# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_57 - 204 Methyltransf_12 PF08242.7 99 4e-14 45.7 0.1 1 1 2.1e-15 1.8e-13 43.6 0.0 1 99 42 134 39 134 0.78 # 52387 # 52998 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.350 1_57 - 204 UPF0020 PF01170.13 180 1.8e-07 23.6 0.0 1 1 3.9e-09 3.5e-07 22.7 0.0 60 112 57 107 14 109 0.83 # 52387 # 52998 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.350 1_30 - 550 ABC_ATPase PF09818.4 448 0.00058 11.2 0.1 1 2 6.6e-06 0.00058 11.2 0.1 240 266 20 46 5 54 0.83 # 27285 # 28934 # 1 # ID=1_30;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.268 1_30 - 550 ABC_ATPase PF09818.4 448 0.00058 11.2 0.1 2 2 0.043 3.8 -1.4 0.0 31 91 311 372 286 406 0.63 # 27285 # 28934 # 1 # ID=1_30;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.268 1_25 - 267 MipZ PF09140.6 261 1.7e-12 39.7 0.0 1 2 1.7e-09 7.8e-08 24.4 0.0 3 64 5 65 3 83 0.84 # 24177 # 24977 # 1 # ID=1_25;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.411 1_25 - 267 MipZ PF09140.6 261 1.7e-12 39.7 0.0 2 2 4.3e-06 0.00019 13.3 0.0 83 124 115 156 101 163 0.78 # 24177 # 24977 # 1 # ID=1_25;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.411 2_15 - 280 MipZ PF09140.6 261 6.3e-07 21.4 0.6 1 1 2.7e-06 0.00012 13.9 0.6 3 128 27 172 25 175 0.60 # 16821 # 17660 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.338 2_15 - 280 YhjQ PF06564.7 244 6.5e-10 31.5 0.0 1 1 2e-11 8.7e-10 31.0 0.0 1 149 24 174 24 184 0.82 # 16821 # 17660 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.338 1_25 - 267 YhjQ PF06564.7 244 4.8e-07 22.1 0.0 1 1 8.7e-08 3.9e-06 19.1 0.0 7 154 7 167 1 172 0.64 # 24177 # 24977 # 1 # ID=1_25;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.411 1_57 - 204 Methyltransf_18 PF12847.2 112 2e-12 40.5 0.0 1 1 3.9e-14 3.5e-12 39.7 0.0 3 110 39 137 37 139 0.89 # 52387 # 52998 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.350 1_31 - 373 UvrD_C_2 PF13538.1 104 0.00011 15.1 0.1 1 1 6e-06 0.00053 12.9 0.0 64 104 305 354 267 354 0.77 # 28931 # 30049 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_2 - 848 DUF87 PF01935.12 229 8.7e-11 34.8 0.5 1 2 9.8e-13 8.7e-11 34.8 0.5 9 224 347 592 338 596 0.64 # 2216 # 4759 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.413 1_2 - 848 DUF87 PF01935.12 229 8.7e-11 34.8 0.5 2 2 0.083 7.4 -1.0 1.4 125 171 748 826 735 845 0.51 # 2216 # 4759 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.413 1_31 - 373 AAA_22 PF13401.1 131 1.4e-05 18.0 0.1 1 2 0.0011 0.05 6.5 0.0 10 95 8 84 5 100 0.78 # 28931 # 30049 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_31 - 373 AAA_22 PF13401.1 131 1.4e-05 18.0 0.1 2 2 0.00014 0.0063 9.4 0.0 77 125 142 187 110 193 0.76 # 28931 # 30049 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_2 - 848 AAA_22 PF13401.1 131 1.8e-05 17.6 0.0 1 2 2.6e-05 0.0012 11.8 0.0 4 28 360 384 357 457 0.87 # 2216 # 4759 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.413 1_2 - 848 AAA_22 PF13401.1 131 1.8e-05 17.6 0.0 2 2 0.017 0.78 2.7 0.0 87 126 614 656 573 661 0.80 # 2216 # 4759 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.413 1_57 - 204 Methyltransf_11 PF08241.7 95 2.6e-20 65.5 0.1 1 2 0.06 5.4 0.4 0.2 28 53 11 41 8 44 0.72 # 52387 # 52998 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.350 1_57 - 204 Methyltransf_11 PF08241.7 95 2.6e-20 65.5 0.1 2 2 1.5e-21 1.3e-19 63.3 0.0 1 94 42 135 42 136 0.97 # 52387 # 52998 