# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_4 - 102 Mg_chelatase PF01078.16 207 3.2e-05 17.6 0.0 1 1 2.4e-07 3.4e-05 17.5 0.0 2 51 16 71 15 89 0.73 # 4067 # 4372 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.379 1_78 - 227 Mg_chelatase PF01078.16 207 0.0019 11.8 0.2 1 1 5e-05 0.0072 9.9 0.0 15 60 24 69 20 85 0.77 # 76349 # 77029 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.426 2_4 - 102 Torsin PF06309.6 127 0.0016 12.7 0.0 1 1 8.3e-06 0.0024 12.2 0.0 25 75 17 61 2 71 0.79 # 4067 # 4372 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.379 1_86 - 80 Ribosomal_S17 PF00366.15 69 0.00073 14.0 0.1 1 1 3.2e-06 0.00093 13.7 0.1 4 25 30 51 28 66 0.90 # 82574 # 82813 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.300 2_4 - 102 Rad17 PF03215.10 519 1.8e-05 17.9 0.0 1 1 6.3e-08 1.8e-05 17.9 0.0 10 68 8 62 2 82 0.80 # 4067 # 4372 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.379 3_82 - 426 Terminase_6 PF03237.10 384 3.5e-35 115.8 0.2 1 1 1.4e-37 4.2e-35 115.6 0.2 2 383 27 418 26 419 0.87 # 49950 # 51227 # -1 # ID=3_82;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.412 3_26 - 251 IstB_IS21 PF01695.12 178 4.5e-21 69.4 0.1 1 1 4.6e-23 6.6e-21 68.9 0.1 6 159 58 221 49 232 0.79 # 9270 # 10022 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.404 2_4 - 102 IstB_IS21 PF01695.12 178 0.0029 11.4 0.0 1 1 2.4e-05 0.0034 11.2 0.0 32 68 26 60 10 64 0.78 # 4067 # 4372 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.379 1_18 - 223 MipZ PF09140.6 261 2.2e-10 34.4 0.0 1 1 2.9e-12 4.2e-10 33.5 0.0 4 125 51 184 48 190 0.65 # 16265 # 16933 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.338 3_52 - 274 MipZ PF09140.6 261 2.1e-09 31.2 0.1 1 1 2.3e-08 3.2e-06 20.7 0.1 3 66 5 68 3 161 0.54 # 23526 # 24347 # 1 # ID=3_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.326 3_52 - 274 YhjQ PF06564.7 244 1.6e-07 25.3 0.0 1 1 2.5e-09 7.1e-07 23.2 0.0 9 149 10 160 1 167 0.73 # 23526 # 24347 # 1 # ID=3_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.326 2_53 - 470 3HCDH_N PF02737.13 180 1e-08 29.4 0.0 1 1 7.4e-11 2.1e-08 28.4 0.0 1 42 5 46 5 74 0.88 # 55226 # 56635 # -1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.389 2_29 - 410 GIDA PF01134.17 392 0.00057 13.2 0.4 1 2 1.7e-05 0.0049 10.1 0.0 1 29 6 42 6 64 0.81 # 28780 # 30009 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.401 2_29 - 410 GIDA PF01134.17 392 0.00057 13.2 0.4 2 2 0.013 3.7 0.6 0.0 100 142 109 152 96 176 0.73 # 28780 # 30009 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.401 3_11 - 47 RRM_5 PF13893.1 56 0.00078 13.7 0.0 1 1 3.6e-06 0.001 13.3 0.0 28 54 1 27 1 28 0.97 # 4380 # 4520 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.348 3_81 - 504 CoaE PF01121.15 180 0.00019 15.3 0.3 1 1 1.2e-06 0.00034 14.4 0.3 114 169 430 484 387 490 0.86 # 48428 # 49939 # -1 # ID=3_81;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.376 1_41 - 447 Pyr_redox_2 PF07992.9 201 7.2e-06 20.4 0.0 1 1 1.7e-07 2.4e-05 18.7 0.0 2 128 5 189 4 380 0.80 # 41227 # 42567 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.328 2_29 - 410 Pyr_redox_2 PF07992.9 201 0.0004 14.7 0.1 1 1 6.9e-06 0.00099 13.4 0.1 1 90 6 137 6 179 0.59 # 28780 # 30009 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.401 2_46 - 686 DUF87 PF01935.12 229 4e-09 31.0 0.5 1 1 1.1e-10 1.5e-08 29.1 0.4 25 82 309 367 303 618 0.92 # 46702 # 48759 # -1 # ID=2_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.364 2_16 - 389 DUF87 PF01935.12 229 4.4e-06 21.0 0.9 1 1 8.2e-08 1.2e-05 19.6 0.1 23 49 144 170 137 181 0.88 # 19769 # 20935 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_78 - 227 NB-ARC PF00931.17 287 0.0021 11.3 0.1 1 1 1.2e-05 0.0034 10.6 0.1 20 39 32 51 21 67 0.84 # 76349 # 77029 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.426 2_16 - 389 AAA_22 PF13401.1 131 1.4e-06 22.8 0.0 1 1 4.7e-08 2.7e-06 22.0 0.0 5 112 145 273 140 293 0.75 # 19769 # 20935 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 2_6 - 152 AAA_22 PF13401.1 131 1.2e-05 19.9 0.3 1 2 3.3e-06 0.00019 16.0 0.0 77 124 5 55 2 62 0.82 # 5755 # 6210 # 1 # ID=2_6;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 2_6 - 152 AAA_22 PF13401.1 131 1.2e-05 19.9 0.3 2 2 0.037 2.1 2.9 0.2 76 113 80 122 47 139 0.65 # 5755 # 6210 # 1 # ID=2_6;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_78 - 227 AAA_22 