# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_28 - 884 DUF87 PF01935.12 229 3.9e-11 34.6 0.1 1 1 1.1e-12 3.9e-11 34.6 0.1 4 224 327 578 324 582 0.69 # 21831 # 24482 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 1_28 - 884 AAA_22 PF13401.1 131 5.5e-05 14.9 0.0 1 2 3.9e-05 0.0014 10.3 0.0 4 28 346 370 343 403 0.90 # 21831 # 24482 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 1_28 - 884 AAA_22 PF13401.1 131 5.5e-05 14.9 0.0 2 2 0.019 0.72 1.5 0.0 89 124 604 640 561 646 0.81 # 21831 # 24482 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 1_28 - 884 FtsK_SpoIIIE PF01580.13 205 4.3e-05 14.5 0.0 1 2 0.0001 0.0038 8.2 0.0 18 63 322 371 309 374 0.74 # 21831 # 24482 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 1_28 - 884 FtsK_SpoIIIE PF01580.13 205 4.3e-05 14.5 0.0 2 2 0.0025 0.093 3.6 0.0 138 181 587 625 523 632 0.76 # 21831 # 24482 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 1_34 - 74 CoA_binding_3 PF13727.1 175 0.00066 11.0 3.5 1 1 1.9e-05 0.00071 10.9 3.5 20 60 13 54 2 69 0.79 # 27890 # 28111 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.369 1_36 - 838 AAA_10 PF12846.2 304 3.7e-41 132.9 0.1 1 1 3.4e-42 6.3e-41 132.2 0.1 3 302 480 776 478 778 0.89 # 28516 # 31029 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.406 1_28 - 884 AAA_10 PF12846.2 304 3.9e-24 77.0 0.0 1 1 5.2e-25 9.7e-24 75.7 0.0 2 294 347 674 346 681 0.73 # 21831 # 24482 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 1_36 - 838 DUF853 PF05872.7 504 2.7e-05 14.1 0.0 1 1 1.4e-06 5e-05 13.2 0.0 261 361 701 795 694 834 0.75 # 28516 # 31029 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.406 1_28 - 884 TrwB_AAD_bind PF10412.4 386 8e-08 22.7 0.0 1 2 0.00032 0.012 5.7 0.1 15 42 346 373 336 398 0.73 # 21831 # 24482 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 1_28 - 884 TrwB_AAD_bind PF10412.4 386 8e-08 22.7 0.0 2 2 6.4e-07 2.4e-05 14.6 0.0 214 330 570 688 564 711 0.81 # 21831 # 24482 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.404 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/61f9e3c6-9ea0-473a-801f-a2aff4c83f9d # Target file: checkm_output/bins/pGCA_000737305.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000737305.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/61f9e3c6-9ea0-473a-801f-a2aff4c83f9d checkm_output/bins/pGCA_000737305.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:41:58 2020 # [ok]