# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_23 - 315 Mg_chelatase PF01078.16 207 0.00016 12.3 0.1 1 1 2.2e-05 0.00039 11.0 0.0 9 55 130 176 125 205 0.82 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_1 - 129 Mg_chelatase PF01078.16 207 0.00023 11.8 0.0 1 1 1.9e-05 0.00033 11.3 0.0 27 92 3 68 1 78 0.72 # 3 # 389 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.323 1_23 - 315 cobW PF02492.14 178 0.00011 13.0 0.1 1 1 1e-05 0.00018 12.4 0.1 4 35 147 181 144 212 0.73 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_15 - 229 cobW PF02492.14 178 0.00039 11.3 0.8 1 1 0.00029 0.0051 7.7 0.8 10 168 11 163 2 173 0.53 # 8562 # 9248 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_15 - 229 Thymidylate_kin PF02223.12 186 4.6e-06 17.5 0.5 1 2 8.9e-06 0.00031 11.6 0.0 6 42 11 49 10 53 0.77 # 8562 # 9248 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_15 - 229 Thymidylate_kin PF02223.12 186 4.6e-06 17.5 0.5 2 2 0.0021 0.075 3.8 0.4 139 166 193 222 156 227 0.75 # 8562 # 9248 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_23 - 315 ABC_ATPase PF09818.4 448 9.2e-05 12.5 0.0 1 1 3.7e-06 0.00013 12.0 0.0 227 298 125 196 109 207 0.74 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_23 - 315 IstB_IS21 PF01695.12 178 1.9e-05 15.6 0.0 1 1 7.5e-07 2.6e-05 15.1 0.0 24 67 122 163 110 207 0.77 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_15 - 229 MipZ PF09140.6 261 1.2e-16 51.9 1.0 1 3 3.6e-10 6.2e-09 26.6 0.0 2 48 2 47 1 55 0.85 # 8562 # 9248 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_15 - 229 MipZ PF09140.6 261 1.2e-16 51.9 1.0 2 3 6.1e-09 1.1e-07 22.6 0.1 83 141 64 122 46 133 0.87 # 8562 # 9248 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_15 - 229 MipZ PF09140.6 261 1.2e-16 51.9 1.0 3 3 0.045 0.78 0.1 0.0 127 169 131 173 124 195 0.77 # 8562 # 9248 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_9 - 236 MipZ PF09140.6 261 4.3e-05 14.1 0.0 1 1 3.9e-06 6.9e-05 13.4 0.0 5 46 7 48 3 83 0.90 # 5827 # 6534 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_15 - 229 YhjQ PF06564.7 244 7.4e-05 13.6 0.0 1 1 4.9e-06 0.00017 12.4 0.0 10 41 9 40 1 53 0.90 # 8562 # 9248 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_3 - 120 SSB PF00436.20 104 1.1e-24 77.8 0.2 1 1 3.9e-26 1.4e-24 77.5 0.2 2 103 3 98 2 99 0.97 # 1299 # 1658 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.289 1_23 - 315 DUF87 PF01935.12 229 2.9e-06 18.6 0.0 1 1 5.7e-07 6.6e-06 17.5 0.0 26 58 146 179 114 184 0.94 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_26 - 820 DUF87 PF01935.12 229 1.7e-05 16.1 0.3 1 1 1.9e-05 0.00022 12.5 0.0 24 59 455 490 436 491 0.77 # 16171 # 18630 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.320 1_1 - 129 DUF87 PF01935.12 229 0.00012 13.3 0.1 1 1 1.7e-05 0.0002 12.6 0.1 28 48 3 23 1 95 0.93 # 3 # 389 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.323 1_1 - 129 NB-ARC PF00931.17 287 2e-05 14.9 0.0 1 1 7.6e-07 2.7e-05 14.5 0.0 22 53 1 30 1 64 0.81 # 3 # 389 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.323 1_23 - 315 Septin PF00735.13 281 9.2e-05 12.9 0.5 1 2 0.093 3.3 -2.0 0.0 171 198 109 136 107 140 0.76 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_23 - 315 Septin PF00735.13 281 9.2e-05 12.9 0.5 2 2 5.5e-06 0.00019 11.9 0.1 