# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 5_6 - 155 ThiI PF02568.9 197 0.00085 11.9 1.1 1 1 1.2e-05 0.0014 11.3 1.1 39 106 8 75 4 81 0.89 # 3480 # 3944 # -1 # ID=5_6;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.230 2_13 - 276 MipZ PF09140.6 261 9.2e-09 27.8 1.3 1 2 2.1e-06 0.00025 13.3 0.0 2 38 10 47 9 55 0.85 # 9521 # 10348 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.285 2_13 - 276 MipZ PF09140.6 261 9.2e-09 27.8 1.3 2 2 2.3e-06 0.00027 13.2 0.0 61 131 90 161 77 186 0.77 # 9521 # 10348 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.285 2_13 - 276 YhjQ PF06564.7 244 2.5e-05 16.8 0.0 1 1 4.5e-07 5.4e-05 15.8 0.0 6 190 13 203 9 230 0.63 # 9521 # 10348 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.285 1_50 - 139 DUF87 PF01935.12 229 0.00016 14.7 2.8 1 1 1.5e-06 0.00017 14.6 2.8 85 186 6 102 1 135 0.83 # 53273 # 53689 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_46 - 288 NB-ARC PF00931.17 287 8.4e-06 17.9 0.1 1 1 2.6e-07 1.6e-05 17.0 0.1 6 39 13 46 8 80 0.87 # 48883 # 49746 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255 1_25 - 230 NB-ARC PF00931.17 287 2e-05 16.7 0.7 1 2 8.2e-07 4.9e-05 15.4 0.0 11 51 21 62 10 69 0.77 # 25481 # 26170 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_25 - 230 NB-ARC PF00931.17 287 2e-05 16.7 0.7 2 2 0.088 5.2 -1.1 0.1 70 185 181 221 164 227 0.45 # 25481 # 26170 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_46 - 288 AAA_22 PF13401.1 131 3.7e-06 20.3 1.1 1 1 1.8e-07 1e-05 18.8 0.4 4 123 26 176 23 183 0.70 # 48883 # 49746 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255 1_3 - 210 AAA_22 PF13401.1 131 0.00017 14.9 0.4 1 1 1.1e-05 0.00067 13.0 0.4 3 37 26 75 23 197 0.58 # 5206 # 5835 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.275 2_13 - 276 ATP_bind_1 PF03029.12 238 0.00085 12.0 1.7 1 1 2e-05 0.0024 10.5 0.3 6 34 19 46 17 146 0.72 # 9521 # 10348 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.285 4_6 - 537 MutS_V PF00488.16 235 1.1e-35 116.2 0.1 1 1 2.5e-37 1.5e-35 115.8 0.1 1 229 315 532 315 536 0.93 # 2496 # 4106 # -1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.273 1_8 - 540 MutS_V PF00488.16 235 2.2e-35 115.3 0.2 1 1 5e-37 3e-35 114.8 0.2 1 230 318 536 318 539 0.92 # 10372 # 11991 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.276 1_49 - 460 Stn1 PF10451.4 256 0.0063 8.5 2.7 1 2 0.00038 0.045 5.7 0.0 110 152 45 88 35 91 0.87 # 51859 # 53238 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.304 1_49 - 460 Stn1 PF10451.4 256 0.0063 8.5 2.7 2 2 0.0043 0.51 2.2 0.8 59 94 166 199 162 223 0.73 # 51859 # 53238 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.304 1_46 - 288 AAA_15 PF13175.1 415 1.4e-06 20.7 9.9 1 3 1.3e-07 7.6e-06 18.3 6.4 16 73 14 73 1 74 0.77 # 48883 # 49746 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255 1_46 - 288 AAA_15 PF13175.1 415 1.4e-06 20.7 9.9 2 3 0.0046 0.27 3.3 2.2 229 286 72 121 67 138 0.77 # 48883 # 49746 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255 1_46 - 288 AAA_15 PF13175.1 415 1.4e-06 20.7 9.9 3 3 1.8e-05 0.001 11.2 0.1 373 410 141 178 129 180 0.92 # 48883 # 49746 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255 1_3 - 210 AAA_15 PF13175.1 415 6.7e-06 18.4 11.8 1 2 1.2e-05 0.00071 11.8 7.3 11 73 10 86 2 132 0.60 # 5206 # 5835 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.275 1_3 - 210 AAA_15 PF13175.1 