# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_14 - 195 MipZ PF09140.6 261 2.9e-10 29.9 0.4 1 2 8.8e-08 1.4e-06 17.8 0.0 5 43 5 43 1 54 0.86 # 19186 # 19770 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.511 1_14 - 195 MipZ PF09140.6 261 2.9e-10 29.9 0.4 2 2 1.3e-05 0.0002 10.7 0.1 90 137 67 114 47 145 0.85 # 19186 # 19770 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.511 1_13 - 1233 UvrD_C_2 PF13538.1 104 5.5e-06 16.9 0.1 1 1 1.4e-06 2.2e-05 14.9 0.1 3 103 786 893 784 894 0.71 # 15136 # 18834 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_13 - 1233 AAA_22 PF13401.1 131 7e-07 19.8 0.4 1 1 6.4e-07 1e-05 16.0 0.1 7 125 539 652 533 656 0.61 # 15136 # 18834 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_14 - 195 ArsA_ATPase PF02374.10 305 4.7e-07 19.3 0.3 1 1 5.6e-08 8.9e-07 18.4 0.0 1 40 1 40 1 75 0.90 # 19186 # 19770 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.511 1_13 - 1233 PhoH PF02562.11 205 1.4e-05 14.7 0.1 1 2 0.00042 0.0067 5.9 0.1 6 40 521 556 518 601 0.72 # 15136 # 18834 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_13 - 1233 PhoH PF02562.11 205 1.4e-05 14.7 0.1 2 2 0.00039 0.0062 6.0 0.0 120 165 616 661 593 689 0.82 # 15136 # 18834 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_14 - 195 VirC1 PF07015.6 231 3.5e-14 42.7 0.0 1 1 3.2e-15 5.2e-14 42.1 0.0 4 127 3 119 1 134 0.87 # 19186 # 19770 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.511 1_13 - 1233 AAA_16 PF13191.1 185 0.0011 9.3 9.2 1 1 4e-06 6.4e-05 13.3 0.7 15 85 527 606 521 767 0.82 # 15136 # 18834 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_14 - 195 CbiA PF01656.18 195 7e-25 77.9 0.0 1 1 6.8e-26 1.1e-24 77.2 0.0 1 191 3 164 3 168 0.77 # 19186 # 19770 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.511 1_1 - 945 N6_Mtase PF02384.11 311 4.3e-08 22.8 0.0 1 1 9.3e-09 1.5e-07 21.0 0.0 43 187 387 578 336 584 0.80 # 132 # 2966 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.512 1_14 - 195 AAA_31 PF13614.1 157 1.2e-05 15.6 0.0 1 2 3.6e-05 0.00057 10.2 0.0 3 39 3 39 2 46 0.78 # 19186 # 19770 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.511 1_14 - 195 AAA_31 PF13614.1 157 1.2e-05 15.6 0.0 2 2 0.0059 0.095 2.9 0.0 121 153 79 110 68 114 0.86 # 19186 # 19770 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.511 1_1 - 945 Methyltransf_26 PF13659.1 117 7.8e-15 45.3 0.0 1 1 1.4e-15 2.2e-14 43.9 0.0 3 116 393 575 391 576 0.82 # 132 # 2966 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.512 1_13 - 1233 AAA_30 PF13604.1 196 3.6e-58 186.7 6.6 1 3 2.2e-59 3.6e-58 186.7 6.6 1 195 519 721 519 722 0.96 # 15136 # 18834 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_13 - 1233 AAA_30 PF13604.1 196 3.6e-58 186.7 6.6 2 3 0.06 0.97 -0.8 0.2 17 82 727 796 718 838 0.65 # 15136 # 18834 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_13 - 1233 AAA_30 PF13604.1 196 3.6e-58 186.7 6.6 3 3 0.053 0.85 -0.6 0.5 143 171 987 1016 966 1028 0.66 # 15136 # 18834 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_13 - 1233 AAA_19 PF13245.1 76 1.1e-09 28.4 4.2 1 2 1.4e-09 2.2e-08 24.2 1.2 13 74 539 594 526 596 0.72 # 15136 # 18834 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_13 - 1233 AAA_19 PF13245.1 76 1.1e-09 28.4 4.2 2 2 0.0048 0.076 3.2 0.1 38 63 735 766 704 783 0.74 # 15136 # 18834 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_13 - 1233 AAA_11 PF13086.1 236 1.2e-08 25.1 15.8 1 2 0.0001 0.0017 8.3 0.0 2 90 520 597 519 614 0.80 # 15136 # 18834 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_13 - 1233 AAA_11 PF13086.1 236 1.2e-08 25.1 15.8 2 2 6.1e-09 9.8e-08 22.1 0.1 195 231 618 657 604 659 0.90 # 15136 # 18834 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_13 - 1233 PIF1 PF05970.9 364 1.4e-06 17.7 0.1 1 1 1.5e-07 2.4e-06 16.9 0.1 1 115 519 628 519 638 0.85 # 15136 # 18834 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/c9edf256-41d7-45d9-8253-cd6cf3cb6910 # Target file: checkm_output/bins/pGCA_000828015.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000828015.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c9edf256-41d7-45d9-8253-cd6cf3cb6910 checkm_output/bins/pGCA_000828015.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:42:27 2020 # [ok]