# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 516 UPF0020 PF01170.13 180 1.2e-06 18.1 0.0 1 1 2e-07 2.4e-06 17.1 0.0 30 132 53 148 26 177 0.74 # 1 # 1548 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.421 1_1 - 516 RrnaAD PF00398.15 262 3.7e-05 12.7 0.0 1 1 4.7e-06 5.6e-05 12.1 0.0 50 109 77 133 23 150 0.83 # 1 # 1548 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.421 1_6 - 200 MipZ PF09140.6 261 3.4e-09 26.0 0.9 1 2 7.5e-08 9e-07 18.0 0.3 2 41 3 42 2 57 0.88 # 5202 # 5801 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.577 1_6 - 200 MipZ PF09140.6 261 3.4e-09 26.0 0.9 2 2 0.00031 0.0037 6.2 0.0 94 143 74 124 63 141 0.82 # 5202 # 5801 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.577 1_12 - 1137 UvrD_C_2 PF13538.1 104 2.5e-06 17.6 1.0 1 1 4.5e-07 5.5e-06 16.5 0.1 3 103 711 818 709 819 0.68 # 12655 # 16065 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.571 1_12 - 1137 AAA_22 PF13401.1 131 9.4e-07 19.0 0.0 1 1 3.4e-07 4e-06 16.9 0.0 8 125 465 577 459 582 0.81 # 12655 # 16065 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.571 1_1 - 516 Methyltransf_11 PF08241.7 95 2.7e-05 14.6 0.0 1 1 1.1e-05 0.00013 12.4 0.0 3 53 58 113 56 144 0.87 # 1 # 1548 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.421 1_6 - 200 Methyltransf_24 PF13578.1 106 1.4e-05 15.9 0.0 1 1 2.3e-06 2.8e-05 14.9 0.0 7 86 15 95 11 106 0.75 # 5202 # 5801 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.577 1_6 - 200 VirC1 PF07015.6 231 1.7e-16 49.9 0.3 1 1 3.5e-17 4.2e-16 48.6 0.3 1 124 1 119 1 127 0.84 # 5202 # 5801 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.577 1_12 - 1137 AAA_16 PF13191.1 185 0.068 3.0 14.7 1 2 2.8e-05 0.00033 10.6 0.9 18 71 455 517 448 706 0.79 # 12655 # 16065 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.571 1_12 - 1137 AAA_16 PF13191.1 185 0.068 3.0 14.7 2 2 0.1 1.2 -1.0 2.3 74 135 970 1052 942 1097 0.63 # 12655 # 16065 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.571 1_6 - 200 CbiA PF01656.18 195 7.3e-23 70.9 0.6 1 1 1.7e-23 2e-22 69.4 0.6 2 193 5 169 4 171 0.75 # 5202 # 5801 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.577 1_1 - 516 Methyltransf_25 PF13649.1 101 2.1e-05 14.8 0.0 1 1 3.3e-06 4e-05 13.9 0.0 3 88 57 144 55 153 0.73 # 1 # 1548 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.421 1_1 - 516 N6_Mtase PF02384.11 311 8e-10 28.1 0.0 1 1 1.4e-10 1.6e-09 27.1 0.0 20 214 22 215 15 247 0.72 # 1 # 1548 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.421 1_6 - 200 AAA_31 PF13614.1 157 9.4e-05 12.3 0.1 1 2 0.00014 0.0017 8.2 0.1 8 41 9 42 2 48 0.86 # 5202 # 5801 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.577 1_6 - 200 AAA_31 PF13614.1 157 9.4e-05 12.3 0.1 2 2 0.012 0.14 2.0 0.0 120 154 81 114 62 117 0.76 # 5202 # 5801 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.577 1_1 - 516 Methyltransf_26 PF13659.1 117 1.2e-18 57.2 0.0 1 1 1.7e-19 2.1e-18 56.4 0.0 4 113 55 183 53 187 0.90 # 1 # 1548 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.421 1_12 - 1137 AAA_30 PF13604.1 196 1.9e-57 183.9 6.4 1 1 1.6e-58 1.9e-57 183.9 6.4 2 185 445 636 444 647 0.93 # 12655 # 16065 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.571 1_1 - 516 Eco57I PF07669.6 106 3.3e-12 36.7 0.0 1 1 6.9e-13 8.3e-12 35.4 0.0 6 103 125 236 121 239 0.89 # 1 # 1548 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.421 1_12 - 1137 AAA_19 PF13245.1 76 3.5e-10 29.5 4.5 1 2 5.3e-10 6.3e-09 25.5 1.9 13 75 464 520 451 521 0.82 # 12655 # 16065 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.571 1_12 - 1137 AAA_19 PF13245.1 76 3.5e-10 29.5 4.5 2 2 0.0081 0.097 2.5 0.0 41 61 663 684 641 709 0.76 # 12655 # 16065 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.571 1_1 - 516 Methyltransf_31 PF13847.1 152 8.5e-05 12.1 0.0 1 1 2e-05 0.00024 10.6 0.0 4 84 52 135 49 180 0.75 # 1 # 1548 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.421 1_12 - 1137 AAA_11 PF13086.1 236 2.5e-08 23.7 10.2 1 3 0.001 0.012 5.0 0.0 3 75 446 511 444 534 0.85 # 12655 # 16065 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.571 1_12 - 1137 AAA_11 PF13086.1 236 2.5e-08 23.7 10.2 2 3 1.2e-08 1.5e-07 21.1 0.2 194 231 542 582 524 585 0.84 # 12655 # 16065 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.571 1_12 - 1137 AAA_11 PF13086.1 236 2.5e-08 23.7 10.2 3 3 0.042 0.5 -0.3 3.5 81 174 981 1070 902 1095 0.57 # 12655 # 16065 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.571 1_1 - 516 TIGR00755 TIGR00755 256 1.9e-07 20.1 0.0 1 1 2.5e-08 3e-07 19.5 0.0 49 105 77 132 23 148 0.83 # 1 # 1548 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.421 1_12 - 1137 PIF1 PF05970.9 364 1e-05 14.4 0.0 1 1 1.9e-06 2.2e-05 13.3 0.0 27 116 466 554 445 575 0.84 # 12655 # 16065 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.571 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/59f96198-8ed0-4516-8e6b-fa66d5d94ed6 # Target file: checkm_output/bins/pGCA_000742735.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000742735.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/59f96198-8ed0-4516-8e6b-fa66d5d94ed6 checkm_output/bins/pGCA_000742735.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:42:01 2020 # [ok]