415 6.7e-06 18.4 11.8 2 2 6.5e-05 0.0039 9.4 0.1 366 412 150 192 141 195 0.83 # 5206 # 5835 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.275 7_3 - 225 AAA_17 PF13207.1 121 5.1e-06 20.5 0.9 1 1 4.2e-07 8.4e-06 19.8 0.9 23 113 24 122 21 206 0.85 # 2027 # 2701 # 1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.341 9_1 - 221 AAA_17 PF13207.1 121 1.1e-05 19.4 1.4 1 1 8.1e-07 1.6e-05 18.9 1.4 23 113 20 118 16 202 0.85 # 59 # 721 # -1 # ID=9_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.344 4_6 - 537 AAA_17 PF13207.1 121 1.4e-05 19.1 0.1 1 1 2.6e-06 5.1e-05 17.3 0.1 2 35 351 392 350 519 0.61 # 2496 # 4106 # -1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.273 1_8 - 540 AAA_17 PF13207.1 121 1.5e-05 19.0 0.0 1 1 2.1e-06 4.1e-05 17.6 0.0 2 35 354 395 353 519 0.58 # 10372 # 11991 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.276 1_25 - 230 AAA_17 PF13207.1 121 0.00029 14.8 0.1 1 1 4.3e-05 0.00086 13.3 0.1 1 64 31 110 31 228 0.70 # 25481 # 26170 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 2_13 - 276 AAA_17 PF13207.1 121 0.00032 14.7 0.5 1 1 5e-05 0.001 13.1 0.5 9 62 19 86 18 266 0.79 # 9521 # 10348 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.285 1_25 - 230 AAA_21 PF13304.1 303 3.2e-21 69.6 1.8 1 2 6.2e-09 2.5e-07 24.0 0.1 3 43 33 71 31 85 0.68 # 25481 # 26170 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_25 - 230 AAA_21 PF13304.1 303 3.2e-21 69.6 1.8 2 2 2.9e-15 1.2e-13 44.8 0.1 179 297 107 180 76 187 0.74 # 25481 # 26170 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_3 - 210 AAA_21 PF13304.1 303 6.4e-15 49.0 1.5 1 1 6.1e-15 2.4e-13 43.8 1.5 1 301 29 194 29 196 0.86 # 5206 # 5835 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.275 1_46 - 288 AAA_21 PF13304.1 303 3.5e-13 43.2 15.9 1 2 4.4e-07 1.7e-05 18.0 1.8 3 49 30 58 28 77 0.68 # 48883 # 49746 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255 1_46 - 288 AAA_21 PF13304.1 303 3.5e-13 43.2 15.9 2 2 4.8e-12 1.9e-10 34.3 0.7 153 297 79 178 51 181 0.70 # 48883 # 49746 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255 4_6 - 537 T2SE PF00437.15 272 7.8e-06 18.1 0.0 1 1 3e-07 1.2e-05 17.4 0.0 105 153 325 373 310 419 0.81 # 2496 # 4106 # -1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.273 1_8 - 540 T2SE PF00437.15 272 2.1e-05 16.7 0.0 1 1 7.9e-07 3.1e-05 16.1 0.0 112 162 335 384 303 423 0.77 # 10372 # 11991 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.276 1_3 - 210 T2SE PF00437.15 272 0.0001 14.4 0.1 1 1 4.1e-06 0.00016 13.7 0.1 116 148 15 47 3 62 0.79 # 5206 # 5835 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.275 1_25 - 230 Zeta_toxin PF06414.7 201 1.3e-05 17.5 0.0 1 1 1.6e-07 1.9e-05 17.0 0.0 17 52 30 67 16 117 0.89 # 25481 # 26170 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_25 - 230 SMC_N PF02463.14 220 7.9e-07 21.6 0.9 1 2 1.6e-05 0.00062 12.2 0.2 24 51 29 53 14 80 0.79 # 25481 # 26170 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_25 - 230 SMC_N PF02463.14 220 7.9e-07 21.6 0.9 2 2 0.00022 0.0088 8.4 0.0 151 198 133 181 85 201 0.83 # 25481 # 26170 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_3 - 210 SMC_N PF02463.14 220 4.1e-06 19.3 2.7 1 1 3.5e-07 1.4e-05 17.5 2.7 16 211 18 204 3 209 0.72 # 5206 # 5835 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.275 1_8 - 540 SMC_N PF02463.14 220 0.0033 9.8 1.5 1 1 0.00026 0.01 8.2 0.3 27 48 354 375 