PF13401.1 131 9.3e-05 17.0 0.3 1 1 1e-05 0.00058 14.4 0.3 3 23 30 50 28 206 0.77 # 76349 # 77029 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.426 2_4 - 102 AAA_22 PF13401.1 131 0.00085 13.9 0.0 1 1 1.6e-05 0.00094 13.7 0.0 5 24 40 59 26 92 0.88 # 4067 # 4372 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.379 3_26 - 251 AAA_22 PF13401.1 131 0.0041 11.7 0.8 1 1 0.00072 0.041 8.4 0.8 9 95 104 171 101 210 0.66 # 9270 # 10022 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.404 2_76 - 174 tRNA_anti-like PF12869.2 144 0.0018 12.2 0.4 1 1 1.6e-05 0.0046 10.8 0.4 2 66 2 118 1 124 0.64 # 87524 # 88045 # 1 # ID=2_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.262 2_29 - 410 Trp_halogenase PF04820.9 454 7.4e-09 29.0 0.2 1 3 0.00038 0.054 6.4 0.0 1 77 6 78 6 84 0.76 # 28780 # 30009 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.401 2_29 - 410 Trp_halogenase PF04820.9 454 7.4e-09 29.0 0.2 2 3 0.00034 0.049 6.6 0.2 149 213 99 168 93 178 0.81 # 28780 # 30009 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.401 2_29 - 410 Trp_halogenase PF04820.9 454 7.4e-09 29.0 0.2 3 3 5.8e-06 0.00083 12.4 0.0 314 373 287 346 259 378 0.84 # 28780 # 30009 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.401 1_41 - 447 Trp_halogenase PF04820.9 454 3.8e-07 23.4 0.1 1 3 0.077 11 -1.2 0.0 3 32 6 32 4 35 0.82 # 41227 # 42567 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.328 1_41 - 447 Trp_halogenase PF04820.9 454 3.8e-07 23.4 0.1 2 3 4.4e-05 0.0064 9.5 0.0 160 213 125 179 112 188 0.77 # 41227 # 42567 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.328 1_41 - 447 Trp_halogenase PF04820.9 454 3.8e-07 23.4 0.1 3 3 2.1e-05 0.003 10.6 0.0 316 370 307 362 296 373 0.80 # 41227 # 42567 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.328 1_18 - 223 SRP54 PF00448.17 196 7.1e-06 20.0 0.1 1 2 7.7e-07 0.00022 15.1 0.0 10 39 57 86 49 104 0.91 # 16265 # 16933 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.338 1_18 - 223 SRP54 PF00448.17 196 7.1e-06 20.0 0.1 2 2 0.0059 1.7 2.4 0.0 76 92 149 165 128 208 0.78 # 16265 # 16933 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.338 2_6 - 152 DNA_pol3_delta2 PF13177.1 162 6.6e-29 95.0 0.1 1 1 7.6e-31 1.1e-28 94.3 0.1 85 161 2 78 1 79 0.97 # 5755 # 6210 # 1 # ID=2_6;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 2_4 - 102 DNA_pol3_delta2 PF13177.1 162 1.8e-12 41.6 0.0 1 1 1.5e-14 2.1e-12 41.4 0.0 1 68 21 90 21 95 0.94 # 4067 # 4372 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.379 2_4 - 102 AAA_17 PF13207.1 121 4.3e-05 18.7 0.3 1 1 6.5e-07 6.2e-05 18.2 0.0 3 22 43 62 42 94 0.85 # 4067 # 4372 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.379 1_78 - 227 AAA_17 PF13207.1 121 0.00041 15.6 0.2 1 1 7.9e-06 0.00076 14.7 0.3 2 19 34 51 33 124 0.88 # 76349 # 77029 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.426 3_26 - 251 AAA_17 PF13207.1 121 0.00062 15.0 0.7 1 1 1.3e-05 0.0013 14.0 0.1 5 77 105 199 102 247 0.49 # 9270 # 10022 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.404 1_78 - 227 AAA_21 PF13304.1 303 4.4e-13 44.2 0.0 1 1 7.7e-12 2.2e-09 32.0 0.0 3 299 35 201 33 205 0.62 # 76349 # 77029 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.426 1_78 - 227 MobB PF03205.9 140 0.0019 12.3 0.1 1 1 2.3e-05 0.0067 10.5 0.0 3 19 34 50 32 54 0.89 # 76349 # 77029 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.426 3_52 - 274 ArsA_ATPase PF02374.10 305 2.2e-09 31.1 0.1 1 1 4.3e-11 6.1e-09 29.7 0.1 9 136 11 138 3 143 0.66 # 23526 # 24347 # 1 # ID=3_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.326 1_18 - 223 ArsA_ATPase PF02374.10 305 3.5e-06 20.6 0.0 1 2 2e-05 0.0028 11.1 0.0 10 38 57 85 48 99 0.90 # 16265 # 16933 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.338 1_18 - 223 ArsA_ATPase PF02374.10 305 3.5e-06 20.6 0.0 2 2 0.00031 0.045 7.1 0.0 115 136 143 166 128 169 0.80 # 16265 # 16933 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.338 3_26 - 251 PhoH PF02562.11 205 0.00089 12.9 0.4 1 2 9e-06 0.0026 11.4 0.3 21 47 101 127 82 141 0.79 # 9270 # 10022 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.404 3_26 - 251 PhoH PF02562.11 205 0.00089 12.9 0.4 2 2 0.068 20 -1.3 0.0 58 70 161 181 124 210 0.54 # 9270 # 10022 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.404 2_4 - 102 T2SE PF00437.15 272 4.7e-05 16.8 0.0 1 1 4e-07 5.7e-05 16.5 0.0 103 