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.350 1_25 - 267 SRP54 PF00448.17 196 4.3e-07 22.3 0.7 1 2 3.5e-06 0.00031 12.9 0.5 5 39 5 41 1 44 0.86 # 24177 # 24977 # 1 # ID=1_25;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.411 1_25 - 267 SRP54 PF00448.17 196 4.3e-07 22.3 0.7 2 2 0.00024 0.021 7.0 0.0 63 92 111 139 99 151 0.80 # 24177 # 24977 # 1 # ID=1_25;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.411 1_30 - 550 AAA_15 PF13175.1 415 5.2e-21 67.8 51.1 1 2 1.1e-12 9.4e-11 34.0 11.8 1 115 3 135 3 139 0.72 # 27285 # 28934 # 1 # ID=1_30;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.268 1_30 - 550 AAA_15 PF13175.1 415 5.2e-21 67.8 51.1 2 2 8.6e-17 7.7e-15 47.5 22.7 192 414 119 333 93 334 0.78 # 27285 # 28934 # 1 # ID=1_30;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.268 1_30 - 550 AAA_21 PF13304.1 303 1.6e-17 57.1 14.0 1 2 1.8e-19 1.6e-17 57.1 14.0 1 301 26 333 26 335 0.63 # 27285 # 28934 # 1 # ID=1_30;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.268 1_30 - 550 AAA_21 PF13304.1 303 1.6e-17 57.1 14.0 2 2 0.099 8.8 -1.2 2.3 106 165 432 498 350 545 0.55 # 27285 # 28934 # 1 # ID=1_30;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.268 1_25 - 267 MobB PF03205.9 140 0.00014 14.4 0.1 1 1 5.9e-06 0.00053 12.5 0.1 10 45 13 46 4 47 0.88 # 24177 # 24977 # 1 # ID=1_25;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.411 1_25 - 267 ArsA_ATPase PF02374.10 305 4.6e-08 25.1 0.3 1 2 1.1e-07 4.7e-06 18.5 0.0 9 50 11 52 3 68 0.88 # 24177 # 24977 # 1 # ID=1_25;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.411 1_25 - 267 ArsA_ATPase PF02374.10 305 4.6e-08 25.1 0.3 2 2 0.0035 0.15 3.7 0.0 124 136 128 140 115 144 0.83 # 24177 # 24977 # 1 # ID=1_25;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.411 2_15 - 280 ArsA_ATPase PF02374.10 305 4.5e-07 21.9 0.2 1 1 2.7e-08 1.2e-06 20.5 0.2 7 136 31 152 24 239 0.75 # 16821 # 17660 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.338 1_31 - 373 PhoH PF02562.11 205 0.00013 13.9 0.0 1 2 0.0033 0.29 3.0 0.0 23 44 6 27 1 53 0.83 # 28931 # 30049 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_31 - 373 PhoH PF02562.11 205 0.00013 13.9 0.0 2 2 7.8e-05 0.0069 8.3 0.0 121 162 153 194 151 214 0.88 # 28931 # 30049 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_30 - 550 SMC_N PF02463.14 220 1.9e-13 42.9 14.2 1 1 3.7e-14 3.3e-12 38.8 14.2 1 204 2 336 2 351 0.81 # 27285 # 28934 # 1 # ID=1_30;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.268 1_25 - 267 Fer4_NifH PF00142.13 273 2e-06 19.9 0.1 1 2 1.4e-07 1.2e-05 17.3 0.0 8 63 11 70 4 78 0.80 # 24177 # 24977 # 1 # ID=1_25;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.411 1_25 - 267 Fer4_NifH PF00142.13 273 2e-06 19.9 0.1 2 2 0.024 2.1 0.1 0.0 199 222 184 207 151 264 0.58 # 24177 # 24977 # 1 # ID=1_25;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.411 1_30 - 550 AAA_23 PF13476.1 202 3e-16 53.1 19.3 1 1 3.4e-18 3e-16 53.1 19.3 1 200 5 321 5 330 0.45 # 27285 # 28934 # 1 # ID=1_30;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.268 2_15 - 280 CbiA PF01656.18 195 8.4e-35 112.6 0.0 1 1 2.3e-36 1e-34 112.4 0.0 1 194 27 247 27 248 0.86 # 16821 # 17660 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.338 1_25 - 267 CbiA PF01656.18 195 1.1e-33 109.0 0.0 1 1 3.2e-35 1.4e-33 108.6 0.0 4 189 8 227 5 233 0.71 # 24177 # 24977 # 1 # ID=1_25;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.411 