# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_10 - 512 ATP_bind_3 PF01171.15 182 1.5e-05 17.3 0.0 1 1 4e-07 3.7e-05 16.1 0.0 1 155 217 373 217 381 0.66 # 9883 # 11418 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.296 1_10 - 417 Seryl_tRNA_N PF02403.17 108 0.061 6.2 13.4 1 3 0.033 3.1 0.7 0.5 43 71 53 81 25 93 0.65 # 9235 # 10485 # 1 # ID=1_10;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.320 1_10 - 417 Seryl_tRNA_N PF02403.17 108 0.061 6.2 13.4 2 3 0.011 0.98 2.3 0.5 48 101 168 216 160 225 0.73 # 9235 # 10485 # 1 # ID=1_10;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.320 1_10 - 417 Seryl_tRNA_N PF02403.17 108 0.061 6.2 13.4 3 3 4e-05 0.0038 10.1 0.6 33 77 341 384 330 412 0.81 # 9235 # 10485 # 1 # ID=1_10;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.320 1_43 - 451 Terminase_6 PF03237.10 384 7.8e-60 195.4 0.0 1 1 9.7e-62 9e-60 195.1 0.0 1 382 65 431 65 433 0.93 # 35449 # 36801 # -1 # ID=1_43;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_50 - 251 MipZ PF09140.6 261 1.4e-11 36.8 0.1 1 1 2.1e-11 9.8e-10 30.7 0.1 2 128 8 153 7 161 0.61 # 41265 # 42017 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.264 2_16 - 254 MipZ PF09140.6 261 4.1e-11 35.2 0.5 1 1 2.3e-11 1.1e-09 30.5 0.5 2 128 8 154 7 175 0.60 # 16669 # 17430 # -1 # ID=2_16;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 2_16 - 254 YhjQ PF06564.7 244 0.00064 11.9 0.0 1 1 1.4e-05 0.0013 10.9 0.0 3 51 8 55 6 160 0.69 # 16669 # 17430 # -1 # ID=2_16;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 2_16 - 254 ATP_bind_1 PF03029.12 238 3.3e-05 16.3 0.0 1 1 5.5e-07 5.1e-05 15.7 0.0 6 56 17 67 15 128 0.91 # 16669 # 17430 # -1 # ID=2_16;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 2_16 - 254 SRP54 PF00448.17 196 7.6e-05 15.0 0.1 1 2 6.3e-05 0.0059 8.8 0.1 11 39 17 45 6 94 0.85 # 16669 # 17430 # -1 # ID=2_16;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 2_16 - 254 SRP54 PF00448.17 196 7.6e-05 15.0 0.1 2 2 0.0015 0.14 4.4 0.0 76 92 117 133 88 142 0.72 # 16669 # 17430 # -1 # ID=2_16;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 2_10 - 512 NAD_synthase PF02540.12 242 3.2e-10 32.1 0.1 1 1 7.7e-12 7.1e-10 30.9 0.1 9 93 206 289 198 305 0.81 # 9883 # 11418 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.296 2_16 - 254 ArsA_ATPase PF02374.10 305 1.2e-14 46.8 0.2 1 1 6.7e-16 3.1e-14 45.4 0.2 7 137 13 135 6 141 0.68 # 16669 # 17430 # -1 # ID=2_16;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 1_50 - 251 ArsA_ATPase PF02374.10 305 9.2e-08 24.2 2.7 1 1 3.5e-09 1.6e-07 23.4 0.7 7 136 13 133 6 137 0.60 # 41265 # 42017 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.264 1_43 - 451 PhoH PF02562.11 205 0.00024 13.2 0.0 1 2 8.4e-05 0.0078 8.2 0.0 5 47 45 89 43 111 0.79 # 35449 # 36801 # -1 # ID=1_43;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_43 - 451 PhoH PF02562.11 205 0.00024 13.2 0.0 2 2 0.0056 0.52 2.3 0.0 119 152 163 196 155 206 0.87 # 35449 # 36801 # -1 # ID=1_43;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 2_16 - 254 AAA_26 PF13500.1 199 0.00079 11.9 0.3 1 1 5.1e-05 0.0047 9.3 0.5 3 31 9 37 7 150 0.84 # 16669 # 17430 # -1 # ID=2_16;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 2_16 - 254 VirC1 PF07015.6 231 3.9e-07 22.1 0.0 1 2 1.8e-07 8.2e-06 17.8 0.0 2 54 7 59 6 75 0.83 # 16669 # 17430 # -1 # ID=2_16;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 2_16 - 254 VirC1 PF07015.6 231 3.9e-07 22.1 0.0 2 2 0.0096 0.45 2.3 0.0 79 113 120 154 103 179 0.78 # 16669 # 17430 # -1 # ID=2_16;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 1_50 - 251 VirC1 PF07015.6 231 3.3e-05 15.8 4.4 1 3 3.5e-06 0.00016 13.6 0.1 2 43 7 47 6 64 