# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_24 - 155 ThiI PF02568.9 197 0.00037 12.0 1.1 1 1 1.1e-05 0.00061 11.3 1.1 39 106 8 75 4 81 0.89 # 16249 # 16713 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.226 1_14 - 288 cobW PF02492.14 178 0.00018 13.0 0.1 1 1 9.3e-06 0.0005 11.6 0.1 3 22 32 51 30 77 0.84 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_13 - 571 ABC_ATPase PF09818.4 448 8.5e-05 13.2 0.0 1 2 4.2e-05 0.0023 8.5 0.0 227 266 336 379 320 382 0.74 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_13 - 571 ABC_ATPase PF09818.4 448 8.5e-05 13.2 0.0 2 2 0.0033 0.18 2.3 0.0 304 351 449 497 440 530 0.91 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_13 - 571 IstB_IS21 PF01695.12 178 0.00013 13.4 0.3 1 2 0.00013 0.0072 7.8 0.0 38 62 347 372 331 377 0.82 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_13 - 571 IstB_IS21 PF01695.12 178 0.00013 13.4 0.3 2 2 0.0029 0.16 3.4 0.0 106 146 484 523 468 537 0.71 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_6 - 111 YhjQ PF06564.7 244 1.7e-06 19.6 0.0 1 1 7.3e-08 2e-06 19.3 0.0 1 85 1 89 1 106 0.78 # 2728 # 3060 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.282 1_7 - 113 YhjQ PF06564.7 244 3.9e-05 15.1 0.0 1 1 1.8e-06 5e-05 14.8 0.0 107 152 3 49 1 56 0.87 # 3057 # 3395 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.280 1_13 - 571 NB-ARC PF00931.17 287 1.9e-06 18.9 0.2 1 2 1.4e-05 0.00039 11.3 0.1 7 36 345 374 341 378 0.89 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_13 - 571 NB-ARC PF00931.17 287 1.9e-06 18.9 0.2 2 2 0.0017 0.047 4.5 0.0 212 269 400 462 396 472 0.70 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_14 - 288 NB-ARC PF00931.17 287 6.7e-05 13.8 0.6 1 2 2.5e-06 6.7e-05 13.8 0.6 17 42 27 52 18 62 0.85 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_14 - 288 NB-ARC PF00931.17 287 6.7e-05 13.8 0.6 2 2 0.053 1.4 -0.4 0.2 230 278 71 123 59 130 0.66 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_13 - 571 AAA_22 PF13401.1 131 3.9e-07 22.3 0.5 1 1 2.2e-07 5.9e-06 18.5 0.5 3 116 356 519 354 530 0.63 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_14 - 288 AAA_22 PF13401.1 131 3.3e-05 16.1 0.2 1 1 4.2e-06 0.00011 14.4 0.2 4 29 29 54 26 95 0.84 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_13 - 571 SRP54 PF00448.17 196 0.0001 13.8 0.0 1 1 6.9e-06 0.00019 13.0 0.0 2 42 358 398 357 425 0.90 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_14 - 288 SRP54 PF00448.17 196 0.00011 13.7 0.2 1 1 2.8e-05 0.00075 11.0 0.2 3 28 31 56 29 66 0.82 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_14 - 288 AAA_15 PF13175.1 415 3.1e-11 34.9 10.9 1 2 1.3e-07 7e-06 17.3 10.3 12 96 19 115 4 144 0.84 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_14 - 288 AAA_15 PF13175.1 415 3.1e-11 34.9 10.9 2 2 1.7e-09 9.2e-08 23.5 0.0 372 410 151 189 131 194 0.92 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_14 - 288 AAA_17 PF13207.1 121 1.7e-07 24.2 0.7 1 1 1.6e-07 1.7e-06 20.9 0.7 1 35 31 81 31 285 0.79 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_13 - 571 AAA_17 PF13207.1 121 3e-07 23.3 0.0 1 1 6.8e-08 7.4e-07 22.1 0.0 3 32 361 387 359 461 0.62 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 2_12 - 163 AAA_17 PF13207.1 121 2.8e-06 20.2 0.3 1 1 3.2e-07 3.5e-06 19.9 0.3 23 112 24 121 18 147 0.84 # 10017 # 10505 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_6 - 111 AAA_17 PF13207.1 121 0.00036 13.4 0.0 1 1 3.7e-05 0.0004 13.3 0.0 9 60 12 67 6 107 0.61 # 2728 # 3060 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.282 5_1 - 87 AAA_17 PF13207.1 121 0.00037 13.4 0.7 1 1 3.6e-05 0.00039 13.3 0.7 27 100 4 84 1 87 0.73 # 2 # 262 # 1 # ID=5_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_14 - 288 AAA_21 PF13304.1 303 1.1e-14 47.0 10.1 1 3 5.9e-09 1.6e-07 23.5 1.7 3 78 33 104 31 114 0.82 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_14 - 288 AAA_21 PF13304.1 303 1.1e-14 47.0 10.1 2 3 7.5e-10 2e-08 26.5 0.0 232 300 126 192 116 195 0.84 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_14 - 288 AAA_21 PF13304.1 303 1.1e-14 47.0 10.1 3 3 0.095 2.6 -0.1 1.6 125 186 221 274 195 287 0.34 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_13 - 571 AAA_21 PF13304.1 303 1.8e-07 23.4 2.4 1 1 6.6e-09 1.8e-07 23.4 2.4 1 294 359 523 359 524 0.63 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_14 - 288 Miro PF08477.8 119 7.9e-05 15.2 0.8 1 1 6.3e-06 0.00034 13.2 0.2 2 41 32 70 32 145 0.78 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_14 - 288 MobB PF03205.9 140 2e-05 16.3 0.2 1 1 2.3e-06 6.2e-05 14.8 0.2 2 25 31 54 30 63 0.90 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_13 - 571 MobB PF03205.9 140 0.00012 13.9 0.2 1 1 1.7e-05 0.00045 12.0 0.2 2 20 359 377 358 402 0.84 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_6 - 111 ArsA_ATPase PF02374.10 305 4.9e-09 27.6 0.0 1 1 9.1e-11 4.9e-09 27.6 0.0 3 72 3 75 1 100 0.82 # 2728 # 3060 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.282 1_13 - 571 T2SE PF00437.15 272 2.7e-05 15.1 0.0 1 1 1.1e-06 6.1e-05 14.0 0.0 97 151 326 380 293 397 0.80 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_26 - 61 TIGR00810 TIGR00810 73 0.051 5.5 18.6 1 2 0.002 0.11 4.4 6.7 1 17 5 21 5 30 0.85 # 17619 # 17801 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.213 1_26 - 61 TIGR00810 TIGR00810 73 0.051 5.5 18.6 2 2 0.00022 0.012 7.5 4.8 41 73 24 57 22 57 0.84 # 17619 # 17801 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.213 1_14 - 288 Zeta_toxin PF06414.7 201 0.00011 13.3 0.2 1 2 2.4e-05 0.00065 10.8 0.0 19 43 32 57 20 69 0.81 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_14 - 288 Zeta_toxin PF06414.7 201 0.00011 13.3 0.2 2 2 0.052 1.4 -0.0 0.0 113 141 210 236 166 281 0.75 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_13 - 571 Zeta_toxin PF06414.7 201 0.00032 11.8 0.0 1 1 2.4e-05 0.00066 10.8 0.0 14 52 355 394 344 419 0.82 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_13 - 571 SMC_N PF02463.14 220 2.4e-12 38.5 3.3 1 2 1.7e-05 0.00045 11.5 0.3 23 42 356 375 338 384 0.79 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_13 - 571 SMC_N PF02463.14 220 2.4e-12 38.5 3.3 2 2 2.1e-10 5.7e-09 27.5 0.2 110 209 387 537 376 544 0.84 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_14 - 288 SMC_N PF02463.14 220 7.6e-08 23.8 6.5 1 3 3.5e-09 9.3e-08 23.5 1.7 16 205 20 197 8 211 0.72 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_14 - 288 SMC_N PF02463.14 220 7.6e-08 23.8 6.5 2 3 0.087 2.3 -0.7 0.1 84 207 214 235 204 249 0.57 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_14 - 288 SMC_N PF02463.14 220 7.6e-08 23.8 6.5 3 3 0.077 2.1 -0.5 0.0 50 72 245 267 236 280 0.76 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_6 - 111 VirC1 PF07015.6 231 0.00011 13.3 0.0 1 1 2.8e-06 0.00015 12.9 0.0 1 23 1 22 1 51 0.76 # 2728 # 3060 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.282 1_6 - 111 Fer4_NifH PF00142.13 273 8.2e-05 13.9 0.1 1 1 1.8e-06 9.7e-05 13.6 0.1 8 49 10 52 3 81 0.83 # 2728 # 3060 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.282 1_13 - 571 AAA_16 PF13191.1 185 1.9e-05 16.7 0.0 1 1 3.1e-06 8.4e-05 14.6 0.0 25 48 358 380 344 426 0.77 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_14 - 288 AAA_16 PF13191.1 185 0.00042 12.4 0.0 1 1 2.5e-05 0.00067 11.7 0.0 23 60 28 66 17 149 0.82 