# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_14 - 171 BPL_LplA_LipB PF03099.14 125 4.9e-25 79.6 0.0 1 1 1.6e-26 6.6e-25 79.2 0.0 1 125 27 138 27 138 0.91 # 7424 # 7936 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.417 5_3 - 272 Thymidylate_kin PF02223.12 186 0.00017 12.6 0.0 1 1 7.3e-06 0.0003 11.8 0.0 6 52 14 61 13 87 0.87 # 673 # 1488 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.537 5_3 - 272 MipZ PF09140.6 261 1.4e-11 35.6 0.0 1 2 8.7e-10 3.6e-08 24.4 0.0 2 71 5 74 4 93 0.78 # 673 # 1488 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.537 5_3 - 272 MipZ PF09140.6 261 1.4e-11 35.6 0.0 2 2 3.5e-05 0.0014 9.3 0.0 78 126 110 158 87 162 0.85 # 673 # 1488 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.537 5_3 - 272 YhjQ PF06564.7 244 1.2e-15 49.1 0.0 1 1 4.4e-17 1.8e-15 48.5 0.0 2 153 4 166 3 191 0.79 # 673 # 1488 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.537 5_3 - 272 ArsA_ATPase PF02374.10 305 3.3e-09 27.8 1.3 1 1 3.9e-10 1.6e-08 25.5 1.3 9 49 12 52 5 143 0.67 # 673 # 1488 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.537 5_3 - 272 VirC1 PF07015.6 231 2.5e-05 15.0 0.1 1 1 1.1e-06 4.6e-05 14.2 0.1 3 46 5 48 3 75 0.84 # 673 # 1488 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.537 5_3 - 272 Fer4_NifH PF00142.13 273 1.9e-07 22.2 0.4 1 1 9.4e-09 3.9e-07 21.1 0.1 8 51 12 55 8 93 0.81 # 673 # 1488 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.537 5_3 - 272 CbiA PF01656.18 195 2.4e-29 93.8 0.0 1 1 7.3e-31 3e-29 93.4 0.0 2 184 7 224 6 237 0.77 # 673 # 1488 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_13 - 118 rRNA_methylase PF06962.7 140 3.5e-44 141.5 0.1 1 1 9.6e-46 3.9e-44 141.4 0.1 33 140 2 108 1 108 0.99 # 7047 # 7400 # -1 # ID=1_13;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.350 5_3 - 272 AAA_31 PF13614.1 157 1.4e-10 33.0 0.3 1 1 3.7e-11 1.5e-09 29.6 0.3 4 151 7 163 4 168 0.74 # 673 # 1488 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_5 - 84 AAA_30 PF13604.1 196 0.00011 13.5 0.0 1 1 2.7e-06 0.00011 13.5 0.0 47 88 11 52 2 74 0.83 # 1535 # 1786 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.440 5_3 - 272 ArgK PF03308.11 267 0.00041 10.8 0.0 1 1 1.7e-05 0.00071 10.0 0.0 38 72 13 47 2 51 0.87 # 673 # 1488 # -1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.537 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/63aa39dc-4061-479d-a267-41909e4fa617 # Target file: checkm_output/bins/pGCA_000829055.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000829055.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/63aa39dc-4061-479d-a267-41909e4fa617 checkm_output/bins/pGCA_000829055.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:42:29 2020 # [ok]