149 15 60 4 67 0.86 # 4067 # 4372 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.379 2_16 - 389 T2SE PF00437.15 272 0.00077 12.8 0.0 1 1 1.1e-05 0.0016 11.7 0.0 129 153 145 169 93 178 0.85 # 19769 # 20935 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_18 - 223 AAA_26 PF13500.1 199 2.5e-06 21.6 0.2 1 2 0.00032 0.093 6.7 0.0 1 34 48 81 48 94 0.93 # 16265 # 16933 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.338 1_18 - 223 AAA_26 PF13500.1 199 2.5e-06 21.6 0.2 2 2 3.6e-06 0.001 13.0 0.1 131 170 182 221 165 222 0.89 # 16265 # 16933 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.338 3_26 - 251 Zeta_toxin PF06414.7 201 8.5e-05 16.1 0.0 1 1 1.1e-06 0.00016 15.2 0.0 20 47 103 131 94 167 0.87 # 9270 # 10022 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.404 2_16 - 389 Zeta_toxin PF06414.7 201 0.0016 11.9 0.0 1 1 1.9e-05 0.0027 11.2 0.0 19 94 147 223 140 241 0.74 # 19769 # 20935 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 2_29 - 410 NAD_binding_8 PF13450.1 68 6.4e-05 17.4 0.0 1 1 6.6e-07 0.00019 15.9 0.0 2 29 10 37 9 51 0.92 # 28780 # 30009 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.401 1_41 - 447 GMC_oxred_N PF00732.14 296 1.2e-05 18.9 0.2 1 2 0.053 15 -1.1 0.0 3 41 5 43 4 60 0.66 # 41227 # 42567 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.328 1_41 - 447 GMC_oxred_N PF00732.14 296 1.2e-05 18.9 0.2 2 2 1.6e-07 4.6e-05 17.0 0.1 205 255 125 174 108 201 0.81 # 41227 # 42567 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.328 2_53 - 470 F420_oxidored PF03807.12 96 1.8e-05 19.5 0.1 1 1 1.8e-07 5e-05 18.1 0.1 1 92 5 99 5 103 0.80 # 55226 # 56635 # -1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.389 2_29 - 410 FAD_binding_3 PF01494.14 356 1.2e-20 68.3 0.0 1 1 4.4e-22 6.3e-20 65.8 0.0 2 258 5 249 4 343 0.68 # 28780 # 30009 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.401 1_41 - 447 FAD_binding_3 PF01494.14 356 6.6e-08 26.3 0.0 1 2 4.5e-05 0.0064 9.9 0.0 5 39 6 40 3 50 0.86 # 41227 # 42567 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.328 1_41 - 447 FAD_binding_3 PF01494.14 356 6.6e-08 26.3 0.0 2 2 2.3e-06 0.00033 14.2 0.0 116 325 117 341 105 346 0.58 # 41227 # 42567 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.328 1_78 - 227 SMC_N PF02463.14 220 1.7e-08 28.3 0.5 1 2 1.9e-05 0.0053 10.4 0.4 25 44 32 51 25 59 0.88 # 76349 # 77029 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.426 1_78 - 227 SMC_N PF02463.14 220 1.7e-08 28.3 0.5 2 2 2.6e-07 7.4e-05 16.4 0.0 134 205 139 207 56 219 0.74 # 76349 # 77029 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.426 3_52 - 274 VirC1 PF07015.6 231 0.00036 14.0 0.1 1 2 1.1e-05 0.0031 11.0 0.0 4 40 5 41 1 64 0.89 # 23526 # 24347 # 1 # ID=3_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.326 3_52 - 274 VirC1 PF07015.6 231 0.00036 14.0 0.1 2 2 0.015 4.3 0.7 0.0 82 138 127 181 118 194 0.66 # 23526 # 24347 # 1 # ID=3_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.326 3_52 - 274 Fer4_NifH PF00142.13 273 4.6e-07 23.6 2.6 1 2 6.1e-08 8.7e-06 19.4 0.1 8 51 11 54 4 77 0.86 # 23526 # 24347 # 1 # ID=3_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.326 3_52 - 274 Fer4_NifH PF00142.13 273 4.6e-07 23.6 2.6 2 2 0.0023 0.34 4.4 0.3 142 247 151 261 122 269 0.74 # 23526 # 24347 # 1 # ID=3_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.326 1_18 - 223 Fer4_NifH PF00142.13 273 4.2e-05 17.2 0.1 1 1 7.8e-07 0.00011 15.8 0.1 9 58 57 106 51 167 0.82 # 16265 # 16933 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.338 2_16 - 389 Arch_ATPase PF01637.13 234 2.8e-07 24.8 0.2 1 1 1.6e-09 4.7e-07 24.1 0.2 20 131 144 260 137 273 0.76 # 19769 # 20935 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 2_16 - 389 AAA_16 PF13191.1 185 9.4e-05 16.8 0.0 1 1 2.4e-06 0.00017 16.0 0.0 20 48 140 168 125 194 0.83 # 19769 # 20935 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_78 - 227 AAA_16 PF13191.1 185 0.00021 15.7 0.2 1 1 3.6e-06 0.00026 15.4 0.2 21 42 28 49 20 167 0.91 # 76349 # 77029 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.426 2_4 - 102 AAA_16 PF13191.1 185 0.00025 15.5 0.0 1 1 3.5e-06 0.00025 15.5 0.0 24 42 39 57 18 85 0.77 # 4067 # 4372 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.379 3_26 - 251 AAA_16 PF13191.1 185 0.002 12.5 0.0 1 1 4.9e-05 0.0035 11.7 0.0 28 81 103 164 100 208 0.70 # 9270 # 10022 