5 27 144 166 138 205 0.73 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_26 - 820 AAA_22 PF13401.1 131 1.2e-08 26.7 0.1 1 2 2.3e-06 2e-05 16.2 0.0 5 37 455 492 451 530 0.75 # 16171 # 18630 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.320 1_26 - 820 AAA_22 PF13401.1 131 1.2e-08 26.7 0.1 2 2 0.0017 0.015 6.9 0.0 71 122 632 686 568 691 0.81 # 16171 # 18630 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.320 1_15 - 229 AAA_22 PF13401.1 131 6.3e-05 14.6 0.1 1 1 2.5e-05 0.00021 12.9 0.0 14 88 11 78 5 107 0.77 # 8562 # 9248 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_1 - 129 AAA_22 PF13401.1 131 9.4e-05 14.0 0.0 1 1 2.3e-05 0.0002 12.9 0.0 9 29 3 23 1 37 0.87 # 3 # 389 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.323 1_23 - 315 AAA_22 PF13401.1 131 0.00012 13.6 0.0 1 1 3e-05 0.00026 12.6 0.0 3 28 142 167 138 220 0.74 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_1 - 129 ADK PF00406.17 151 0.00029 12.1 0.0 1 1 1.1e-05 0.0004 11.7 0.0 1 23 3 25 3 56 0.88 # 3 # 389 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.323 1_23 - 315 ATP_bind_1 PF03029.12 238 1.2e-05 16.3 0.0 1 1 6.1e-07 2.1e-05 15.5 0.0 1 21 148 168 148 183 0.87 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_19 - 150 RRM_1 PF00076.17 70 2e-05 15.7 0.7 1 2 2.5e-05 0.00087 10.4 0.1 13 44 34 65 33 72 0.91 # 11653 # 12102 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.202 1_19 - 150 RRM_1 PF00076.17 70 2e-05 15.7 0.7 2 2 0.0046 0.16 3.1 0.0 45 69 84 108 80 109 0.93 # 11653 # 12102 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.202 1_15 - 229 SRP54 PF00448.17 196 2.3e-09 28.4 0.1 1 2 3.5e-10 1.2e-08 26.0 0.0 11 98 11 94 6 109 0.83 # 8562 # 9248 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_15 - 229 SRP54 PF00448.17 196 2.3e-09 28.4 0.1 2 2 0.069 2.4 -1.1 0.0 96 114 146 164 104 197 0.67 # 8562 # 9248 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_1 - 129 AAA_17 PF13207.1 121 2.6e-06 19.7 0.1 1 1 3.6e-07 3.2e-06 19.5 0.1 2 33 1 32 1 122 0.71 # 3 # 389 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.323 1_23 - 315 AAA_17 PF13207.1 121 3e-06 19.5 0.0 1 1 8.3e-07 7.2e-06 18.3 0.0 2 37 146 180 145 249 0.78 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_9 - 236 AAA_17 PF13207.1 121 4.4e-06 19.0 0.4 1 1 1.9e-06 1.7e-05 17.1 0.4 4 99 8 123 6 229 0.74 # 5827 # 6534 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_15 - 229 AAA_17 PF13207.1 121 5.9e-05 15.4 0.8 1 1 3.9e-05 0.00034 12.9 0.8 9 24 11 29 10 225 0.82 # 8562 # 9248 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_23 - 315 Miro PF08477.8 119 0.00013 13.9 0.0 1 1 1.6e-05 0.00057 11.9 0.0 2 25 146 169 145 213 0.73 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_23 - 315 MobB PF03205.9 140 3.6e-05 14.9 0.0 1 1 2e-06 6.9e-05 14.0 0.0 3 22 146 165 144 184 0.88 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_15 - 229 ArsA_ATPase PF02374.10 305 7.7e-12 36.2 0.3 1 1 1e-12 1.8e-11 35.0 0.0 6 109 6 110 1 130 0.82 # 8562 # 9248 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_9 - 236 ArsA_ATPase PF02374.10 305 3.2e-05 14.4 0.1 1 1 4.1e-06 7.2e-05 13.3 0.0 4 41 6 43 3 62 0.89 # 5827 # 6534 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_23 - 315 T2SE PF00437.15 272 3.1e-81 263.6 0.0 1 1 1.1e-82 