1_57 - 204 Methyltransf_25 PF13649.1 101 3.6e-16 52.2 0.2 1 1 1e-17 9e-16 50.9 0.0 2 85 42 118 41 132 0.83 # 52387 # 52998 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.350 1_30 - 550 AAA_29 PF13555.1 62 6.2e-10 31.3 0.0 1 1 1.7e-11 1.5e-09 30.0 0.0 2 54 4 55 3 60 0.84 # 27285 # 28934 # 1 # ID=1_30;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.268 1_31 - 373 TK PF00265.13 176 0.0024 10.2 5.3 1 3 0.00026 0.023 7.0 0.1 5 54 6 54 3 71 0.66 # 28931 # 30049 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_31 - 373 TK PF00265.13 176 0.0024 10.2 5.3 2 3 0.0015 0.13 4.5 0.2 44 109 119 184 97 191 0.68 # 28931 # 30049 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_31 - 373 TK PF00265.13 176 0.0024 10.2 5.3 3 3 0.045 4 -0.3 0.1 49 96 193 242 170 254 0.59 # 28931 # 30049 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_57 - 204 Ubie_methyltran PF01209.13 233 7.6e-11 34.3 0.0 1 1 1.1e-12 1e-10 33.9 0.0 34 162 28 147 3 168 0.78 # 52387 # 52998 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.350 1_31 - 373 UvrD_C PF13361.1 351 1.1e-05 17.7 1.4 1 2 0.021 1.9 0.5 0.1 3 43 228 271 227 281 0.81 # 28931 # 30049 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_31 - 373 UvrD_C PF13361.1 351 1.1e-05 17.7 1.4 2 2 9.4e-07 8.4e-05 14.8 0.0 296 349 305 356 302 358 0.77 # 28931 # 30049 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_33 - 53 TraG-D_C PF12696.2 128 3.7e-10 32.5 0.0 1 1 8.9e-12 4e-10 32.4 0.0 16 55 10 51 4 52 0.90 # 30825 # 30983 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.434 1_2 - 848 TraG-D_C PF12696.2 128 2.4e-05 16.9 1.1 1 2 6.3e-05 0.0028 10.3 0.0 3 78 619 693 617 704 0.86 # 2216 # 4759 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.413 1_2 - 848 TraG-D_C PF12696.2 128 2.4e-05 16.9 1.1 2 2 0.0068 0.3 3.7 1.1 67 123 791 845 774 846 0.68 # 2216 # 4759 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.413 1_25 - 267 AAA_31 PF13614.1 157 4.3e-12 39.0 0.1 1 1 2.9e-12 1.3e-10 34.2 0.1 9 146 11 158 10 163 0.67 # 24177 # 24977 # 1 # ID=1_25;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.411 2_15 - 280 AAA_31 PF13614.1 157 5.9e-12 38.5 0.0 1 1 2.8e-13 1.3e-11 37.4 0.0 2 156 26 180 25 181 0.79 # 16821 # 17660 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.338 1_35 - 292 Methyltransf_26 PF13659.1 117 8.1e-06 18.6 0.0 1 1 3.2e-07 1.4e-05 17.9 0.0 5 84 37 203 34 236 0.74 # 31571 # 32446 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.336 1_57 - 204 Methyltransf_26 PF13659.1 117 2.2e-05 17.2 0.0 1 1 8.6e-07 3.8e-05 16.5 0.0 5 77 42 108 38 137 0.86 # 52387 # 52998 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.350 1_57 - 204 FmrO PF07091.6 251 0.0008 11.1 0.0 1 1 1.4e-05 0.0013 10.5 0.0 126 165 55 94 27 106 0.83 # 52387 # 52998 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.350 1_31 - 373 AAA_30 PF13604.1 196 9.1e-06 18.1 0.0 1 2 9.6e-06 0.00086 11.6 0.0 22 66 6 48 2 78 0.83 # 28931 # 30049 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_31 - 373 AAA_30 PF13604.1 196 9.1e-06 18.1 0.0 2 2 0.0018 0.16 4.2 0.0 64 133 120 190 111 196 0.75 # 28931 # 30049 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_2 - 848 FtsK_SpoIIIE PF01580.13 205 2.7e-05 16.5 0.1 1 3 0.00016 0.015 7.5 0.0 29 63 350 385 324 388 0.79 # 2216 # 4759 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.413 1_2 - 848 FtsK_SpoIIIE PF01580.13 205 2.7e-05 16.5 