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.404 2_16 - 389 AAA_23 PF13476.1 202 0.0017 13.1 0.4 1 1 3.6e-05 0.0034 12.1 0.4 15 39 140 164 131 375 0.82 # 19769 # 20935 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_78 - 227 AAA_23 PF13476.1 202 0.0032 12.2 0.5 1 1 6e-05 0.0058 11.3 0.5 23 39 35 51 21 54 0.86 # 76349 # 77029 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.426 2_4 - 102 AAA_23 PF13476.1 202 0.011 10.4 3.5 1 2 0.036 3.5 2.3 0.3 32 41 26 35 26 35 0.93 # 4067 # 4372 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.379 2_4 - 102 AAA_23 PF13476.1 202 0.011 10.4 3.5 2 2 0.00028 0.026 9.2 0.2 23 39 43 59 40 72 0.91 # 4067 # 4372 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.379 2_4 - 102 AAA_18 PF13238.1 129 0.0003 15.5 0.0 1 1 4.3e-06 0.00041 15.1 0.0 2 21 43 62 43 91 0.73 # 4067 # 4372 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.379 1_78 - 227 AAA_18 PF13238.1 129 0.00044 15.0 0.0 1 2 4.4e-05 0.0042 11.8 0.0 1 18 34 51 34 124 0.81 # 76349 # 77029 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.426 1_78 - 227 AAA_18 PF13238.1 129 0.00044 15.0 0.0 2 2 0.071 6.8 1.4 0.0 48 97 169 212 125 222 0.77 # 76349 # 77029 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.426 2_8 - 911 AAA_18 PF13238.1 129 0.023 9.4 6.1 1 1 0.00012 0.011 10.4 1.1 30 92 148 208 123 231 0.87 # 7107 # 9839 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.311 3_62 - 79 AAA_13 PF13166.1 712 6.2e-05 16.0 2.6 1 1 4.6e-07 6.7e-05 15.9 2.6 424 471 2 49 1 59 0.86 # 29438 # 29674 # -1 # ID=3_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.367 2_42 - 199 AAA_13 PF13166.1 712 0.0005 13.0 5.0 1 1 3.8e-06 0.00054 12.8 5.0 87 192 22 125 15 170 0.65 # 41994 # 42590 # -1 # ID=2_42;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.327 3_52 - 274 CbiA PF01656.18 195 3.5e-32 105.8 0.3 1 1 3.1e-34 4.5e-32 105.4 0.3 1 193 5 230 5 232 0.82 # 23526 # 24347 # 1 # ID=3_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.326 1_18 - 223 CbiA PF01656.18 195 1e-20 68.4 0.3 1 1 1.2e-22 1.7e-20 67.6 0.3 2 159 51 220 50 222 0.76 # 16265 # 16933 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.338 3_26 - 251 KaiC PF06745.8 227 0.0005 13.6 1.4 1 1 2.4e-06 0.0007 13.1 0.1 22 67 102 146 89 156 0.86 # 9270 # 10022 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.404 2_4 - 102 AAA_14 PF13173.1 128 0.00029 15.1 0.0 1 1 1.8e-06 0.00051 14.4 0.0 4 26 41 63 39 96 0.69 # 4067 # 4372 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.379 1_41 - 447 SE PF08491.5 276 5.5e-05 16.5 0.0 1 2 0.069 20 -1.8 0.0 59 114 186 242 181 251 0.78 # 41227 # 42567 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.328 1_41 - 447 SE PF08491.5 276 5.5e-05 16.5 0.0 2 2 6.3e-07 0.00018 14.8 0.0 76 176 253 353 244 365 0.81 # 41227 # 42567 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.328 1_41 - 447 HI0933_like PF03486.9 409 0.0012 11.8 0.8 1 3 5.4e-05 0.016 8.0 0.0 2 38 4 40 3 43 0.90 # 41227 # 42567 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.328 1_41 - 447 HI0933_like PF03486.9 409 0.0012 11.8 0.8 2 3 0.0068 2 1.1 0.4 108 163 110 174 106 195 0.63 # 41227 # 42567 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.328 1_41 - 447 HI0933_like PF03486.9 409 0.0012 11.8 0.8 3 3 0.078 22 -2.3 0.0 82 98 179 195 176 210 0.72 # 41227 # 42567 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.328 2_4 - 102 AAA_6 PF12774.2 231 0.0024 11.8 0.1 1 1 9.8e-06 0.0028 11.6 0.1 37 77 44 84 18 88 0.83 # 4067 # 4372 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.379 1_78 - 227 AAA_29 PF13555.1 62 5.4e-06 20.3 0.1 1 1 9.9e-08 9.4e-06 19.5 0.1 19 40 28 48 20 59 0.81 # 76349 # 77029 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.426 2_16 - 389 AAA_29 PF13555.1 62 0.00012 16.0 0.0 1 1 2.6e-06 0.00025 15.0 0.0 19 40 140 161 132 171 0.84 # 19769 # 20935 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 2_4 - 102 AAA_29 PF13555.1 62 0.00078 13.4 0.1 1 1 2.2e-05 0.0021 12.0 0.1 21 39 37 55 26 57 0.81 # 4067 # 4372 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.379 1_41 - 447 FAD_binding_2 PF00890.19 417 3.4e-08 27.0 0.0 1 2 0.00018 0.026 7.7 0.0 2 34 5 37 4 45 0.90 # 41227 # 42567 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.328 1_41 - 447 FAD_binding_2 PF00890.19 417 3.4e-08 27.0 0.0 2 2 2.4e-07 3.4e-05 17.2 0.0 143 210 113 186 64 195 0.79 # 41227 # 42567 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.328 2_29 - 410 FAD_binding_2 PF00890.19 417 2.3e-05 17.8 0.0 1 2 0.0001 0.014 8.5 0.0 1 32 6 37 6 49 0.93 # 28780 # 30009 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.401 2_29 - 410 FAD_binding_2 PF00890.19 417 2.3e-05 17.8 0.0 2 2 0.00027 0.039 7.1 0.1 145 200 108 163 102 184 0.83 # 28780 # 30009 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.401 3_26 - 251 AAA PF00004.24 132 2.1e-08 28.9 0.2 1 1 3.2e-10 3.1e-08 28.3 0.2 2 127 103 227 102 234 0.71 # 9270 # 10022 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.404 2_6 - 152 AAA PF00004.24 132 1.4e-07 26.2 0.0 1 1 2.4e-09 2.3e-07 25.5 0.0 44 127 5 73 1 77 0.83 # 5755 # 6210 # 1 # ID=2_6;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 2_4 - 102 AAA PF00004.24 132 3.9e-06 21.5 0.0 1 1 5.8e-08 5.5e-06 21.0 0.0 2 22 43 63 42 89 0.82 # 4067 # 4372 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.379 3_26 - 251 Bac_DnaA PF00308.13 219 6.3e-07 23.6 0.2 1 1 3.2e-09 9.3e-07 23.1 0.2 19 155 83 228 65 242 0.70 # 9270 # 10022 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.404 2_29 - 410 Thi4 PF01946.12 230 8.1e-05 16.2 0.0 1 2 3.3e-06 0.00094 12.7 0.0 18 48 5 35 2 45 0.93 # 28780 # 30009 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.401 2_29 - 410 Thi4 PF01946.12 230 8.1e-05 16.2 0.0 2 2 0.015 4.2 0.7 0.0 107 133 116 141 94 144 0.81 # 28780 # 30009 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.401 1_8 - 99 PAPS_reduct PF01507.14 174 0.0017 12.6 0.9 1 1 7e-06 0.002 12.3 0.9 34 99 20 86 11 92 0.79 # 6512 # 6808 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.323 2_4 - 102 Sigma54_activat PF00158.21 168 0.0001 16.2 0.0 1 1 3.9e-07 0.00011 16.1 0.0 6 44 23 61 19 89 0.73 # 4067 # 4372 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.379 1_78 - 227 MMR_HSR1 PF01926.18 116 0.0018 12.6 0.4 1 1 9.5e-06 0.0027 12.1 0.4 2 19 34 51 33 213 0.90 # 76349 # 77029 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.426 2_53 - 470 NAD_binding_11 PF14833.1 122 0.00025 15.5 0.0 1 1 4.8e-06 0.0014 13.1 0.0 1 41 176 217 176 234 0.87 # 55226 # 56635 # -1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.389 2_75 - 142 Prenylcys_lyase PF07156.9 368 0.001 12.4 0.4 1 1 4e-06 0.0012 12.2 0.4 165 242 16 91 3 111 0.73 # 86700 # 87125 # -1 # ID=2_75;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.315 1_78 - 227 DUF258 PF03193.11 161 4.8e-05 17.0 0.0 1 1 3.1e-07 8.8e-05 16.1 0.0 35 55 30 51 17 66 0.85 # 76349 # 77029 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.426 1_8 - 99 FTHFS PF01268.14 557 0.001 11.5 0.1 1 1 4.6e-06 0.0013 11.1 0.1 4 51 40 88 37 96 0.82 # 6512 # 6808 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.323 2_62 - 1025 TraG-D_C PF12696.2 128 4.4e-13 43.6 0.0 1 1 6.1e-15 1.8e-12 41.7 0.0 5 123 608 728 606 732 0.81 # 66118 # 69192 # -1 # ID=2_62;partial=00;start_type=TTG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.353 2_53 - 470 NAD_binding_2 PF03446.10 163 8.8e-52 169.6 0.1 1 1 4.4e-54 1.3e-51 169.1 0.1 3 162 5 173 3 174 0.96 # 55226 # 56635 # -1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.389 1_18 - 223 AAA_31 PF13614.1 157 4.4e-30 99.1 0.1 1 1 3.9e-32 5.5e-30 98.7 0.1 2 155 49 194 48 196 0.94 # 16265 # 16933 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.338 3_52 - 274 AAA_31 PF13614.1 157 3.5e-11 37.7 0.1 1 1 3.9e-12 5.6e-10 33.8 0.1 5 149 7 159 4 166 0.67 # 23526 # 24347 # 1 # ID=3_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.326 1_78 - 227 AAA_33 PF13671.1 143 0.00044 14.5 0.5 1 1 8e-06 0.0023 12.2 0.5 2 19 34 51 33 220 0.53 # 76349 # 77029 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.426 2_53 - 470 NAD_Gly3P_dh_N PF01210.18 157 4e-06 21.0 0.0 1 1 5.6e-08 1.6e-05 19.1 0.0 1 50 5 53 5 119 0.85 # 55226 # 56635 # -1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.389 2_53 - 470 2-Hacid_dh_C PF02826.14 178 8.6e-05 16.1 0.1 1 1 6.6e-07 0.00019 15.0 0.1 36 77 3 46 1 128 0.76 # 55226 # 56635 # -1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.389 1_78 - 227 AAA_30 PF13604.1 196 0.00017 15.6 0.3 1 2 0.00011 0.0079 10.1 0.0 14 38 27 51 23 61 0.85 # 76349 # 77029 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.426 1_78 - 227 AAA_30 PF13604.1 196 0.00017 15.6 0.3 2 2 0.011 0.8 3.6 0.1 71 128 133 198 113 207 0.70 # 76349 # 77029 