343 432 0.83 # 10372 # 11991 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.276 2_13 - 276 VirC1 PF07015.6 231 8.3e-06 18.1 0.0 1 2 7.1e-05 0.0085 8.3 0.0 3 39 10 47 8 54 0.83 # 9521 # 10348 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.285 2_13 - 276 VirC1 PF07015.6 231 8.3e-06 18.1 0.0 2 2 9.2e-05 0.011 7.9 0.0 79 112 124 157 117 229 0.85 # 9521 # 10348 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.285 2_13 - 276 Fer4_NifH PF00142.13 273 7.2e-05 15.2 1.2 1 2 4.4e-06 0.00052 12.4 0.1 8 37 17 47 11 58 0.88 # 9521 # 10348 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.285 2_13 - 276 Fer4_NifH PF00142.13 273 7.2e-05 15.2 1.2 2 2 0.0099 1.2 1.4 0.2 183 233 201 251 183 272 0.72 # 9521 # 10348 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.285 1_25 - 230 Arch_ATPase PF01637.13 234 0.00011 15.0 0.3 1 1 5.6e-06 0.00033 13.5 0.0 17 100 28 114 17 150 0.63 # 25481 # 26170 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_3 - 210 Arch_ATPase PF01637.13 234 0.00016 14.5 2.4 1 1 8.5e-06 0.00051 12.9 2.4 9 120 18 185 16 191 0.64 # 5206 # 5835 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.275 1_25 - 230 AAA_16 PF13191.1 185 0.00054 13.1 0.0 1 1 1e-05 0.0006 13.0 0.0 20 67 25 74 16 225 0.89 # 25481 # 26170 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 4_6 - 537 AAA_16 PF13191.1 185 0.0015 11.7 0.0 1 1 4.5e-05 0.0027 10.9 0.0 16 51 337 375 330 422 0.78 # 2496 # 4106 # -1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.273 1_25 - 230 AAA_23 PF13476.1 202 6.1e-05 16.5 8.7 1 1 7.4e-06 0.00018 15.0 8.7 11 190 20 217 12 229 0.38 # 25481 # 26170 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 4_6 - 537 AAA_23 PF13476.1 202 8.9e-05 16.0 1.6 1 1 3.8e-06 8.9e-05 16.0 1.6 11 54 323 399 319 529 0.53 # 2496 # 4106 # -1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.273 1_3 - 210 AAA_23 PF13476.1 202 0.00061 13.3 1.2 1 1 2.5e-05 0.00061 13.3 1.2 3 38 3 46 2 50 0.79 # 5206 # 5835 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.275 1_46 - 288 AAA_23 PF13476.1 202 0.0014 12.1 19.7 1 1 0.00082 0.02 8.4 19.7 12 175 18 267 2 285 0.53 # 48883 # 49746 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255 1_8 - 540 AAA_23 PF13476.1 202 0.0067 9.9 11.0 1 1 2.9e-05 0.00068 13.1 5.5 19 88 351 469 325 531 0.49 # 10372 # 11991 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.276 4_6 - 537 AAA_18 PF13238.1 129 3e-05 17.5 0.4 1 1 4.4e-06 0.0001 15.8 0.0 1 68 351 437 351 496 0.71 # 2496 # 4106 # -1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.273 1_8 - 540 AAA_18 PF13238.1 129 4.5e-05 16.9 0.2 1 1 6.8e-06 0.00016 15.1 0.0 1 65 354 437 354 502 0.77 # 10372 # 11991 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.276 1_3 - 210 AAA_18 PF13238.1 129 4.8e-05 16.9 1.2 1 2 5.4e-05 0.0013 12.2 0.4 1 68 30 94 30 143 0.71 # 5206 # 5835 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.275 1_3 - 210 AAA_18 PF13238.1 129 4.8e-05 16.9 1.2 2 2 0.022 0.52 3.8 0.0 43 88 155 197 123 206 0.76 # 5206 # 5835 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.275 2_13 - 276 AAA_18 PF13238.1 129 5.8e-05 16.6 4.8 1 1 4.1e-06 9.8e-05 15.8 1.1 8 89 19 145 18 157 0.83 # 9521 # 10348 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.285 1_46 - 288 AAA_18 PF13238.1 129 0.0072 9.8 5.9 1 1 0.00014 0.0033 10.9 1.9 1 68 29 100 29 194 0.77 # 48883 # 49746 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255 