3.8e-81 263.3 0.0 7 269 23 285 18 288 0.98 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_23 - 315 Zeta_toxin PF06414.7 201 3.8e-06 17.5 0.0 1 1 6.6e-07 7.6e-06 16.5 0.0 14 52 141 182 126 209 0.85 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_15 - 229 Zeta_toxin PF06414.7 201 7.7e-05 13.2 0.3 1 1 2.9e-05 0.00034 11.1 0.0 25 56 10 43 5 102 0.68 # 8562 # 9248 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_1 - 129 Zeta_toxin PF06414.7 201 0.00015 12.3 0.0 1 1 1.8e-05 0.00021 11.8 0.0 23 43 5 27 1 36 0.82 # 3 # 389 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.323 1_15 - 229 VirC1 PF07015.6 231 2.6e-11 34.4 0.1 1 1 1.6e-12 5.8e-11 33.3 0.1 4 150 3 145 1 195 0.77 # 8562 # 9248 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_15 - 229 Fer4_NifH PF00142.13 273 9.2e-07 19.6 0.0 1 1 1.1e-07 1.9e-06 18.6 0.0 5 60 6 60 2 92 0.77 # 8562 # 9248 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_9 - 236 Fer4_NifH PF00142.13 273 5.7e-06 17.0 0.0 1 1 4.6e-07 8.1e-06 16.5 0.0 5 75 8 76 4 116 0.83 # 5827 # 6534 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_26 - 820 Arch_ATPase PF01637.13 234 4.8e-05 14.5 4.7 1 1 1.6e-06 5.4e-05 14.3 0.0 23 61 457 495 455 691 0.85 # 16171 # 18630 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.320 1_23 - 315 AAA_16 PF13191.1 185 0.00025 12.5 0.2 1 1 2.1e-05 0.00074 10.9 0.1 24 46 143 165 133 180 0.86 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_26 - 820 AAA_23 PF13476.1 202 0.00011 14.0 0.4 1 1 6.3e-06 0.00011 14.0 0.4 20 40 455 475 445 494 0.88 # 16171 # 18630 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.320 1_23 - 315 AAA_23 PF13476.1 202 0.00017 13.4 6.8 1 2 0.019 0.33 2.6 0.7 101 175 10 137 2 146 0.52 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_23 - 315 AAA_23 PF13476.1 202 0.00017 13.4 6.8 2 2 0.0001 0.0018 10.0 4.9 21 39 145 163 122 184 0.85 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_15 - 229 AAA_18 PF13238.1 129 1.4e-06 20.1 0.2 1 1 7.8e-07 9.1e-06 17.5 0.0 8 85 11 114 9 131 0.71 # 8562 # 9248 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_1 - 129 AAA_18 PF13238.1 129 3.6e-05 15.5 0.0 1 1 4.5e-06 5.3e-05 15.0 0.0 3 32 3 39 1 87 0.69 # 3 # 389 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.323 1_23 - 315 AAA_18 PF13238.1 129 0.0001 14.1 2.5 1 1 1.7e-05 0.0002 13.2 0.7 1 28 146 180 146 203 0.73 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_15 - 229 CbiA PF01656.18 195 6.4e-27 85.6 0.7 1 1 1.5e-27 1.7e-26 84.2 0.7 1 164 3 150 3 192 0.74 # 8562 # 9248 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_9 - 236 CbiA PF01656.18 195 5e-09 27.2 0.4 1 1 6.9e-10 8.1e-09 26.5 0.3 2 49 6 58 5 148 0.59 # 5827 # 6534 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_26 - 820 CbiA PF01656.18 195 3.7e-05 14.6 0.0 1 1 9e-06 0.00011 13.1 0.0 8 63 463 549 457 599 0.65 # 16171 # 18630 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.320 1_23 - 315 KaiC PF06745.8 227 7.6e-07 19.8 0.1 1 1 4.3e-08 1.5e-06 18.8 0.1 10 38 134 162 130 187 0.87 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_26 - 820 AAA_14 PF13173.1 128 1.2e-05 16.7 0.1 1 2 0.00013 0.0044 8.4 0.0 5 41 457 493 455 513 0.85 # 16171 # 18630 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.320 1_26 - 820 AAA_14 PF13173.1 