0.77 # 41265 # 42017 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.264 1_50 - 251 VirC1 PF07015.6 231 3.3e-05 15.8 4.4 2 3 0.099 4.6 -1.0 0.1 99 117 80 98 73 111 0.78 # 41265 # 42017 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.264 1_50 - 251 VirC1 PF07015.6 231 3.3e-05 15.8 4.4 3 3 0.0049 0.23 3.3 0.1 82 131 122 170 101 214 0.77 # 41265 # 42017 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.264 2_10 - 512 TIGR02432 TIGR02432 189 4e-07 22.6 0.0 1 1 9.4e-09 8.7e-07 21.5 0.0 1 162 217 376 217 383 0.73 # 9883 # 11418 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.296 2_16 - 254 Fer4_NifH PF00142.13 273 1e-08 27.5 0.2 1 1 4.4e-10 2.1e-08 26.5 0.2 8 74 15 83 8 95 0.74 # 16669 # 17430 # -1 # ID=2_16;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 1_50 - 251 Fer4_NifH PF00142.13 273 1.3e-05 17.3 1.1 1 1 3.3e-07 1.5e-05 17.0 0.1 8 61 15 66 8 90 0.78 # 41265 # 42017 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.264 2_10 - 512 QueC PF06508.8 210 2.3e-06 19.8 0.1 1 1 5.6e-07 5.2e-05 15.4 0.1 2 98 218 307 217 385 0.59 # 9883 # 11418 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.296 1_50 - 251 AAA_18 PF13238.1 129 0.00029 14.0 2.0 1 2 6.4e-06 0.00059 13.0 0.3 8 83 17 98 16 138 0.74 # 41265 # 42017 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.264 1_50 - 251 AAA_18 PF13238.1 129 0.00029 14.0 2.0 2 2 0.068 6.4 -0.1 0.1 38 38 211 211 169 245 0.53 # 41265 # 42017 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.264 2_16 - 254 CbiA PF01656.18 195 3.2e-37 120.6 0.2 1 1 8.2e-39 3.8e-37 120.4 0.2 1 174 9 205 9 222 0.75 # 16669 # 17430 # -1 # ID=2_16;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 1_50 - 251 CbiA PF01656.18 195 1.6e-35 115.0 0.7 1 1 4.2e-37 1.9e-35 114.8 0.7 1 175 9 201 9 221 0.81 # 41265 # 42017 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.264 1_17 - 400 Ribosomal_S13 PF00416.17 107 1.6e-05 18.2 0.3 1 1 1.7e-07 1.6e-05 18.2 0.3 30 79 20 69 17 71 0.94 # 15863 # 17062 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 2_10 - 512 PAPS_reduct PF01507.14 174 9.9e-08 24.8 0.0 1 1 1.9e-09 1.7e-07 24.0 0.0 2 160 218 386 217 400 0.72 # 9883 # 11418 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.296 1_50 - 251 AAA_31 PF13614.1 157 4.1e-17 55.3 0.6 1 1 1.4e-18 6.4e-17 54.7 0.6 1 152 7 157 7 162 0.83 # 41265 # 42017 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.264 2_16 - 254 AAA_31 PF13614.1 157 6.6e-14 44.9 0.4 1 1 2.7e-15 1.3e-13 44.0 0.4 1 134 7 141 7 162 0.80 # 16669 # 17430 # -1 # ID=2_16;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 1_43 - 451 Terminase_3 PF04466.8 387 2.5e-11 36.0 2.6 1 1 3.4e-13 3.1e-11 35.7 2.6 6 294 65 346 59 437 0.79 # 35449 # 36801 # -1 # ID=1_43;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 2_10 - 512 tRNA_Me_trans PF03054.11 356 0.00015 13.1 0.0 1 1 2.5e-06 0.00024 12.5 0.0 1 34 216 250 216 285 0.77 # 9883 # 11418 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.296 1_43 - 451 AAA_28 PF13521.1 163 0.00081 12.2 0.1 1 2 0.0014 0.13 5.0 0.0 1 19 63 81 63 94 0.90 # 35449 # 36801 # -1 # ID=1_43;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_43 - 451 AAA_28 PF13521.1 163 0.00081 12.2 0.1 2 2 0.0024 0.22 4.3 0.0 69 110 187 227 168 231 0.79 # 35449 # 36801 # -1 # ID=1_43;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/45c8395d-0a5f-4b67-b467-b783458332e1 # Target file: checkm_output/bins/pGCA_000741005.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000741005.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/45c8395d-0a5f-4b67-b467-b783458332e1 checkm_output/bins/pGCA_000741005.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:42:00 2020 # [ok]