 0.1 1 1 4.2e-06 0.0013 12.8 0.1 6 44 191 238 187 468 0.83 # 53461 # 54927 # 1 # ID=3_62;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 2_26 - 478 Sigma54_activ_2 PF14532.1 138 3.5e-05 18.4 0.0 1 1 8.5e-07 8.7e-05 17.1 0.0 3 44 217 258 215 277 0.87 # 24283 # 25716 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_24 - 509 Sigma54_activ_2 PF14532.1 138 0.0025 12.4 0.0 1 1 6.8e-05 0.0069 10.9 0.0 25 49 47 71 36 88 0.85 # 20294 # 21820 # 1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.291 1_92 - 444 Sigma54_activ_2 PF14532.1 138 0.0033 12.0 0.0 1 1 9.6e-05 0.0098 10.4 0.0 16 44 207 235 199 261 0.82 # 80731 # 82062 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.354 1_100 - 612 T4SS-DNA_transf PF02534.9 469 1.1e-28 94.5 1.0 1 2 2.9e-25 4.4e-23 76.0 0.4 31 258 164 409 134 414 0.73 # 86822 # 88657 # 1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.364 1_100 - 612 T4SS-DNA_transf PF02534.9 469 1.1e-28 94.5 1.0 2 2 2.2e-07 3.4e-05 17.0 0.0 259 315 539 596 518 603 0.91 # 86822 # 88657 # 1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.364 1_101 - 273 T4SS-DNA_transf PF02534.9 469 3.8e-10 33.3 1.1 1 1 2.5e-12 3.8e-10 33.3 1.1 335 433 3 97 1 127 0.80 # 88659 # 89477 # 1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_74 - 289 ArgK PF03308.11 267 3.2e-05 17.3 0.0 1 1 1.9e-07 5.7e-05 16.5 0.0 38 82 16 59 6 91 0.85 # 65149 # 66015 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.317 2_26 - 478 RNA_helicase PF00910.17 107 0.00017 16.3 0.0 1 1 4.9e-06 0.0005 14.7 0.0 1 31 238 265 238 287 0.77 # 24283 # 25716 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_92 - 444 RNA_helicase PF00910.17 107 0.00035 15.2 0.0 1 1 1.1e-05 0.0011 13.6 0.0 1 75 215 292 215 317 0.75 # 80731 # 82062 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.354 1_24 - 509 RNA_helicase PF00910.17 107 0.00041 15.0 0.4 1 2 0.00055 0.056 8.1 0.1 2 26 47 71 46 88 0.71 # 20294 # 21820 # 1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.291 1_24 - 509 RNA_helicase PF00910.17 107 0.00041 15.0 0.4 2 2 0.02 2.1 3.1 0.0 49 94 215 263 190 269 0.82 # 20294 # 21820 # 1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.291 3_4 - 328 S1 PF00575.18 74 4.5e-05 18.0 5.6 1 3 0.022 6.9 1.4 0.0 20 46 82 119 77 137 0.71 # 2279 # 3262 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.387 3_4 - 328 S1 PF00575.18 74 4.5e-05 18.0 5.6 2 3 5.9e-06 0.0018 12.9 0.6 5 68 156 218 152 221 0.91 # 2279 # 3262 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.387 3_4 - 328 S1 PF00575.18 74 4.5e-05 18.0 5.6 3 3 0.0031 0.94 4.2 0.4 6 27 244 266 240 269 0.88 # 2279 # 3262 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.387 1_107 - 304 AAA_24 PF13479.1 213 0.0023 12.0 0.1 1 1 7.6e-06 0.0023 12.0 0.1 3 27 247 271 245 274 0.85 # 93878 # 94789 # 1 # ID=1_107;partial=01;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_24 - 509 NACHT PF05729.7 166 5.9e-07 23.8 0.1 1 2 8.2e-06 0.0025 12.0 0.0 4 29 47 72 44 85 0.88 # 20294 # 21820 # 1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.291 1_24 - 509 NACHT PF05729.7 166 5.9e-07 23.8 0.1 2 2 7.4e-05 0.023 8.8 0.0 50 100 184 242 177 294 0.69 # 20294 # 21820 # 1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.291 3_62 - 489 AAA_25 PF13481.1 194 0.00033 14.6 0.0 1 1 7.8e-06 0.0008 13.3 0.0 29 58 202 228 186 318 0.78 # 53461 # 54927 # 1 # ID=3_62;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 2_26 - 478 AAA_25 PF13481.1 194 0.00058 13.8 0.0 1 1 1.3e-05 0.0013 12.6 0.0 36 77 238 279 206 281 0.84 # 24283 # 25716 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.372 1_74 - 289 AAA_25 PF13481.1 194 0.0012 12.7 0.0 1 1 7.9e-05 0.008 10.0 0.0 37 73 11 49 5 54 0.84 # 65149 # 66015 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.317 1_74 - 289 AAA_5 PF07728.9 139 0.00012 16.4 0.0 1 1 1.2e-06 0.00019 15.7 0.0 9 67 17 79 15 108 0.86 # 65149 # 66015 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.317 3_62 - 489 AAA_5 PF07728.9 139 0.00049 14.3 0.0 1 1 1.1e-05 0.0016 12.6 0.0 3 94 207 298 206 340 0.72 # 53461 # 54927 # 1 # ID=3_62;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 2_25 - 273 APS_kinase PF01583.15 157 0.00022 15.4 0.0 1 1 1.4e-06 0.00041 14.5 0.0 10 57 14 61 6 71 0.88 # 23448 # 24266 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.370 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/1fd20b3e-d411-4dad-abaa-b8ef6456dafc # Target file: checkm_output/bins/pGCA_000833125.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000833125.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/1fd20b3e-d411-4dad-abaa-b8ef6456dafc checkm_output/bins/pGCA_000833125.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:43:00 2020 # [ok]