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_14 - 288 AAA_23 PF13476.1 202 2.4e-05 16.7 20.8 1 1 0.00012 0.0031 9.8 20.8 11 175 20 271 9 287 0.52 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_13 - 571 AAA_23 PF13476.1 202 0.00049 12.5 18.4 1 1 1.7e-06 4.7e-05 15.8 10.7 11 40 348 378 329 567 0.71 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_13 - 571 AAA_18 PF13238.1 129 1.5e-06 20.6 0.3 1 1 9.4e-07 1.7e-05 17.2 0.1 2 23 361 393 361 465 0.65 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_6 - 111 AAA_18 PF13238.1 129 5.3e-05 15.6 0.0 1 1 3.5e-06 6.3e-05 15.3 0.0 8 65 12 66 10 102 0.67 # 2728 # 3060 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.282 1_14 - 288 AAA_18 PF13238.1 129 0.0007 12.0 8.3 1 1 0.00019 0.0035 9.7 4.2 1 68 32 104 32 252 0.72 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_6 - 111 CbiA PF01656.18 195 1.8e-14 45.6 0.1 1 1 7.6e-16 2e-14 45.4 0.1 1 88 4 97 4 108 0.68 # 2728 # 3060 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.282 1_7 - 113 CbiA PF01656.18 195 7e-13 40.4 0.0 1 1 2.9e-14 7.7e-13 40.3 0.0 83 176 1 98 1 110 0.87 # 3057 # 3395 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.280 1_13 - 571 AAA_14 PF13173.1 128 1.6e-06 20.1 0.5 1 2 6.4e-07 1.7e-05 16.8 0.1 1 47 356 402 356 431 0.70 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_13 - 571 AAA_14 PF13173.1 128 1.6e-06 20.1 0.5 2 2 0.086 2.3 0.2 0.0 50 73 479 498 456 534 0.69 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_14 - 288 AAA_14 PF13173.1 128 3.3e-06 19.1 0.2 1 1 1.2e-07 3.3e-06 19.1 0.2 2 65 29 99 28 157 0.74 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_13 - 571 AAA_29 PF13555.1 62 6.5e-07 20.9 0.2 1 1 5.4e-08 1.5e-06 19.8 0.2 16 52 351 387 344 393 0.76 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_14 - 288 AAA_29 PF13555.1 62 6.2e-06 17.8 0.1 1 1 4.3e-07 1.2e-05 16.9 0.1 14 50 21 56 15 62 0.75 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_14 - 288 AAA PF00004.24 132 1.6e-05 17.1 1.5 1 1 1.4e-06 3.7e-05 16.0 1.0 3 37 34 70 32 229 0.82 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_13 - 571 AAA PF00004.24 132 0.0024 10.1 3.5 1 1 0.00035 0.0094 8.2 0.5 3 53 362 421 360 541 0.74 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_13 - 571 DUF258 PF03193.11 161 2.7e-08 25.2 0.1 1 1 2.2e-09 5.8e-08 24.1 0.1 20 67 341 389 327 394 0.81 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_14 - 288 DUF258 PF03193.11 161 2.7e-06 18.7 0.1 1 1 3.5e-07 9.5e-06 16.9 0.1 20 66 13 60 2 68 0.85 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_7 - 113 AAA_31 PF13614.1 157 2.9e-08 25.8 0.2 1 2 4.1e-09 1.1e-07 23.9 0.1 107 150 1 46 1 54 0.91 # 3057 # 3395 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.280 1_7 - 113 AAA_31 PF13614.1 157 2.9e-08 25.8 0.2 2 2 0.061 1.6 0.6 0.0 85 133 53 103 45 110 0.56 # 3057 # 3395 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.280 1_6 - 111 AAA_31 PF13614.1 157 4.8e-08 25.1 0.0 1 1 2.1e-09 5.6e-08 24.9 0.0 9 91 10 87 2 104 0.74 # 2728 # 3060 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.282 1_13 - 571 NTPase_1 PF03266.10 168 0.00042 12.1 1.3 1 3 0.0013 0.072 4.8 0.2 3 17 361 375 359 389 0.86 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_13 - 571 NTPase_1 PF03266.10 168 0.00042 12.1 1.3 2 3 0.019 1 1.1 0.0 110 147 399 432 397 445 0.78 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_13 - 571 NTPase_1 PF03266.10 168 0.00042 12.1 1.3 3 3 0.006 0.32 2.7 0.1 68 136 459 528 441 544 0.77 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_14 - 288 AAA_33 PF13671.1 143 6.6e-05 14.9 0.0 1 1 2.6e-06 0.00014 13.8 0.0 2 24 32 54 31 159 0.76 