# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 504 AAA_22 PF13401.1 131 4.3e-08 22.1 0.0 1 2 4.8e-08 2.4e-07 19.7 0.0 5 99 178 294 174 320 0.66 # 1850 # 3361 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=15bp;gc_cont=0.424 1_2 - 504 AAA_22 PF13401.1 131 4.3e-08 22.1 0.0 2 2 0.047 0.24 0.3 0.0 56 91 292 330 291 332 0.77 # 1850 # 3361 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=15bp;gc_cont=0.424 1_2 - 504 Arch_ATPase PF01637.13 234 7.2e-06 14.5 0.4 1 1 3.4e-06 1.7e-05 13.2 0.0 14 131 171 295 162 338 0.73 # 1850 # 3361 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=15bp;gc_cont=0.424 1_2 - 504 AAA_16 PF13191.1 185 1.2e-06 17.3 0.6 1 2 2.9e-06 1.5e-05 13.7 0.1 24 51 177 204 164 331 0.90 # 1850 # 3361 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=15bp;gc_cont=0.424 1_2 - 504 AAA_16 PF13191.1 185 1.2e-06 17.3 0.6 2 2 0.02 0.1 1.2 0.0 52 120 384 470 370 498 0.62 # 1850 # 3361 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=15bp;gc_cont=0.424 1_2 - 504 AAA_18 PF13238.1 129 1.7e-05 13.9 0.0 1 1 7.9e-06 3.9e-05 12.7 0.0 1 42 180 238 180 275 0.64 # 1850 # 3361 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=15bp;gc_cont=0.424 1_2 - 504 AAA PF00004.24 132 6.9e-07 18.3 2.7 1 1 2e-07 9.8e-07 17.8 0.5 1 118 180 341 180 356 0.62 # 1850 # 3361 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=15bp;gc_cont=0.424 1_2 - 504 FtsK_SpoIIIE PF01580.13 205 5.1e-16 47.4 0.1 1 1 2.6e-16 1.3e-15 46.0 0.1 40 204 179 337 159 338 0.87 # 1850 # 3361 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=15bp;gc_cont=0.424 1_2 - 504 AAA_19 PF13245.1 76 2.1e-05 13.0 0.0 1 1 1.5e-05 7.5e-05 11.2 0.0 10 49 178 218 170 220 0.77 # 1850 # 3361 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=15bp;gc_cont=0.424 1_2 - 504 AAA_10 PF12846.2 304 2.4e-06 15.8 0.0 1 2 0.00026 0.0013 6.8 0.0 5 47 181 231 180 248 0.79 # 1850 # 3361 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=15bp;gc_cont=0.424 1_2 - 504 AAA_10 PF12846.2 304 2.4e-06 15.8 0.0 2 2 0.00041 0.0021 6.1 0.1 217 292 279 363 243 369 0.78 # 1850 # 3361 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=15bp;gc_cont=0.424 1_2 - 504 DEAD PF00270.24 169 1.5e-05 13.2 0.2 1 1 1.2e-05 6e-05 11.2 0.2 17 143 180 314 165 335 0.58 # 1850 # 3361 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=15bp;gc_cont=0.424 1_2 - 504 NACHT PF05729.7 166 7.8e-07 17.6 0.0 1 1 3.2e-07 1.6e-06 16.5 0.0 2 129 179 333 178 351 0.76 # 1850 # 3361 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=15bp;gc_cont=0.424 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/38591b58-ad92-4dca-8b50-e7c27ee46992 # Target file: checkm_output/bins/pGCA_000761135.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000761135.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/38591b58-ad92-4dca-8b50-e7c27ee46992 checkm_output/bins/pGCA_000761135.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:42:11 2020 # [ok]