128 1.2e-05 16.7 0.1 2 2 0.0023 0.081 4.3 0.0 29 103 610 695 597 708 0.64 # 16171 # 18630 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.320 1_23 - 315 AAA_29 PF13555.1 62 3.2e-06 18.1 0.0 1 1 3.7e-07 6.4e-06 17.1 0.0 21 44 142 164 133 177 0.82 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_26 - 820 AAA_29 PF13555.1 62 2.7e-05 15.1 0.0 1 1 5.1e-06 9e-05 13.5 0.0 23 42 455 473 445 489 0.83 # 16171 # 18630 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.320 1_1 - 129 AAA PF00004.24 132 4.9e-05 15.0 0.0 1 1 3.5e-06 6.1e-05 14.7 0.0 3 38 3 42 1 76 0.76 # 3 # 389 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.323 1_26 - 820 AAA PF00004.24 132 0.00014 13.5 1.3 1 2 0.0054 0.095 4.4 0.0 36 74 288 331 260 340 0.62 # 16171 # 18630 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.320 1_26 - 820 AAA PF00004.24 132 0.00014 13.5 1.3 2 2 0.0043 0.074 4.7 0.0 2 22 458 478 457 518 0.82 # 16171 # 18630 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.320 1_23 - 315 Sigma54_activat PF00158.21 168 4.3e-05 14.4 0.0 1 1 2.1e-06 7.2e-05 13.7 0.0 9 48 130 169 123 198 0.78 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_1 - 129 MMR_HSR1 PF01926.18 116 5.5e-05 14.6 0.1 1 1 2.1e-06 7.3e-05 14.2 0.1 4 55 3 78 1 125 0.52 # 3 # 389 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.323 1_8 - 533 TraG-D_C PF12696.2 128 3.5e-31 99.2 0.5 1 1 1.8e-32 6.2e-31 98.4 0.1 2 127 356 476 355 477 0.90 # 4217 # 5815 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.322 1_15 - 229 AAA_31 PF13614.1 157 3.7e-14 44.4 0.1 1 3 9.4e-11 1.7e-09 29.3 0.0 2 48 2 48 1 71 0.85 # 8562 # 9248 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_15 - 229 AAA_31 PF13614.1 157 3.7e-14 44.4 0.1 2 3 0.00014 0.0025 9.2 0.0 111 151 73 112 67 117 0.80 # 8562 # 9248 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_15 - 229 AAA_31 PF13614.1 157 3.7e-14 44.4 0.1 3 3 0.014 0.25 2.7 0.0 50 81 153 183 132 216 0.78 # 8562 # 9248 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_9 - 236 AAA_31 PF13614.1 157 8.3e-05 14.0 0.1 1 2 4.3e-05 0.00074 10.9 0.0 5 80 7 76 3 112 0.71 # 5827 # 6534 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_9 - 236 AAA_31 PF13614.1 157 8.3e-05 14.0 0.1 2 2 0.052 0.91 0.9 0.0 30 63 176 210 166 226 0.75 # 5827 # 6534 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_1 - 129 NTPase_1 PF03266.10 168 5.1e-05 14.5 0.0 1 1 2.2e-06 7.7e-05 13.9 0.0 4 30 3 26 1 110 0.89 # 3 # 389 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.323 1_23 - 315 AAA_33 PF13671.1 143 3e-05 15.4 0.1 1 1 5.9e-06 6.9e-05 14.2 0.1 2 33 146 175 146 236 0.76 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_15 - 229 AAA_33 PF13671.1 143 6.8e-05 14.2 0.0 1 1 1.7e-05 0.0002 12.7 0.0 9 87 11 97 9 101 0.74 # 8562 # 9248 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_1 - 129 AAA_33 PF13671.1 143 0.0001 13.6 0.1 1 1 1.7e-05 0.0002 12.7 0.1 5 25 4 24 1 33 0.88 # 3 # 389 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.323 1_23 - 315 AAA_30 PF13604.1 196 5e-06 17.6 0.0 1 1 2.3e-07 8.1e-06 16.9 0.0 2 44 128 169 127 233 0.88 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_23 - 315 FtsK_SpoIIIE PF01580.13 205 1.4e-08 25.9 0.0 1 1 1.2e-09 2.1e-08 25.2 0.0 37 77 142 181 118 214 0.77 