0.1 2 3 0.0017 0.15 4.2 0.0 146 181 608 639 554 646 0.76 # 2216 # 4759 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.413 1_2 - 848 FtsK_SpoIIIE PF01580.13 205 2.7e-05 16.5 0.1 3 3 0.019 1.7 0.8 0.0 121 183 642 696 630 701 0.69 # 2216 # 4759 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.413 1_57 - 204 MTS PF05175.9 170 4.8e-05 15.5 0.0 1 1 9.8e-07 8.7e-05 14.7 0.0 30 104 36 107 30 119 0.86 # 52387 # 52998 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.350 1_6 - 74 CoA_binding_3 PF13727.1 175 0.0004 13.0 0.5 1 1 4.9e-06 0.00043 12.9 0.5 21 59 14 53 2 64 0.82 # 7110 # 7331 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.360 1_30 - 550 AAA_27 PF13514.1 1111 3.2e-05 14.5 0.2 1 2 8.2e-07 7.3e-05 13.3 0.1 1 20 29 48 29 53 0.86 # 27285 # 28934 # 1 # ID=1_30;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.268 1_30 - 550 AAA_27 PF13514.1 1111 3.2e-05 14.5 0.2 2 2 0.045 4 -2.4 0.0 80 108 355 383 354 387 0.86 # 27285 # 28934 # 1 # ID=1_30;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.268 1_30 - 550 Dynamin_N PF00350.18 168 0.0011 11.5 2.5 1 2 0.00027 0.024 7.2 0.0 3 18 29 44 28 47 0.92 # 27285 # 28934 # 1 # ID=1_30;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.268 1_30 - 550 Dynamin_N PF00350.18 168 0.0011 11.5 2.5 2 2 0.0075 0.67 2.5 1.4 59 166 217 328 161 330 0.72 # 27285 # 28934 # 1 # ID=1_30;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.268 1_30 - 550 ABC_tran PF00005.22 137 0.0004 13.5 1.5 1 1 7.9e-06 0.0007 12.7 0.0 15 42 28 56 16 147 0.70 # 27285 # 28934 # 1 # ID=1_30;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.268 1_31 - 373 AAA_19 PF13245.1 76 0.0012 11.4 0.0 1 1 2.9e-05 0.0026 10.3 0.0 10 62 4 48 1 63 0.72 # 28931 # 30049 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_8 - 861 AAA_10 PF12846.2 304 9.4e-41 132.9 0.3 1 1 5.5e-42 1.6e-40 132.1 0.3 3 302 479 775 477 777 0.86 # 7742 # 10324 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 1_2 - 848 AAA_10 PF12846.2 304 1.1e-24 80.1 0.4 1 1 9.9e-26 2.9e-24 78.7 0.4 2 295 361 690 360 695 0.68 # 2216 # 4759 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.413 1_25 - 267 AAA_10 PF12846.2 304 0.00061 12.0 0.1 1 1 4.8e-05 0.0014 10.8 0.1 11 49 13 50 11 218 0.91 # 24177 # 24977 # 1 # ID=1_25;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.411 1_31 - 373 AAA_12 PF13087.1 200 1.4e-05 17.3 0.9 1 3 0.036 3.2 -0.2 0.3 108 148 25 63 13 67 0.63 # 28931 # 30049 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_31 - 373 AAA_12 PF13087.1 200 1.4e-05 17.3 0.9 2 3 0.00012 0.011 7.8 0.1 16 38 224 246 210 297 0.76 # 28931 # 30049 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_31 - 373 AAA_12 PF13087.1 200 1.4e-05 17.3 0.9 3 3 0.00048 0.043 5.9 0.0 181 198 339 356 333 358 0.83 # 28931 # 30049 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_20 - 301 LCM PF04072.9 183 7.6e-46 148.7 0.1 1 1 1.1e-47 9.9e-46 148.3 0.1 1 183 10 208 10 208 0.89 # 20311 # 21213 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.436 1_57 - 204 Methyltransf_31 PF13847.1 152 1.9e-18 59.2 0.1 1 1 2.2e-20 1.9e-18 59.2 0.1 19 112 52 140 35 187 0.83 # 52387 # 52998 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.350 1_31 - 373 Viral_helicase1 PF01443.13 234 3.1e-14 45.7 0.2 1 2 1.8e-06 0.00016 14.0 0.0 5 59 9 70 5 83 0.75 # 28931 # 30049 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_31 - 373 Viral_helicase1 PF01443.13 234 