# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_53 - 683 UPF0020 PF01170.13 180 9.9e-06 17.2 0.0 1 1 3.4e-07 1.8e-05 16.4 0.0 31 119 210 295 202 300 0.81 # 45412 # 47460 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_10 - 849 Seryl_tRNA_N PF02403.17 108 0.018 7.2 7.1 1 2 0.00059 0.032 6.4 2.3 59 103 39 84 13 88 0.76 # 9434 # 11980 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.586 1_10 - 849 Seryl_tRNA_N PF02403.17 108 0.018 7.2 7.1 2 2 0.0094 0.51 2.5 0.2 31 97 85 155 81 159 0.71 # 9434 # 11980 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.586 1_23 - 535 Terminase_6 PF03237.10 384 8.8e-10 29.8 0.0 1 1 2.8e-11 1.5e-09 29.0 0.0 5 261 79 360 76 369 0.79 # 19541 # 21145 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.594 1_30 - 468 DNA_methylase PF00145.12 335 4.8e-42 136.2 0.0 1 2 3.3e-39 1.8e-37 121.2 0.0 3 304 6 388 4 396 0.71 # 23194 # 24597 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.630 1_30 - 468 DNA_methylase PF00145.12 335 4.8e-42 136.2 0.0 2 2 8.4e-05 0.0046 8.1 0.0 308 333 434 459 414 461 0.90 # 23194 # 24597 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.630 1_31 - 417 N6_N4_Mtase PF01555.13 231 1.6e-26 85.2 0.0 1 1 8.1e-27 4.4e-25 80.5 0.0 2 227 190 377 189 381 0.88 # 24594 # 25844 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.571 1_23 - 535 Terminase_1 PF03354.10 477 2.6e-102 334.6 0.0 1 1 7.1e-104 3.8e-102 334.1 0.0 2 474 51 515 50 518 0.95 # 19541 # 21145 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.594 1_53 - 683 N6_Mtase PF02384.11 311 2.4e-54 176.5 0.0 1 1 6.2e-56 3.3e-54 176.0 0.0 3 278 155 461 153 495 0.86 # 45412 # 47460 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_31 - 417 Methyltransf_26 PF13659.1 117 5.7e-11 34.6 0.4 1 2 4e-08 1.1e-06 20.8 0.0 34 115 113 245 52 247 0.56 # 24594 # 25844 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.571 1_31 - 417 Methyltransf_26 PF13659.1 117 5.7e-11 34.6 0.4 2 2 2.2e-05 0.00059 11.9 0.1 4 48 345 388 342 406 0.83 # 24594 # 25844 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.571 1_53 - 683 Methyltransf_26 PF13659.1 117 6e-11 34.5 0.0 1 1 5.2e-12 1.4e-10 33.3 0.0 4 83 211 295 209 345 0.82 # 45412 # 47460 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_31 - 417 Cons_hypoth95 PF03602.10 183 1.1e-06 20.1 0.0 1 2 0.00055 0.03 5.7 0.0 108 126 183 200 163 209 0.76 # 24594 # 25844 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.571 1_31 - 417 Cons_hypoth95 PF03602.10 183 1.1e-06 20.1 0.0 2 2 7e-06 0.00038 11.9 0.0 42 86 341 384 333 411 0.70 # 24594 # 25844 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.571 1_51 - 1009 ResIII PF04851.10 184 1.9e-11 36.2 0.3 1 1 2.3e-12 6.1e-11 34.5 0.3 4 164 278 453 276 491 0.70 # 41192 # 44218 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.592 1_36 - 458 ResIII PF04851.10 184 1.2e-05 17.3 0.0 1 2 6.1e-06 0.00017 13.5 0.0 2 58 3 58 2 73 0.90 # 28910 # 30283 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.602 1_36 - 458 ResIII PF04851.10 184 1.2e-05 17.3 0.0 2 2 0.035 0.94 1.3 0.0 147 183 122 162 104 163 0.68 # 28910 # 30283 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.602 1_51 - 1009 DEAD PF00270.24 169 4.7e-08 24.7 1.1 1 1 4.5e-09 1.2e-07 23.4 1.1 14 150 299 437 282 496 0.69 # 41192 # 44218 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.592 1_36 - 458 DEAD PF00270.24 169 5.9e-08 24.4 0.0 1 1 4.1e-09 1.1e-07 23.5 0.0 2 162 7 161 6 168 0.86 # 28910 # 30283 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.602 1_36 - 458 SNF2_N PF00176.18 299 8.1e-21 66.0 0.0 1 1 2.4e-22 1.3e-20 65.4 0.0 34 264 28 263 11 290 0.81 # 28910 # 30283 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.602 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f2d2925e-3fa8-47ca-a1eb-254154d1ef06 # Target file: checkm_output/bins/pGCA_000732945.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000732945.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f2d2925e-3fa8-47ca-a1eb-254154d1ef06 checkm_output/bins/pGCA_000732945.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:41:55 2020 # [ok]