# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_28 - 192 RuvB_C PF05491.8 76 0.00022 12.2 0.4 1 2 0.038 1.2 0.2 0.1 55 67 121 133 117 139 0.82 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_28 - 192 RuvB_C PF05491.8 76 0.00022 12.2 0.4 2 2 8e-05 0.0025 8.8 0.0 6 43 145 178 142 182 0.86 # 22079 # 22654 # -1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.314 1_15 - 186 FeoB_N PF02421.13 156 4.6e-05 14.0 3.7 1 3 3.7e-05 0.0011 9.5 0.0 3 24 7 28 5 34 0.89 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 FeoB_N PF02421.13 156 4.6e-05 14.0 3.7 2 3 0.094 2.9 -1.6 0.0 115 131 90 106 61 117 0.53 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 FeoB_N PF02421.13 156 4.6e-05 14.0 3.7 3 3 0.0011 0.036 4.6 0.9 85 131 138 184 106 185 0.76 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 AAA_22 PF13401.1 131 4.9e-07 21.2 1.2 1 1 4.7e-08 1.4e-06 19.7 1.2 3 130 3 173 1 174 0.76 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 AAA_15 PF13175.1 415 2e-08 24.8 5.3 1 2 1.5e-05 0.00047 10.5 3.7 27 100 9 69 5 103 0.58 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 AAA_15 PF13175.1 415 2e-08 24.8 5.3 2 2 8.9e-07 2.7e-05 14.5 2.3 291 414 64 170 39 171 0.67 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 AAA_17 PF13207.1 121 8.2e-06 17.9 0.3 1 1 1.6e-06 2.4e-05 16.4 0.3 3 51 8 58 7 184 0.74 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_5 - 225 AAA_17 PF13207.1 121 7.1e-05 14.9 0.7 1 1 7.4e-06 0.00012 14.2 0.7 23 112 24 121 19 171 0.81 # 4246 # 4920 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 1_15 - 186 AAA_21 PF13304.1 303 1.3e-16 52.6 5.2 1 2 4.4e-09 1.4e-07 23.0 1.9 3 95 8 98 6 104 0.87 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 AAA_21 PF13304.1 303 1.3e-16 52.6 5.2 2 2 9.6e-13 3e-11 35.0 2.4 164 301 52 170 34 172 0.67 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 Zeta_toxin PF06414.7 201 6.4e-05 13.3 0.0 1 1 3.1e-06 9.5e-05 12.8 0.0 17 61 5 50 2 71 0.82 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 SMC_N PF02463.14 220 7.3e-08 23.1 4.2 1 1 9.4e-09 2.9e-07 21.1 4.2 27 213 7 182 2 185 0.75 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 AAA_16 PF13191.1 185 7.3e-05 14.0 0.7 1 1 3.8e-06 0.00012 13.4 0.7 24 42 4 22 2 179 0.88 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 AAA_23 PF13476.1 202 0.00065 11.3 7.2 1 1 0.00014 0.0044 8.6 7.2 23 131 8 115 3 177 0.54 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 AAA_18 PF13238.1 129 0.00032 12.3 4.2 1 1 4.9e-05 0.0015 10.1 4.2 3 64 9 97 8 181 0.64 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 AAA_13 PF13166.1 712 7.3e-08 22.5 2.6 1 2 0.00013 0.0042 6.7 0.6 23 81 11 68 3 98 0.65 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 AAA_13 PF13166.1 712 7.3e-08 22.5 2.6 2 2 2.5e-07 7.6e-06 15.8 0.3 500 578 108 175 76 181 0.82 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 AAA_29 PF13555.1 62 7.7e-07 19.9 0.2 1 1 4.2e-08 1.3e-06 19.2 0.2 22 40 3 21 1 25 0.89 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 MMR_HSR1 PF01926.18 116 8.9e-06 17.0 2.4 1 1 9.6e-07 3e-05 15.3 2.4 3 30 8 33 6 182 0.52 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 DUF258 PF03193.11 161 5.1e-08 23.5 0.0 1 1 2.7e-09 8.3e-08 22.8 0.0 35 67 4 36 1 50 0.87 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 NTPase_1 PF03266.10 168 5.8e-05 14.1 0.5 1 2 0.001 0.031 5.2 0.0 3 19 8 24 6 35 0.85 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 NTPase_1 PF03266.10 168 5.8e-05 14.1 0.5 2 2 0.00022 0.0069 7.3 0.2 73 136 104 169 81 184 0.74 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 Dynamin_N PF00350.18 168 5.9e-05 14.2 2.2 1 1 5.5e-06 0.00017 12.7 2.2 2 28 8 34 8 173 0.76 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 ABC_tran PF00005.22 137 2.6e-35 113.0 0.2 1 1 1.2e-36 3.6e-35 112.5 0.2 9 136 2 136 1 137 0.93 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 AAA_10 PF12846.2 304 4.1e-05 14.3 0.2 1 1 2.3e-06 7.1e-05 13.5 0.1 3 22 6 25 4 50 0.84 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 1_15 - 186 SbcCD_C PF13558.1 90 5.1e-06 17.7 0.0 1 1 2.4e-06 7.5e-05 13.9 0.0 11 88 87 151 80 153 0.81 # 10979 # 11536 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.303 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/5353c43c-b8cb-411b-a34b-92e3231c129c # Target file: checkm_output/bins/pGCA_000756205.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000756205.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/5353c43c-b8cb-411b-a34b-92e3231c129c checkm_output/bins/pGCA_000756205.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:42:07 2020 # [ok]