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.426 2_6 - 152 AAA_30 PF13604.1 196 0.00034 14.6 0.0 1 1 9.3e-06 0.00067 13.7 0.0 91 127 17 53 2 61 0.83 # 5755 # 6210 # 1 # ID=2_6;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 3_26 - 251 AAA_30 PF13604.1 196 0.0019 12.2 0.6 1 1 4.7e-05 0.0033 11.4 0.6 21 53 102 134 90 174 0.88 # 9270 # 10022 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.404 2_4 - 102 AAA_30 PF13604.1 196 0.0038 11.2 0.4 1 1 8.5e-05 0.0061 10.5 0.3 20 39 41 60 30 65 0.82 # 4067 # 4372 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.379 2_53 - 470 ApbA PF02558.11 151 0.00058 13.7 0.0 1 1 4.6e-06 0.0013 12.6 0.0 1 94 6 94 6 105 0.73 # 55226 # 56635 # -1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.389 2_6 - 152 DNA_pol3_delta PF06144.8 172 8.9e-06 19.7 0.1 1 1 3.6e-08 1e-05 19.5 0.1 56 168 18 122 2 126 0.84 # 5755 # 6210 # 1 # ID=2_6;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 2_16 - 389 FtsK_SpoIIIE PF01580.13 205 1.4e-26 87.7 0.1 1 1 1.4e-28 2e-26 87.1 0.1 17 204 121 291 116 292 0.90 # 19769 # 20935 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 2_46 - 686 FtsK_SpoIIIE PF01580.13 205 0.00016 15.6 0.2 1 1 5.5e-06 0.0008 13.3 0.1 31 92 299 357 289 366 0.81 # 46702 # 48759 # -1 # ID=2_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.364 1_78 - 227 ABC_tran PF00005.22 137 1e-33 110.9 0.0 1 1 9.8e-36 1.4e-33 110.5 0.0 1 136 21 169 21 170 0.91 # 76349 # 77029 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.426 2_16 - 389 ABC_tran PF00005.22 137 0.00085 14.0 0.0 1 1 1.2e-05 0.0017 13.1 0.0 13 45 146 180 142 296 0.70 # 19769 # 20935 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 2_53 - 470 UDPG_MGDP_dh_N PF03721.9 185 6.4e-06 20.0 0.1 1 1 5.5e-08 1.6e-05 18.8 0.1 2 41 5 44 4 71 0.87 # 55226 # 56635 # -1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.389 2_4 - 102 RuvB_N PF05496.7 234 1e-09 32.2 0.0 1 1 7.5e-12 1.1e-09 32.1 0.0 16 83 9 72 2 88 0.78 # 4067 # 4372 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.379 3_26 - 251 RuvB_N PF05496.7 234 0.0005 13.5 0.0 1 1 5.8e-06 0.00083 12.8 0.0 13 88 60 141 50 174 0.67 # 9270 # 10022 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.404 2_4 - 102 AAA_19 PF13245.1 76 1.7e-05 18.9 0.1 1 1 3.4e-07 2.4e-05 18.4 0.1 11 33 40 61 26 76 0.82 # 4067 # 4372 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.379 3_26 - 251 AAA_19 PF13245.1 76 0.00027 15.1 0.4 1 1 7.2e-06 0.00052 14.2 0.4 16 49 105 134 90 183 0.85 # 9270 # 10022 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.404 1_18 - 223 AAA_19 PF13245.1 76 0.00072 13.7 0.0 1 1 1.7e-05 0.0012 13.0 0.0 18 54 56 89 42 113 0.75 # 16265 # 16933 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.338 2_46 - 686 AAA_19 PF13245.1 76 0.0021 12.2 1.0 1 1 6.3e-05 0.0045 11.2 1.0 13 53 310 346 295 349 0.82 # 46702 # 48759 # -1 # ID=2_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.364 1_24 - 236 Ribosomal_S6 PF01250.12 92 0.0009 13.5 0.7 1 2 2.9e-05 0.0083 10.4 0.1 1 47 101 147 101 159 0.90 # 21471 # 22178 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_24 - 236 Ribosomal_S6 PF01250.12 92 0.0009 13.5 0.7 2 2 0.076 22 -0.5 0.0 35 54 191 210 181 214 0.71 # 21471 # 22178 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 2_46 - 686 AAA_10 PF12846.2 304 4.1e-45 148.8 0.2 1 1 9.6e-47 6.9e-45 148.1 0.2 3 303 309 606 307 607 0.91 # 46702 # 48759 # -1 # ID=2_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.364 2_16 - 389 AAA_10 PF12846.2 304 5.4e-08 26.9 0.1 1 2 3.9e-05 0.0028 11.5 0.0 1 25 144 168 144 193 0.87 # 19769 # 20935 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 2_16 - 389 AAA_10 PF12846.2 304 5.4e-08 26.9 0.1 2 2 8.5e-06 0.00061 13.6 0.0 204 289 215 313 194 321 0.75 # 19769 # 20935 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_78 - 227 AAA_10 PF12846.2 304 3.7e-05 17.6 0.1 1 1 2.8e-06 0.0002 15.2 0.0 6 22 36 52 33 73 0.83 # 76349 # 77029 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.426 2_62 - 1025 AAA_10 PF12846.2 304 4.9e-05 17.2 0.0 1 1 3.8e-06 0.00027 14.8 0.0 3 294 286 675 284 685 0.63 # 66118 # 69192 # -1 # ID=2_62;partial=00;start_type=TTG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.353 1_78 - 227 SbcCD_C PF13558.1 90 0.00072 13.9 0.1 1 1 4.4e-05 0.0063 10.9 0.1 61 89 157 185 118 186 0.79 # 76349 # 77029 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.426 