# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_13 - 352 Seryl_tRNA_N PF02403.17 108 0.0045 8.0 10.0 1 1 8.5e-05 0.0021 9.1 7.4 35 100 103 170 92 174 0.80 # 7839 # 8894 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_12 - 227 IstB_IS21 PF01695.12 178 3.2e-05 14.3 0.1 1 2 0.00022 0.0056 7.0 0.0 44 63 28 47 12 53 0.80 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_12 - 227 IstB_IS21 PF01695.12 178 3.2e-05 14.3 0.1 2 2 0.00081 0.02 5.2 0.0 96 155 147 208 131 213 0.74 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_12 - 227 NB-ARC PF00931.17 287 1.7e-05 14.7 0.4 1 1 2.6e-06 6.5e-05 12.8 0.4 19 57 31 66 19 219 0.75 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_12 - 227 AAA_22 PF13401.1 131 6.4e-08 23.8 0.3 1 1 4.5e-08 1.1e-06 19.7 0.3 5 124 32 200 28 207 0.81 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_12 - 227 AAA_15 PF13175.1 415 8.7e-08 22.4 0.9 1 2 1.8e-05 0.00046 10.2 0.0 13 65 22 76 6 100 0.77 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_12 - 227 AAA_15 PF13175.1 415 8.7e-08 22.4 0.9 2 2 9.1e-06 0.00023 11.2 0.1 371 411 161 201 150 205 0.91 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_12 - 227 AAA_17 PF13207.1 121 4.2e-05 15.3 0.2 1 1 3.4e-06 8.5e-05 14.4 0.2 2 19 34 51 33 123 0.86 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_12 - 227 AAA_21 PF13304.1 303 1.2e-14 45.8 0.3 1 1 3.9e-13 9.7e-12 36.3 0.3 3 298 35 201 33 204 0.83 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_12 - 227 MobB PF03205.9 140 0.00011 12.9 0.1 1 1 1.1e-05 0.00028 11.6 0.1 3 20 34 51 32 54 0.90 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_12 - 227 T2SE PF00437.15 272 1.4e-05 15.0 0.1 1 2 4.4e-05 0.0011 8.8 0.0 108 147 11 50 3 69 0.78 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_12 - 227 T2SE PF00437.15 272 1.4e-05 15.0 0.1 2 2 0.00099 0.025 4.4 0.1 84 155 106 187 88 217 0.76 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_12 - 227 SMC_N PF02463.14 220 1.7e-11 34.7 2.9 1 1 2.5e-11 6.2e-10 29.6 2.9 24 212 31 215 11 221 0.75 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_12 - 227 Arch_ATPase PF01637.13 234 6.1e-05 13.7 0.2 1 1 1.2e-05 0.00031 11.4 0.2 21 83 32 123 21 226 0.53 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_12 - 227 AAA_16 PF13191.1 185 1.3e-06 19.4 0.3 1 1 2e-07 5.1e-06 17.5 0.3 21 51 28 57 17 223 0.62 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_12 - 227 AAA_23 PF13476.1 202 0.00023 12.5 4.2 1 1 2.4e-05 0.00059 11.1 4.2 11 37 22 49 2 223 0.87 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_12 - 227 AAA_18 PF13238.1 129 1.9e-05 15.9 0.0 1 2 1.3e-05 0.00031 12.0 0.0 1 19 34 52 34 122 0.73 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_12 - 227 AAA_18 PF13238.1 129 1.9e-05 15.9 0.0 2 2 0.016 0.4 2.0 0.0 47 91 168 210 140 221 0.77 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_12 - 227 KaiC PF06745.8 227 4.5e-05 13.5 0.4 1 2 0.0012 0.031 4.3 0.0 18 35 30 47 21 56 0.88 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_12 - 227 KaiC PF06745.8 227 4.5e-05 13.5 0.4 2 2 0.00013 0.0034 7.4 0.1 137 183 177 221 165 226 0.77 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_14 - 166 TRM PF02005.11 377 7.1e-05 12.7 0.1 1 1 4.4e-06 0.00011 12.1 0.1 165 192 15 42 8 60 0.87 # 9199 # 9696 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_12 - 227 AAA_29 PF13555.1 62 1e-07 22.4 0.1 1 1 8.9e-09 2.2e-07 21.3 0.1 15 40 24 48 17 52 0.82 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_12 - 227 MMR_HSR1 PF01926.18 116 1.4e-05 16.0 0.7 1 1 4.4e-06 0.00011 13.1 0.7 2 19 34 51 33 224 0.72 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_12 - 227 DUF258 PF03193.11 161 1.3e-07 21.8 0.1 1 2 1.6e-08 4e-07 20.3 0.0 24 55 19 51 3 97 0.85 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_12 - 227 DUF258 PF03193.11 161 1.3e-07 21.8 0.1 2 2 0.064 1.6 -1.2 0.1 54 78 171 195 169 205 0.79 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_12 - 227 AAA_33 PF13671.1 143 2.1e-05 15.4 0.2 1 2 1.5e-05 0.00038 11.3 0.0 2 17 34 49 33 57 0.87 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_12 - 227 AAA_33 PF13671.1 143 2.1e-05 15.4 0.2 2 2 0.011 0.28 2.0 0.0 61 118 151 210 108 220 0.75 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_4 - 160 TUG-UBL1 PF11470.3 65 0.00015 12.7 0.1 1 1 1.1e-05 0.00028 11.8 0.1 5 46 91 133 87 141 0.91 # 1113 # 1592 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_12 - 227 ABC_tran PF00005.22 137 1.9e-35 113.1 0.1 1 1 1.8e-36 4.6e-35 111.9 0.0 1 136 21 169 21 170 0.92 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_12 - 227 AAA_10 PF12846.2 304 3.5e-08 24.1 0.0 1 2 5e-06 0.00012 12.4 0.0 6 29 36 60 33 70 0.77 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_12 - 227 AAA_10 PF12846.2 304 3.5e-08 24.1 0.0 2 2 3.5e-05 0.00087 9.7 0.0 218 262 157 201 118 212 0.90 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_12 - 227 SbcCD_C PF13558.1 90 0.0001 13.2 0.1 1 1 3.4e-05 0.00086 10.2 0.1 62 89 158 185 113 186 0.79 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_12 - 227 DEAD PF00270.24 169 0.00013 12.4 0.0 1 1 1.1e-05 0.00028 11.4 0.0 14 102 31 218 19 222 0.80 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_12 - 227 AAA_25 PF13481.1 194 1.7e-05 15.2 0.0 1 2 6e-06 0.00015 12.1 0.0 30 50 28 48 18 76 0.84 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_12 - 227 AAA_25 PF13481.1 194 1.7e-05 15.2 0.0 2 2 0.023 0.57 0.5 0.0 165 188 177 200 160 205 0.80 # 7162 # 7842 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/46226e0f-1308-401f-a8d2-a2787253b858 # Target file: checkm_output/bins/pGCA_000829035.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000829035.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/46226e0f-1308-401f-a8d2-a2787253b858 checkm_output/bins/pGCA_000829035.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:42:29 2020 # [ok]