3.1e-14 45.7 0.2 2 2 2.2e-10 1.9e-08 26.8 0.1 63 233 152 354 108 355 0.68 # 28931 # 30049 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_8 - 861 DUF853 PF05872.7 504 4e-06 18.1 0.0 1 1 7.9e-08 7.1e-06 17.3 0.0 260 361 699 794 692 807 0.74 # 7742 # 10324 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.412 1_2 - 848 TrwB_AAD_bind PF10412.4 386 1.5e-07 23.1 0.0 1 2 0.00035 0.016 6.5 0.1 15 42 360 387 350 412 0.72 # 2216 # 4759 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.413 1_2 - 848 TrwB_AAD_bind PF10412.4 386 1.5e-07 23.1 0.0 2 2 1.8e-06 7.9e-05 14.1 0.0 217 322 587 694 578 715 0.80 # 2216 # 4759 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.413 1_33 - 53 TrwB_AAD_bind PF10412.4 386 0.00025 12.4 0.0 1 1 6.2e-06 0.00028 12.3 0.0 263 298 14 51 9 52 0.88 # 30825 # 30983 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.434 1_25 - 267 ParA PF10609.4 81 0.00056 12.6 0.2 1 1 2e-05 0.0018 11.0 0.2 2 72 132 206 131 215 0.69 # 24177 # 24977 # 1 # ID=1_25;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.411 1_33 - 53 T4SS-DNA_transf PF02534.9 469 1.8e-07 22.8 0.0 1 1 2.1e-09 1.9e-07 22.7 0.0 321 358 12 51 9 52 0.87 # 30825 # 30983 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.434 1_35 - 292 MethyltransfD12 PF02086.10 260 4.9e-37 120.5 0.5 1 1 6.9e-39 6.1e-37 120.2 0.5 1 235 14 239 14 260 0.81 # 31571 # 32446 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.336 1_57 - 204 Methyltransf_23 PF13489.1 161 7.5e-17 54.2 0.0 1 1 1e-18 9.3e-17 53.9 0.0 7 158 24 181 13 184 0.78 # 52387 # 52998 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.350 1_31 - 373 UvrD-helicase PF00580.16 315 3.9e-17 55.2 7.6 1 2 5.3e-09 4.7e-07 22.1 1.4 14 70 3 53 1 71 0.81 # 28931 # 30049 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_31 - 373 UvrD-helicase PF00580.16 315 3.9e-17 55.2 7.6 2 2 2e-13 1.8e-11 36.6 0.3 243 297 137 192 76 213 0.81 # 28931 # 30049 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.273 2_15 - 280 AAA_25 PF13481.1 194 0.00013 14.1 0.0 1 2 5.4e-06 0.00048 12.3 0.0 42 106 34 96 27 151 0.69 # 16821 # 17660 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.338 2_15 - 280 AAA_25 PF13481.1 194 0.00013 14.1 0.0 2 2 0.073 6.5 -1.2 0.0 166 183 218 235 201 238 0.78 # 16821 # 17660 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.338 1_59 - 528 eIF-1a PF01176.14 65 0.00059 12.0 0.0 1 2 0.00024 0.022 7.0 0.0 39 53 96 110 90 120 0.88 # 54487 # 56070 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 1_59 - 528 eIF-1a PF01176.14 65 0.00059 12.0 0.0 2 2 0.0087 0.77 2.1 0.0 41 55 419 436 416 440 0.77 # 54487 # 56070 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 1_45 - 139 AAA_5 PF07728.9 139 0.0004 12.9 0.0 1 2 1.8e-05 0.0016 11.0 0.0 65 95 33 63 7 72 0.84 # 39857 # 40273 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 1_45 - 139 AAA_5 PF07728.9 139 0.0004 12.9 0.0 2 2 0.06 5.4 -0.5 0.0 32 47 78 93 68 108 0.82 # 39857 # 40273 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.341 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/46c9c408-049a-4c8e-86b5-55917338f6cc # Target file: checkm_output/bins/pGCA_000724485.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000724485.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/46c9c408-049a-4c8e-86b5-55917338f6cc checkm_output/bins/pGCA_000724485.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:41:54 2020 # [ok]