# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_2 - 272 cobW PF02492.14 178 0.0003 11.7 0.2 1 1 2e-05 0.0007 10.5 0.1 126 171 102 156 63 162 0.72 # 1749 # 2564 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.304 3_5 - 138 Usp PF00582.21 140 1.5e-25 81.4 0.6 1 1 9.8e-27 1.7e-25 81.3 0.6 1 140 1 137 1 137 0.97 # 3074 # 3487 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_3 - 138 Usp PF00582.21 140 1.8e-25 81.2 0.0 1 1 1.2e-26 2.1e-25 81.0 0.0 1 140 1 137 1 137 0.93 # 2517 # 2930 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 2_2 - 272 AAA_22 PF13401.1 131 3.9e-28 89.6 0.0 1 1 1.9e-29 6.8e-28 88.9 0.0 2 131 25 171 24 171 0.87 # 1749 # 2564 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.304 1_9 - 225 AAA_17 PF13207.1 121 4.4e-06 19.0 0.8 1 1 3.5e-07 6.2e-06 18.5 0.8 23 113 24 122 19 204 0.85 # 6296 # 6970 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.347 9_1 - 199 AAA_17 PF13207.1 121 0.00011 14.4 0.1 1 1 9.3e-06 0.00016 13.9 0.1 23 109 24 118 20 173 0.77 # 61 # 657 # 1 # ID=9_1;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.320 2_1 - 278 AAA_14 PF13173.1 128 0.016 6.6 11.5 1 2 0.051 1.8 -0.0 0.2 19 49 14 40 8 85 0.62 # 668 # 1501 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.242 2_1 - 278 AAA_14 PF13173.1 128 0.016 6.6 11.5 2 2 5.5e-06 0.00019 12.8 1.5 27 91 86 157 70 192 0.77 # 668 # 1501 # -1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.242 2_2 - 272 AAA PF00004.24 132 6.8e-06 17.8 1.0 1 1 6e-06 0.00021 12.9 1.0 3 110 32 166 31 189 0.65 # 1749 # 2564 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.304 1_3 - 138 SAM_MT PF04445.8 235 5.5e-06 17.1 0.1 1 1 3.8e-07 6.6e-06 16.8 0.1 9 110 34 135 29 137 0.83 # 2517 # 2930 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 3_5 - 138 SAM_MT PF04445.8 235 0.00014 12.4 0.2 1 1 9.4e-06 0.00016 12.2 0.2 8 110 33 135 28 137 0.85 # 3074 # 3487 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 2_2 - 272 DEAD PF00270.24 169 0.00044 11.2 1.7 1 1 4.1e-05 0.0014 9.5 1.7 111 144 120 152 29 235 0.86 # 1749 # 2564 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.304 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/6dddfbf2-4b0b-4712-97b5-3dcbd8832c89 # Target file: checkm_output/bins/pGCA_000746505.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000746505.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6dddfbf2-4b0b-4712-97b5-3dcbd8832c89 checkm_output/bins/pGCA_000746505.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:42:06 2020 # [ok]