2_13 - 276 CbiA PF01656.18 195 1.7e-21 69.7 0.1 1 1 2.2e-23 2.7e-21 69.0 0.1 1 148 11 186 11 225 0.77 # 9521 # 10348 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.285 4_6 - 537 AAA_14 PF13173.1 128 5.1e-07 22.8 0.1 1 1 3.4e-08 1.4e-06 21.4 0.1 3 98 349 470 347 492 0.66 # 2496 # 4106 # -1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.273 1_8 - 540 AAA_14 PF13173.1 128 9.1e-07 22.0 0.2 1 1 7.2e-08 2.8e-06 20.4 0.1 3 94 352 469 350 491 0.62 # 10372 # 11991 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.276 1_46 - 288 AAA_14 PF13173.1 128 0.0031 10.6 9.5 1 1 0.0009 0.036 7.2 4.4 4 95 28 176 25 187 0.57 # 48883 # 49746 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255 2_12 - 57 HI0933_like PF03486.9 409 0.00078 11.1 0.0 1 1 6.7e-06 0.0008 11.0 0.0 55 99 10 54 3 56 0.89 # 9358 # 9528 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.298 1_8 - 540 AAA_29 PF13555.1 62 1.7e-07 23.9 0.2 1 1 1.7e-08 4.1e-07 22.6 0.2 22 49 351 377 343 387 0.80 # 10372 # 11991 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.276 4_6 - 537 AAA_29 PF13555.1 62 3.3e-07 23.0 0.3 1 1 3.4e-08 8.1e-07 21.7 0.3 22 48 348 373 339 384 0.79 # 2496 # 4106 # -1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.273 1_3 - 210 AAA_29 PF13555.1 62 3.4e-05 16.5 0.1 1 1 2.4e-06 5.8e-05 15.8 0.1 18 41 23 45 15 67 0.69 # 5206 # 5835 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.275 1_46 - 288 AAA_29 PF13555.1 62 0.00027 13.6 0.2 1 1 2.3e-05 0.00055 12.6 0.2 17 40 21 43 14 56 0.84 # 48883 # 49746 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255 1_25 - 230 AAA_29 PF13555.1 62 0.00047 12.9 0.1 1 1 3.7e-05 0.00087 12.0 0.1 16 40 23 46 13 53 0.83 # 25481 # 26170 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 4_6 - 537 AAA PF00004.24 132 1.3e-06 21.8 0.0 1 1 7.7e-08 3.1e-06 20.6 0.0 1 113 351 472 351 477 0.76 # 2496 # 4106 # -1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.273 1_8 - 540 AAA PF00004.24 132 2.1e-06 21.2 0.1 1 1 1.2e-07 4.9e-06 20.0 0.1 1 113 354 475 354 486 0.77 # 10372 # 11991 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.276 1_25 - 230 AAA PF00004.24 132 0.0016 11.8 2.3 1 1 0.00051 0.02 8.2 2.3 3 23 34 54 32 229 0.86 # 25481 # 26170 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 2_2 - 334 Strep_67kDa_ant PF06100.6 500 7e-174 571.9 0.3 1 1 1.3e-175 7.9e-174 571.7 0.3 27 358 1 332 1 333 1.00 # 576 # 1577 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.332 2_1 - 148 Strep_67kDa_ant PF06100.6 500 2.8e-74 243.3 0.8 1 1 5.2e-76 3.1e-74 243.2 0.8 374 500 2 128 1 128 0.99 # 97 # 540 # -1 # ID=2_1;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.363 1_25 - 230 MMR_HSR1 PF01926.18 116 0.0004 13.5 0.5 1 1 7.4e-06 0.00088 12.4 0.5 2 58 32 82 31 227 0.75 # 25481 # 26170 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_48 - 336 tRNA-synt_1b PF00579.20 292 1.3e-70 231.0 0.9 1 1 1.3e-72 1.5e-70 230.7 0.9 7 291 5 287 1 288 0.97 # 50703 # 51710 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.301 1_3 - 210 DUF258 PF03193.11 161 1.5e-06 20.7 0.2 1 1 8.5e-08 3.4e-06 19.5 0.1 25 57 16 49 2 80 0.79 # 5206 # 5835 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.275 1_25 - 230 DUF258 PF03193.11 161 5.2e-06 18.9 0.2 1 1 2.9e-07 1.2e-05 17.7 0.2 16 68 9 62 2 97 0.84 # 25481 # 26170 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_46 - 288 DUF258 