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_13 - 571 AAA_30 PF13604.1 196 3.3e-05 15.5 0.0 1 2 1.2e-05 0.00032 12.3 0.0 15 43 354 382 350 393 0.80 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_13 - 571 AAA_30 PF13604.1 196 3.3e-05 15.5 0.0 2 2 0.047 1.3 0.6 0.0 90 109 478 503 456 524 0.69 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_14 - 288 AAA_30 PF13604.1 196 6.8e-05 14.5 0.0 1 1 5e-06 0.00013 13.6 0.0 17 49 28 60 23 66 0.82 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_13 - 571 ABC_tran PF00005.22 137 4.4e-36 116.2 0.0 1 1 3.6e-37 9.7e-36 115.1 0.0 1 137 347 497 347 497 0.94 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_14 - 288 ABC_tran PF00005.22 137 2.4e-32 104.1 2.0 1 2 1.4e-33 3.8e-32 103.5 0.0 1 136 19 158 19 159 0.94 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_14 - 288 ABC_tran PF00005.22 137 2.4e-32 104.1 2.0 2 2 0.094 2.5 0.4 0.4 25 74 167 233 158 281 0.46 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_14 - 288 TIGR03263 TIGR03263 180 2.4e-05 15.7 1.8 1 2 3e-06 0.00016 13.0 0.1 6 86 34 113 29 119 0.88 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_14 - 288 TIGR03263 TIGR03263 180 2.4e-05 15.7 1.8 2 2 0.0073 0.39 2.0 0.2 53 101 178 226 164 252 0.75 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_14 - 288 ATP-synt_ab PF00006.20 215 0.00016 13.2 0.0 1 1 4.5e-06 0.00024 12.6 0.0 7 49 21 76 18 247 0.73 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_13 - 571 AAA_19 PF13245.1 76 6.2e-06 18.0 0.0 1 1 6e-07 1.6e-05 16.7 0.0 9 35 356 381 350 408 0.87 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_14 - 288 AAA_19 PF13245.1 76 0.0007 11.4 0.0 1 1 6.6e-05 0.0018 10.1 0.0 10 35 29 53 24 69 0.82 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_13 - 571 AAA_10 PF12846.2 304 7.4e-05 14.3 0.1 1 1 7.2e-06 0.0002 12.9 0.1 2 26 358 382 357 395 0.80 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_14 - 288 AAA_10 PF12846.2 304 0.0002 12.9 0.3 1 2 3.2e-05 0.00085 10.8 0.2 6 26 34 54 30 64 0.82 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_14 - 288 AAA_10 PF12846.2 304 0.0002 12.9 0.3 2 2 0.071 1.9 -0.2 0.0 219 267 147 195 104 267 0.73 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_13 - 571 SbcCD_C PF13558.1 90 0.00019 13.4 0.2 1 1 3.7e-05 0.001 11.1 0.2 62 83 485 506 455 513 0.83 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 1_14 - 288 SbcCD_C PF13558.1 90 0.00053 12.0 0.0 1 1 3.7e-05 0.001 11.1 0.0 55 88 146 173 129 175 0.77 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_14 - 288 ArgK PF03308.11 267 7.5e-05 13.6 0.0 1 1 3.2e-06 0.00017 12.4 0.0 19 54 19 54 5 61 0.84 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_14 - 288 RNA_helicase PF00910.17 107 0.00022 13.5 2.7 1 1 5e-06 0.00027 13.2 0.9 3 48 34 93 32 136 0.63 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_14 - 288 UPF0079 PF02367.12 123 1.2e-06 20.3 0.2 1 1 5.6e-08 3e-06 18.9 0.2 11 43 25 57 18 132 0.84 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_14 - 288 NACHT PF05729.7 166 4.4e-05 15.2 1.9 1 1 1.1e-06 6.2e-05 14.7 0.3 3 25 32 54 30 59 0.88 # 8018 # 8881 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.252 1_13 - 571 AAA_28 PF13521.1 163 0.00059 11.9 0.2 1 1 3e-05 0.0016 10.4 0.2 3 21 361 379 359 392 0.87 # 6208 # 7920 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/7e80649f-efa1-43f9-b7c6-f8cd8ec544eb # Target file: checkm_output/bins/pGCA_000759555.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000759555.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7e80649f-efa1-43f9-b7c6-f8cd8ec544eb checkm_output/bins/pGCA_000759555.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:42:10 2020 # [ok]