# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_61 - 399 Seryl_tRNA_N PF02403.17 108 0.035 6.5 10.3 1 2 0.00016 0.0099 8.2 5.4 52 102 168 218 166 223 0.81 # 37164 # 38360 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.320 1_61 - 399 Seryl_tRNA_N PF02403.17 108 0.035 6.5 10.3 2 2 0.044 2.8 0.3 0.2 52 104 244 298 231 302 0.55 # 37164 # 38360 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.320 1_24 - 439 Terminase_6 PF03237.10 384 2.8e-29 94.2 1.7 1 1 7.5e-31 4.7e-29 93.5 1.7 4 380 54 426 51 428 0.85 # 15979 # 17295 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.314 1_55 - 251 MipZ PF09140.6 261 2.7e-09 28.7 6.5 1 1 4.3e-09 2.7e-07 22.1 6.5 2 142 4 159 3 241 0.64 # 33299 # 34051 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_55 - 251 YhjQ PF06564.7 244 4.8e-10 31.4 0.0 1 1 1e-11 6.5e-10 31.0 0.0 4 151 5 149 2 177 0.83 # 33299 # 34051 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_41 - 140 SSB PF00436.20 104 4.5e-36 115.2 0.3 1 1 8.9e-38 5.6e-36 114.9 0.3 1 104 1 102 1 102 0.97 # 25053 # 25472 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.338 1_55 - 251 AAA_22 PF13401.1 131 0.00023 13.6 0.1 1 1 3.1e-05 0.00099 11.5 0.1 14 98 13 126 6 171 0.67 # 33299 # 34051 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_50 - 765 AAA_22 PF13401.1 131 0.0003 13.2 0.0 1 1 5.3e-05 0.0017 10.8 0.0 8 68 388 468 383 493 0.77 # 28563 # 30857 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.247 1_55 - 251 SRP54 PF00448.17 196 9.4e-09 27.2 0.6 1 2 2.3e-08 1.5e-06 20.0 0.1 11 40 13 42 3 82 0.84 # 33299 # 34051 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_55 - 251 SRP54 PF00448.17 196 9.4e-09 27.2 0.6 2 2 0.00072 0.045 5.4 0.0 67 92 100 124 77 139 0.78 # 33299 # 34051 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_55 - 251 AAA_17 PF13207.1 121 0.00028 14.0 0.0 1 1 1.7e-05 0.0011 12.1 0.0 9 77 13 93 11 192 0.57 # 33299 # 34051 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_55 - 251 MobB PF03205.9 140 8.5e-05 14.6 0.1 1 1 4.3e-06 0.00027 12.9 0.1 10 42 13 43 4 47 0.84 # 33299 # 34051 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_55 - 251 LpxK PF02606.9 326 0.00016 12.9 0.0 1 1 4.2e-06 0.00027 12.2 0.0 36 72 3 38 1 57 0.83 # 33299 # 34051 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_55 - 251 ArsA_ATPase PF02374.10 305 1.9e-13 42.3 1.1 1 1 9.3e-15 5.9e-13 40.7 0.6 8 136 10 125 5 201 0.78 # 33299 # 34051 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_55 - 251 VirC1 PF07015.6 231 5.8e-07 21.0 0.0 1 1 1.9e-08 1.2e-06 20.0 0.0 3 46 4 47 2 63 0.90 # 33299 # 34051 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_55 - 251 Fer4_NifH PF00142.13 273 3.1e-11 35.1 7.5 1 1 2.6e-12 1.6e-10 32.8 7.5 6 247 9 247 4 250 0.81 # 33299 # 34051 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_55 - 251 AAA_18 PF13238.1 129 0.0012 11.4 5.7 1 1 1.6e-05 0.00051 12.6 0.9 8 78 13 121 8 125 0.52 # 33299 # 34051 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_50 - 765 AAA_18 PF13238.1 129 0.033 6.8 10.1 1 2 0.023 0.73 2.4 0.1 20 85 191 267 185 275 0.70 # 28563 # 30857 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.247 1_50 - 765 AAA_18 PF13238.1 129 0.033 6.8 10.1 2 2 0.00043 0.014 8.0 0.1 6 52 392 443 390 507 0.77 # 28563 # 