PF03193.11 161 1.3e-05 17.6 0.3 1 1 6e-07 2.4e-05 16.7 0.3 17 66 7 57 1 67 0.82 # 48883 # 49746 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255 2_13 - 276 AAA_31 PF13614.1 157 1.1e-06 21.9 0.3 1 1 1.1e-07 1.3e-05 18.3 0.3 8 144 16 154 9 166 0.72 # 9521 # 10348 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.285 4_6 - 537 AAA_33 PF13671.1 143 0.00015 14.9 0.0 1 1 6.3e-06 0.00037 13.5 0.0 2 39 351 399 351 451 0.61 # 2496 # 4106 # -1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.273 1_8 - 540 AAA_33 PF13671.1 143 0.00028 13.9 0.0 1 1 1.3e-05 0.00078 12.5 0.0 2 33 354 396 354 464 0.69 # 10372 # 11991 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.276 1_3 - 210 AAA_30 PF13604.1 196 0.00064 12.5 0.0 1 2 2.8e-05 0.0033 10.1 0.0 13 38 22 47 19 73 0.85 # 5206 # 5835 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.275 1_3 - 210 AAA_30 PF13604.1 196 0.00064 12.5 0.0 2 2 0.036 4.3 -0.0 0.0 90 117 142 175 113 193 0.68 # 5206 # 5835 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.275 1_8 - 540 FtsK_SpoIIIE PF01580.13 205 7.9e-05 15.3 0.0 1 1 3.4e-06 0.00013 14.6 0.0 39 71 347 384 320 385 0.77 # 10372 # 11991 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.276 4_6 - 537 FtsK_SpoIIIE PF01580.13 205 9.1e-05 15.1 0.0 1 1 3.8e-06 0.00015 14.4 0.0 28 69 338 379 313 382 0.79 # 2496 # 4106 # -1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.273 1_3 - 210 FtsK_SpoIIIE PF01580.13 205 0.00033 13.3 0.0 1 1 1.3e-05 0.00052 12.7 0.0 21 58 9 47 3 56 0.90 # 5206 # 5835 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.275 1_8 - 540 Dynamin_N PF00350.18 168 2.1e-05 17.5 0.0 1 1 5.9e-07 3.5e-05 16.8 0.0 1 45 354 398 354 492 0.82 # 10372 # 11991 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.276 4_6 - 537 Dynamin_N PF00350.18 168 0.00011 15.2 0.0 1 1 3e-06 0.00018 14.5 0.0 1 45 351 395 351 510 0.82 # 2496 # 4106 # -1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.273 1_3 - 210 ABC_tran PF00005.22 137 4.6e-34 110.8 0.3 1 1 2.4e-35 5.7e-34 110.5 0.3 1 136 17 160 17 161 0.95 # 5206 # 5835 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.275 1_25 - 230 ABC_tran PF00005.22 137 3.9e-28 91.6 0.4 1 1 2.6e-29 6.1e-28 91.0 0.0 1 137 19 151 19 151 0.93 # 25481 # 26170 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_46 - 288 ABC_tran PF00005.22 137 5.8e-26 84.6 0.2 1 1 4.9e-27 1.2e-25 83.6 0.0 2 137 17 148 16 148 0.90 # 48883 # 49746 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255 1_8 - 540 ABC_tran PF00005.22 137 0.00013 15.4 0.0 1 1 1e-05 0.00024 14.6 0.0 7 37 347 377 342 484 0.87 # 10372 # 11991 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.276 4_6 - 537 ABC_tran PF00005.22 137 0.00017 15.1 0.0 1 1 1.4e-05 0.00032 14.2 0.0 3 36 340 373 338 464 0.91 # 2496 # 4106 # -1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.273 1_8 - 540 AAA_10 PF12846.2 304 8.3e-05 15.2 0.0 1 1 2.7e-06 0.00016 14.3 0.0 1 30 351 386 351 487 0.85 # 10372 # 11991 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.276 4_6 - 537 AAA_10 PF12846.2 304 0.00035 13.2 0.0 1 1 1.1e-05 0.00065 12.3 0.0 1 30 348 383 348 461 0.81 # 2496 # 4106 # -1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.273 1_3 - 210 SbcCD_C PF13558.1 90 6.2e-07 22.5 0.0 1 1 1.6e-07 9.8e-06 18.6 0.0 24 89 124 176 112 177 0.79 # 5206 # 5835 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.275 1_25 - 230 SbcCD_C