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_26 - 820 FtsK_SpoIIIE PF01580.13 205 3e-05 15.0 0.0 1 1 3.8e-06 6.6e-05 13.8 0.0 38 64 452 480 425 498 0.77 # 16171 # 18630 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.320 1_1 - 129 ABC_tran PF00005.22 137 5.5e-06 18.2 0.0 1 1 7.1e-07 8.3e-06 17.6 0.0 15 51 2 39 1 76 0.70 # 3 # 389 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.323 1_26 - 820 ABC_tran PF00005.22 137 5.9e-06 18.1 0.9 1 1 4.9e-06 5.7e-05 14.9 0.0 12 42 455 486 446 601 0.69 # 16171 # 18630 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.320 1_23 - 315 ABC_tran PF00005.22 137 1.8e-05 16.5 0.1 1 1 2.5e-06 2.9e-05 15.8 0.1 8 45 140 180 134 262 0.77 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_23 - 315 AAA_19 PF13245.1 76 1.2e-05 16.5 0.1 1 1 2e-06 2.3e-05 15.6 0.1 9 48 143 179 134 210 0.79 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_1 - 129 AAA_19 PF13245.1 76 1.2e-05 16.5 0.0 1 1 1.6e-06 1.9e-05 15.9 0.0 17 37 5 25 3 42 0.84 # 3 # 389 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.323 1_15 - 229 AAA_19 PF13245.1 76 1.3e-05 16.3 0.0 1 1 2.6e-06 3e-05 15.2 0.0 20 47 11 34 4 48 0.84 # 8562 # 9248 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_26 - 820 AAA_10 PF12846.2 304 2e-36 117.3 0.1 1 1 2e-36 1.1e-35 114.8 0.0 2 286 455 713 454 717 0.90 # 16171 # 18630 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.320 1_8 - 533 AAA_10 PF12846.2 304 2.8e-08 24.9 0.0 1 1 8.4e-09 4.9e-08 24.1 0.0 3 302 76 434 74 436 0.71 # 4217 # 5815 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.322 1_23 - 315 AAA_10 PF12846.2 304 4e-07 21.1 0.0 1 1 1.1e-07 6.4e-07 20.4 0.0 2 37 144 182 143 211 0.88 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_15 - 229 AAA_10 PF12846.2 304 2.1e-05 15.4 0.1 1 1 1.2e-05 6.8e-05 13.8 0.1 11 140 11 167 9 226 0.57 # 8562 # 9248 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_1 - 129 AAA_10 PF12846.2 304 7.5e-05 13.6 0.0 1 1 1.4e-05 8e-05 13.5 0.0 6 24 3 21 1 64 0.92 # 3 # 389 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.323 1_9 - 236 AAA_10 PF12846.2 304 0.00013 12.8 0.2 1 1 7.8e-05 0.00046 11.1 0.1 3 44 5 46 3 72 0.81 # 5827 # 6534 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_23 - 315 ResIII PF04851.10 184 1.9e-06 19.2 0.0 1 1 9.8e-08 3.4e-06 18.4 0.0 3 62 118 185 116 205 0.80 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_26 - 820 Zot PF05707.7 193 3.3e-05 14.8 0.0 1 2 0.079 2.8 -1.2 0.0 50 76 269 296 236 303 0.72 # 16171 # 18630 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.320 1_26 - 820 Zot PF05707.7 193 3.3e-05 14.8 0.0 2 2 7.6e-06 0.00027 11.9 0.0 79 127 647 691 593 695 0.69 # 16171 # 18630 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.320 1_1 - 129 DUF2075 PF09848.4 352 4.8e-06 17.1 0.0 1 1 1.7e-07 6e-06 16.8 0.0 6 44 3 55 1 76 0.67 # 3 # 389 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.323 1_23 - 315 DEAD PF00270.24 169 4.5e-07 20.9 0.1 1 1 3.4e-08 1.2e-06 19.5 0.0 3 60 131 189 129 233 0.80 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_8 - 533 TrwB_AAD_bind PF10412.4 386 3.4e-25 79.8 0.0 1 1 6.2e-26 1.1e-24 78.1 0.0 122 368 219 478 65 482 0.87 # 4217 # 5815 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.322 1_23 - 315 TrwB_AAD_bind PF10412.4 386 2.3e-06 17.8 0.1 1 1 2.1e-07 