30857 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.247 1_55 - 251 CbiA PF01656.18 195 2.2e-35 114.1 2.2 1 1 4.1e-37 2.6e-35 113.8 2.2 1 191 5 219 5 223 0.80 # 33299 # 34051 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_50 - 765 AAA_14 PF13173.1 128 1.9e-06 20.0 4.1 1 2 2.5e-06 0.00016 13.9 0.5 10 73 392 453 386 536 0.71 # 28563 # 30857 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.247 1_50 - 765 AAA_14 PF13173.1 128 1.9e-06 20.0 4.1 2 2 0.00064 0.04 6.1 0.2 52 96 645 691 589 713 0.62 # 28563 # 30857 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.247 1_55 - 251 AAA_31 PF13614.1 157 1.4e-14 46.6 2.0 1 2 5.6e-16 3.5e-14 45.3 0.3 2 127 4 125 3 135 0.78 # 33299 # 34051 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_55 - 251 AAA_31 PF13614.1 157 1.4e-14 46.6 2.0 2 2 0.044 2.8 0.1 0.1 69 122 156 211 138 214 0.68 # 33299 # 34051 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_55 - 251 AAA_19 PF13245.1 76 0.00022 13.3 0.0 1 1 6.1e-06 0.00038 12.5 0.0 14 48 7 37 4 56 0.82 # 33299 # 34051 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_50 - 765 AAA_10 PF12846.2 304 1.3e-08 26.8 0.7 1 1 1.1e-09 3.4e-08 25.5 0.1 5 233 388 667 384 715 0.68 # 28563 # 30857 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.247 1_55 - 251 AAA_10 PF12846.2 304 0.0003 12.5 0.4 1 1 4.9e-05 0.0015 10.2 0.4 11 47 13 48 11 248 0.86 # 33299 # 34051 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_55 - 251 ResIII PF04851.10 184 0.0047 9.0 8.4 1 2 1e-05 0.00066 11.8 2.4 29 153 7 122 5 124 0.64 # 33299 # 34051 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_55 - 251 ResIII PF04851.10 184 0.0047 9.0 8.4 2 2 0.064 4 -0.6 0.4 66 106 180 215 161 242 0.51 # 33299 # 34051 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_50 - 765 TrwB_AAD_bind PF10412.4 386 1.2e-05 16.3 0.0 1 2 2.1e-05 0.0013 9.6 0.0 12 54 381 423 373 441 0.80 # 28563 # 30857 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.247 1_50 - 765 TrwB_AAD_bind PF10412.4 386 1.2e-05 16.3 0.0 2 2 0.00096 0.061 4.1 0.1 225 288 632 700 603 720 0.76 # 28563 # 30857 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.247 1_24 - 439 Terminase_3 PF04466.8 387 1.9e-15 49.0 1.8 1 1 5.4e-17 3.4e-15 48.2 1.8 7 386 52 428 46 429 0.71 # 15979 # 17295 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.314 1_41 - 140 tRNA_anti-codon PF01336.20 75 6.2e-05 15.1 0.1 1 1 1.8e-06 0.00011 14.3 0.1 28 73 47 100 42 102 0.80 # 25053 # 25472 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.338 1_55 - 251 AAA_24 PF13479.1 213 7.6e-05 14.6 0.7 1 1 2.8e-06 0.00018 13.4 0.4 11 163 11 203 3 219 0.71 # 33299 # 34051 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_55 - 251 AAA_25 PF13481.1 194 6.3e-05 14.7 0.0 1 1 1.8e-06 0.00011 13.9 0.0 41 150 11 123 3 127 0.59 # 33299 # 34051 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.236 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/ba48c0b4-baed-489d-80a1-3513ffbba3ef # Target file: checkm_output/bins/pGCA_000789355.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000789355.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ba48c0b4-baed-489d-80a1-3513ffbba3ef checkm_output/bins/pGCA_000789355.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:42:20 2020 # [ok]