2_46 - 686 SbcCD_C PF13558.1 90 0.0019 12.5 0.0 1 1 4.7e-05 0.0068 10.8 0.0 41 76 503 539 500 552 0.83 # 46702 # 48759 # -1 # ID=2_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.364 1_41 - 447 FAD_oxidored PF12831.2 428 5.9e-08 26.5 0.0 1 1 6.1e-10 8.8e-08 25.9 0.0 3 149 6 176 5 178 0.82 # 41227 # 42567 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.328 2_29 - 410 FAD_oxidored PF12831.2 428 1.4e-05 18.7 0.5 1 1 5.3e-07 7.7e-05 16.3 0.5 1 146 6 162 6 170 0.72 # 28780 # 30009 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.401 2_29 - 410 DAO PF01266.19 358 3.7e-09 30.3 0.0 1 2 7.2e-07 0.0001 15.6 0.0 1 34 6 39 6 52 0.93 # 28780 # 30009 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.401 2_29 - 410 DAO PF01266.19 358 3.7e-09 30.3 0.0 2 2 5.7e-06 0.00081 12.7 0.0 153 216 110 178 93 260 0.79 # 28780 # 30009 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.401 1_41 - 447 DAO PF01266.19 358 0.00038 13.8 0.0 1 2 0.0057 0.82 2.8 0.0 2 39 5 43 4 84 0.78 # 41227 # 42567 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.328 1_41 - 447 DAO PF01266.19 358 0.00038 13.8 0.0 2 2 8.8e-05 0.013 8.8 0.0 161 207 127 181 112 235 0.79 # 41227 # 42567 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.328 3_26 - 251 ResIII PF04851.10 184 7.7e-05 17.0 0.1 1 2 0.036 10 0.3 1.9 63 106 37 80 25 93 0.65 # 9270 # 10022 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.404 3_26 - 251 ResIII PF04851.10 184 7.7e-05 17.0 0.1 2 2 2.7e-07 7.7e-05 17.0 0.1 28 77 102 149 85 190 0.83 # 9270 # 10022 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.404 2_75 - 142 Methyltransf_31 PF13847.1 152 0.00035 14.6 0.2 1 1 2.2e-06 0.00062 13.8 0.1 53 97 6 49 1 52 0.81 # 86700 # 87125 # -1 # ID=2_75;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.315 2_16 - 389 Viral_helicase1 PF01443.13 234 0.0014 12.6 0.1 1 1 1.3e-05 0.0037 11.2 0.0 2 66 148 211 147 212 0.88 # 19769 # 20935 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 2_4 - 102 TIP49 PF06068.8 398 4.1e-06 20.1 0.0 1 1 3e-08 4.4e-06 20.0 0.0 25 81 18 70 9 90 0.83 # 4067 # 4372 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.379 2_6 - 152 TIP49 PF06068.8 398 9.4e-06 18.9 0.5 1 1 3.6e-07 5.1e-05 16.5 0.5 281 389 22 118 16 127 0.68 # 5755 # 6210 # 1 # ID=2_6;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_78 - 227 DEAD PF00270.24 169 0.00036 14.4 0.0 1 1 2.2e-06 0.00063 13.6 0.0 9 150 25 190 18 203 0.71 # 76349 # 77029 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.426 2_4 - 102 DUF815 PF05673.8 250 3.6e-05 17.2 0.0 1 1 2.9e-07 4.1e-05 17.0 0.0 22 74 11 60 2 67 0.82 # 4067 # 4372 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.379 2_16 - 389 DUF815 PF05673.8 250 0.00019 14.8 0.5 1 1 2.4e-06 0.00035 13.9 0.0 52 79 143 170 134 208 0.77 # 19769 # 20935 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 2_29 - 410 Pyr_redox PF00070.22 80 0.0003 15.6 0.2 1 3 0.00023 0.066 8.1 0.0 2 55 7 61 6 77 0.77 # 28780 # 30009 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.401 2_29 - 410 Pyr_redox PF00070.22 80 0.0003 15.6 0.2 2 3 0.028 7.9 1.4 0.0 45 73 109 138 103 146 0.77 # 28780 # 30009 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.401 2_29 - 410 Pyr_redox PF00070.22 80 0.0003 15.6 0.2 3 3 0.019 5.6 1.9 0.0 40 67 334 362 326 375 0.82 # 28780 # 30009 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.401 2_62 - 1025 TrwB_AAD_bind PF10412.4 386 5.3e-08 26.2 0.0 1 2 0.003 0.29 4.0 0.0 13 32 282 301 273 314 0.86 # 66118 # 69192 # -1 # ID=2_62;partial=00;start_type=TTG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.353 2_62 - 1025 TrwB_AAD_bind PF10412.4 386 5.3e-08 26.2 0.0 2 2 5.9e-08 5.7e-06 19.5 0.0 259 337 618 696 556 745 0.76 # 66118 # 69192 # -1 # ID=2_62;partial=00;start_type=TTG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.353 2_16 - 389 TrwB_AAD_bind PF10412.4 386 0.00034 13.7 0.0 1 2 8e-05 0.0076 9.2 0.0 13 39 142 168 135 173 0.86 # 19769 # 20935 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 2_16 - 389 TrwB_AAD_bind PF10412.4 386 0.00034 13.7 0.0 2 2 0.013 1.2 2.0 0.0 238 281 241 289 232 292 0.78 # 19769 # 20935 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 2_46 - 686 TrwB_AAD_bind PF10412.4 386 0.0012 11.8 0.3 1 1 2.7e-05 0.0026 10.8 0.1 12 54 304 346 296 349 0.90 # 46702 # 48759 # -1 # ID=2_46;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.364 1_18 - 223 ParA PF10609.4 81 4.8e-05 17.6 1.3 1 1 3.7e-07 0.00011 16.5 0.5 2 62 158 217 157 221 0.87 # 16265 # 16933 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.338 2_62 - 1025 T4SS-DNA_transf PF02534.9 469 5.5e-11 36.0 0.1 1 1 4.8e-13 1.4e-10 34.7 0.0 240 407 541 710 339 730 0.67 # 66118 # 69192 # -1 # ID=2_62;partial=00;start_type=TTG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.353 2_42 - 199 AAA_32 PF13654.1 509 3.1e-05 17.1 1.3 1 1 1.2e-07 3.6e-05 16.9 1.3 177 272 26 122 21 180 0.72 # 41994 # 42590 # -1 # ID=2_42;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.327 1_41 - 447 Amino_oxidase PF01593.19 450 0.0027 11.1 0.1 1 2 0.0024 0.68 3.2 0.0 1 24 12 35 12 37 0.95 # 41227 # 42567 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.328 1_41 - 447 Amino_oxidase PF01593.19 450 0.0027 11.1 0.1 2 2 0.00037 0.11 5.9 0.0 152 260 58 172 41 179 0.75 # 41227 # 42567 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.328 2_16 - 389 Pox_A32 PF04665.7 241 0.00018 15.2 0.1 1 1 1.2e-06 0.00033 14.4 0.1 10 89 141 224 133 288 0.85 # 19769 # 20935 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 3_9 - 58 PDH PF02153.12 258 0.00016 15.0 0.0 1 1 5.7e-07 0.00016 15.0 0.0 94 152 2 55 1 57 0.87 # 3975 # 4148 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.397 2_16 - 389 Gtr1_RagA PF04670.7 232 0.00085 12.9 0.1 1 1 6.6e-06 0.0019 11.7 0.1 2 24 147 169 146 212 0.76 # 19769 # 20935 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 3_26 - 251 RNA_helicase PF00910.17 107 3e-05 18.6 0.1 1 1 7.9e-06 0.00076 14.1 0.0 3 62 104 176 102 194 0.73 # 9270 # 10022 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.404 2_16 - 389 RNA_helicase PF00910.17 107 0.0013 13.3 0.0 1 1 3.4e-05 0.0033 12.0 0.0 2 56 148 204 147 220 0.74 # 19769 # 20935 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_74 - 238 RNA_helicase PF00910.17 107 0.003 12.2 0.0 1 1 0.00011 0.011 10.4 0.0 19 94 14 88 11 91 0.87 # 73651 # 74364 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.349 2_4 - 102 UPF0079 PF02367.12 123 0.001 13.1 0.2 1 1 6.5e-06 0.0019 12.3 0.2 14 40 38 64 23 70 0.82 # 4067 # 4372 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.379 2_53 - 470 TrkA_N PF02254.13 116 0.00071 14.0 0.1 1 1 5.1e-06 0.0015 13.0 0.1 2 41 7 46 6 83 0.83 # 55226 # 56635 # -1 # ID=2_53;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.389 2_38 - 290 S1 PF00575.18 74 3.1e-09 31.2 5.7 1 2 3e-06 0.00087 13.8 0.0 20 73 138 192 119 193 0.80 # 37522 # 38391 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.362 2_38 - 290 S1 PF00575.18 74 3.1e-09 31.2 5.7 2 2 1.1e-07 3.1e-05 18.5 0.3 2 32 206 239 205 243 0.82 # 37522 # 38391 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.362 3_52 - 274 AAA_24 PF13479.1 213 0.00021 15.3 0.0 1 2 3.1e-05 0.0045 11.0 0.0 12 75 12 135 11 137 0.74 # 23526 # 24347 # 1 # ID=3_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.326 3_52 - 274 AAA_24 PF13479.1 213 0.00021 15.3 0.0 2 2 0.024 3.5 1.5 0.1 142 173 239 270 193 273 0.82 # 23526 # 24347 # 1 # ID=3_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.326 1_78 - 227 AAA_24 PF13479.1 213 0.00054 14.0 0.1 1 2 0.00096 0.14 6.1 0.0 7 20 35 48 33 57 0.87 # 76349 # 77029 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.426 1_78 - 227 AAA_24 PF13479.1 213 0.00054 14.0 0.1 2 2 0.0011 0.16 5.9 0.0 81 141 148 205 143 218 0.72 # 76349 # 77029 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.426 1_18 - 223 AAA_25 PF13481.1 194 0.00011 16.0 0.0 1 1 1.3e-06 0.00019 15.3 0.0 41 150 56 164 46 178 0.78 # 16265 # 16933 # 1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.338 1_78 - 227 AAA_25 PF13481.1 194 0.00036 14.4 0.0 1 1 1e-05 0.0014 12.4 0.0 30 50 28 48 19 77 0.86 # 76349 # 77029 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.426 2_6 - 152 AAA_5 PF07728.9 139 0.00029 15.0 0.0 1 1 1.5e-06 0.00043 14.4 0.0 65 95 19 49 2 75 0.83 # 5755 # 6210 # 1 # ID=2_6;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/c3db2cdf-99ae-47a7-82b3-5398c3f16d7d # Target file: checkm_output/bins/pGCA_000789315.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000789315.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c3db2cdf-99ae-47a7-82b3-5398c3f16d7d checkm_output/bins/pGCA_000789315.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:42:21 2020 # [ok]