3.7e-06 17.1 0.1 15 53 143 183 137 225 0.86 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_8 - 533 T4SS-DNA_transf PF02534.9 469 1.4e-98 321.8 0.1 1 1 5.4e-100 1.9e-98 321.4 0.1 6 459 30 522 25 531 0.85 # 4217 # 5815 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.322 1_23 - 315 Pox_A32 PF04665.7 241 0.00012 12.9 0.8 1 2 1.5e-05 0.00051 10.8 0.1 15 37 145 167 137 171 0.86 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_23 - 315 Pox_A32 PF04665.7 241 0.00012 12.9 0.8 2 2 0.015 0.51 0.9 0.0 186 220 168 204 161 213 0.75 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_1 - 129 RNA_helicase PF00910.17 107 0.00011 13.9 0.0 1 1 9.1e-06 0.00016 13.3 0.0 3 26 3 26 1 63 0.77 # 3 # 389 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.323 1_23 - 315 RNA_helicase PF00910.17 107 0.0002 13.0 0.0 1 1 3.5e-05 0.00061 11.4 0.0 1 23 146 168 146 195 0.81 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_23 - 315 UPF0079 PF02367.12 123 0.0002 12.4 0.1 1 1 1.4e-05 0.0005 11.2 0.0 17 40 145 168 130 177 0.83 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_15 - 229 AAA_24 PF13479.1 213 1.4e-05 16.2 0.1 1 1 8.4e-07 2.9e-05 15.1 0.1 11 79 9 90 2 103 0.69 # 8562 # 9248 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_23 - 315 UvrD-helicase PF00580.16 315 7.9e-05 13.4 0.0 1 1 3.6e-06 0.00013 12.7 0.0 2 28 129 158 128 179 0.84 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_23 - 315 NACHT PF05729.7 166 3.9e-05 14.8 0.0 1 1 6.6e-06 0.00011 13.2 0.0 3 31 146 174 144 208 0.81 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_1 - 129 NACHT PF05729.7 166 8.3e-05 13.7 0.0 1 1 7.7e-06 0.00013 13.0 0.0 5 31 3 29 1 41 0.86 # 3 # 389 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.323 1_15 - 229 AAA_25 PF13481.1 194 1.1e-06 19.5 0.2 1 3 4.8e-06 5.6e-05 14.0 0.0 42 66 10 36 3 47 0.77 # 8562 # 9248 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_15 - 229 AAA_25 PF13481.1 194 1.1e-06 19.5 0.2 2 3 0.083 0.97 0.2 0.0 101 150 42 87 33 90 0.69 # 8562 # 9248 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_15 - 229 AAA_25 PF13481.1 194 1.1e-06 19.5 0.2 3 3 0.02 0.23 2.2 0.0 90 177 136 223 127 225 0.67 # 8562 # 9248 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_26 - 820 AAA_25 PF13481.1 194 7.6e-06 16.8 0.1 1 1 3.9e-06 4.5e-05 14.3 0.0 33 58 455 479 428 539 0.79 # 16171 # 18630 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.320 1_23 - 315 AAA_25 PF13481.1 194 3.9e-05 14.5 0.0 1 1 5.2e-06 6.1e-05 13.9 0.0 21 58 131 168 110 230 0.79 # 14622 # 15566 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.334 1_1 - 129 AAA_28 PF13521.1 163 5.7e-07 21.0 0.0 1 1 1.6e-08 5.7e-07 21.0 0.0 3 46 2 48 1 103 0.79 # 3 # 389 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.323 1_15 - 229 APS_kinase PF01583.15 157 4.4e-05 14.6 0.0 1 1 3.8e-06 0.00013 13.0 0.0 11 42 10 41 3 53 0.90 # 8562 # 9248 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/0c6efaef-5149-4bcc-8743-6a3695ac1fed # Target file: checkm_output/bins/pGCA_000759485.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000759485.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/0c6efaef-5149-4bcc-8743-6a3695ac1fed checkm_output/bins/pGCA_000759485.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:42:09 2020 # [ok]