# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_25 - 215 Seryl_tRNA_N PF02403.17 108 0.0022 10.0 16.7 1 1 0.00011 0.006 8.7 16.9 32 99 48 121 27 125 0.70 # 16991 # 17635 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=3bp;gc_cont=0.364 1_9 - 162 SSB PF00436.20 104 3.5e-40 128.1 0.7 1 1 9.1e-42 4.8e-40 127.7 0.7 1 104 2 103 2 103 0.98 # 3854 # 4339 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.434 1_27 - 675 AAA_22 PF13401.1 131 0.00044 12.4 0.5 1 3 0.039 2.1 0.6 0.0 36 69 84 129 61 182 0.72 # 18856 # 20880 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_27 - 675 AAA_22 PF13401.1 131 0.00044 12.4 0.5 2 3 0.00039 0.021 7.0 0.0 7 28 270 291 264 310 0.89 # 18856 # 20880 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_27 - 675 AAA_22 PF13401.1 131 0.00044 12.4 0.5 3 3 0.05 2.7 0.2 0.0 88 110 525 561 498 580 0.70 # 18856 # 20880 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_27 - 675 AAA_17 PF13207.1 121 4.4e-05 16.4 0.2 1 2 1.8e-05 0.00095 12.0 0.0 6 31 274 295 271 399 0.67 # 18856 # 20880 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_27 - 675 AAA_17 PF13207.1 121 4.4e-05 16.4 0.2 2 2 0.084 4.5 0.2 0.0 50 97 449 489 427 556 0.71 # 18856 # 20880 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_27 - 675 AAA_16 PF13191.1 185 0.00045 12.2 0.1 1 1 3e-05 0.0016 10.4 0.0 23 51 266 294 257 310 0.81 # 18856 # 20880 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_27 - 675 AAA_23 PF13476.1 202 0.00012 14.4 3.5 1 2 0.0031 0.16 4.2 0.3 140 201 114 181 17 184 0.61 # 18856 # 20880 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_27 - 675 AAA_23 PF13476.1 202 0.00012 14.4 3.5 2 2 6.5e-05 0.0034 9.7 0.2 22 156 270 482 265 585 0.50 # 18856 # 20880 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_27 - 675 AAA_18 PF13238.1 129 0.00035 12.9 2.4 1 1 1.7e-05 0.0009 11.6 0.0 3 23 272 301 271 355 0.76 # 18856 # 20880 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_27 - 675 AAA_14 PF13173.1 128 5.5e-05 15.1 1.7 1 2 0.00021 0.011 7.6 0.0 5 28 270 299 267 434 0.68 # 18856 # 20880 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_27 - 675 AAA_14 PF13173.1 128 5.5e-05 15.1 1.7 2 2 0.0013 0.071 5.0 0.1 50 102 527 587 466 605 0.70 # 18856 # 20880 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_27 - 675 AAA_29 PF13555.1 62 1.5e-05 16.5 0.1 1 1 6.7e-07 3.5e-05 15.3 0.1 9 40 256 284 254 291 0.81 # 18856 # 20880 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_35 - 870 TraG-D_C PF12696.2 128 3e-32 103.2 2.9 1 1 6.9e-34 3.7e-32 102.9 0.3 1 125 593 709 593 712 0.89 # 25787 # 28396 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_27 - 675 AAA_30 PF13604.1 196 0.00033 12.3 0.0 1 1 1.4e-05 0.00073 11.1 0.0 22 51 271 300 262 315 0.88 # 18856 # 20880 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_27 - 675 FtsK_SpoIIIE PF01580.13 205 0.00066 11.2 2.0 1 2 0.0077 0.41 2.1 0.2 97 156 98 158 81 209 0.68 # 18856 # 20880 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_27 - 675 FtsK_SpoIIIE PF01580.13 205 0.00066 11.2 2.0 2 2 0.00014 0.0073 7.8 0.1 23 60 246 289 233 294 0.69 # 18856 # 20880 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_27 - 675 Dynamin_N PF00350.18 168 0.0081 8.0 4.8 1 2 0.019 1 1.2 0.2 29 75 88 146 65 185 0.60 # 18856 # 20880 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_27 - 675 Dynamin_N PF00350.18 168 0.0081 8.0 4.8 2 2 0.00029 0.015 7.1 0.0 3 22 272 291 271 296 0.87 # 18856 # 20880 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_27 - 675 ABC_tran PF00005.22 137 7.8e-06 18.3 1.0 1 1 5.2e-07 2.7e-05 16.5 0.2 7 35 263 291 259 467 0.89 # 18856 # 20880 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_27 - 675 AAA_10 PF12846.2 304 2.3e-59 193.2 0.8 1 2 0.05 2.6 -0.7 0.1 102 127 105 153 67 210 0.57 # 18856 # 20880 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_27 - 675 AAA_10 PF12846.2 304 2.3e-59 193.2 0.8 2 2 4.3e-61 2.3e-59 193.2 0.8 2 302 268 629 267 631 0.92 # 18856 # 20880 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_40 - 697 Ribosomal_L18p PF00861.17 119 4.4e-05 15.7 1.0 1 2 0.022 1.2 1.5 0.4 4 49 436 481 433 491 0.83 # 31579 # 33669 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=15bp;gc_cont=0.359 1_40 - 697 Ribosomal_L18p PF00861.17 119 4.4e-05 15.7 1.0 2 2 1.9e-05 0.00099 11.4 0.0 28 66 563 601 560 610 0.84 # 31579 # 33669 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=15bp;gc_cont=0.359 1_35 - 870 TrwB_AAD_bind PF10412.4 386 1.8e-18 58.3 0.8 1 2 0.0004 0.021 5.3 0.0 12 131 186 324 176 344 0.74 # 25787 # 28396 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_35 - 870 TrwB_AAD_bind PF10412.4 386 1.8e-18 58.3 0.8 2 2 7e-18 3.7e-16 50.6 0.0 215 364 563 709 526 724 0.76 # 25787 # 28396 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_35 - 870 T4SS-DNA_transf PF02534.9 469 1.9e-32 104.4 1.4 1 2 2.2e-14 1.2e-12 39.1 0.0 44 257 189 421 155 429 0.70 # 25787 # 28396 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_35 - 870 T4SS-DNA_transf PF02534.9 469 1.9e-32 104.4 1.4 2 2 6.3e-22 3.3e-20 64.0 0.3 260 444 548 731 540 743 0.83 # 25787 # 28396 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_9 - 162 tRNA_anti-codon PF01336.20 75 5.6e-07 21.4 0.1 1 1 1.7e-08 9.1e-07 20.8 0.1 27 72 47 95 5 103 0.79 # 3854 # 4339 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.434 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/33190f19-6960-4178-a32f-464f8cf238cf # Target file: checkm_output/bins/pGCA_000737555.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000737555.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/33190f19-6960-4178-a32f-464f8cf238cf checkm_output/bins/pGCA_000737555.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:41:59 2020 # [ok]