PF13558.1 90 0.00054 13.1 0.0 1 1 2e-05 0.0012 12.0 0.0 62 87 139 164 114 167 0.84 # 25481 # 26170 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_8 - 540 PduV-EutP PF10662.4 143 0.0003 13.4 0.0 1 1 8.5e-06 0.00051 12.7 0.0 2 49 352 398 351 470 0.82 # 10372 # 11991 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.276 4_6 - 537 PduV-EutP PF10662.4 143 0.00062 12.4 0.0 1 1 1.9e-05 0.0011 11.6 0.0 2 49 349 395 348 438 0.82 # 2496 # 4106 # -1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.273 4_6 - 537 DUF815 PF05673.8 250 0.00016 13.7 0.0 1 1 4.8e-06 0.00029 13.0 0.0 52 77 347 372 319 385 0.81 # 2496 # 4106 # -1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.273 1_8 - 540 DUF815 PF05673.8 250 0.00036 12.6 0.0 1 1 1.1e-05 0.00068 11.7 0.0 53 77 351 375 330 386 0.87 # 10372 # 11991 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.276 1_25 - 230 ArgK PF03308.11 267 0.00052 11.9 0.0 1 1 1.3e-05 0.00078 11.4 0.0 13 48 13 48 4 63 0.84 # 25481 # 26170 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_46 - 288 ArgK PF03308.11 267 0.0011 10.9 0.0 1 1 2.7e-05 0.0016 10.3 0.0 14 53 11 50 2 58 0.79 # 48883 # 49746 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255 2_13 - 276 GTP_EFTU PF00009.22 188 0.00031 13.3 1.6 1 1 1.6e-05 0.0019 10.8 1.6 14 126 20 183 17 272 0.77 # 9521 # 10348 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.285 1_3 - 210 RNA_helicase PF00910.17 107 0.00011 15.6 0.1 1 2 5.7e-05 0.0022 11.3 0.0 1 18 30 47 30 85 0.75 # 5206 # 5835 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.275 1_3 - 210 RNA_helicase PF00910.17 107 0.00011 15.6 0.1 2 2 0.039 1.6 2.2 0.0 47 90 147 191 103 196 0.70 # 5206 # 5835 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.275 1_8 - 540 RNA_helicase PF00910.17 107 0.00021 14.6 0.4 1 1 6.4e-05 0.0025 11.1 0.0 1 33 354 395 354 412 0.66 # 10372 # 11991 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.276 4_6 - 537 RNA_helicase PF00910.17 107 0.00066 13.0 0.2 1 1 0.00016 0.0065 9.8 0.0 1 34 351 393 351 410 0.65 # 2496 # 4106 # -1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.273 1_25 - 230 UPF0079 PF02367.12 123 4.9e-05 16.1 0.0 1 1 3.1e-06 0.00012 14.9 0.0 9 42 23 56 16 63 0.79 # 25481 # 26170 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_8 - 540 UPF0079 PF02367.12 123 0.00023 14.0 0.0 1 1 1.2e-05 0.00047 12.9 0.0 8 46 344 382 339 436 0.76 # 10372 # 11991 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.276 4_6 - 537 UPF0079 PF02367.12 123 0.00031 13.5 0.0 1 1 1.6e-05 0.00064 12.5 0.0 7 48 340 384 336 433 0.73 # 2496 # 4106 # -1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.273 1_3 - 210 NACHT PF05729.7 166 0.00025 13.9 0.1 1 1 5.3e-06 0.00063 12.6 0.1 3 18 30 45 28 56 0.89 # 5206 # 5835 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.275 1_8 - 540 AAA_25 PF13481.1 194 0.0013 11.3 0.0 1 1 1.7e-05 0.002 10.7 0.0 31 65 349 383 324 398 0.78 # 10372 # 11991 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.276 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/d3a26bab-956e-4fa9-80f3-6de1d2259cc1 # Target file: checkm_output/bins/pGCA_000751035.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000751035.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d3a26bab-956e-4fa9-80f3-6de1d2259cc1 checkm_output/bins/pGCA_000751035.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:42:09 2020 # [ok]