# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_6 - 227 Rad17 PF03215.10 519 1.1e-06 19.1 0.0 1 1 5.2e-08 2e-06 18.2 0.0 44 98 30 86 6 103 0.80 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 227 IstB_IS21 PF01695.12 178 1e-05 16.6 0.1 1 2 3.3e-05 0.0013 9.7 0.0 44 68 28 52 3 62 0.79 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 227 IstB_IS21 PF01695.12 178 1e-05 16.6 0.1 2 2 0.00093 0.036 5.0 0.0 95 152 146 205 120 213 0.72 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_12 - 497 3HCDH_N PF02737.13 180 1.9e-05 16.0 0.4 1 1 2.6e-06 5.1e-05 14.5 0.4 1 33 5 37 5 48 0.91 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_9 - 502 3HCDH_N PF02737.13 180 0.00014 13.1 0.2 1 1 1.7e-05 0.00034 11.9 0.2 1 34 2 35 2 49 0.88 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_12 - 497 GIDA PF01134.17 392 5.7e-08 23.5 3.0 1 2 3e-09 5.9e-08 23.4 0.6 1 32 5 36 5 45 0.88 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_12 - 497 GIDA PF01134.17 392 5.7e-08 23.5 3.0 2 2 0.059 1.2 -0.6 0.1 114 145 245 277 227 280 0.76 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_9 - 502 GIDA PF01134.17 392 1.1e-05 16.0 0.2 1 1 1.1e-06 2.1e-05 15.1 0.2 1 34 2 34 2 44 0.85 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_12 - 497 Pyr_redox_2 PF07992.9 201 5.8e-09 27.6 0.0 1 1 1e-09 2e-08 25.9 0.0 1 37 5 41 5 122 0.90 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_9 - 502 Pyr_redox_2 PF07992.9 201 1.4e-07 23.1 0.0 1 2 1.3e-07 2.5e-06 19.0 0.0 1 41 2 42 2 93 0.86 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 502 Pyr_redox_2 PF07992.9 201 1.4e-07 23.1 0.0 2 2 0.027 0.53 1.7 0.0 67 115 230 273 192 276 0.75 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_33 - 324 NmrA PF05368.8 233 5.4e-06 17.3 0.6 1 1 2.9e-07 1.1e-05 16.3 0.6 1 52 152 205 152 275 0.90 # 26149 # 27120 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 1_6 - 227 AAA_22 PF13401.1 131 7.4e-07 21.0 0.6 1 2 2.4e-06 9.4e-05 14.2 0.1 3 22 30 49 28 52 0.87 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 227 AAA_22 PF13401.1 131 7.4e-07 21.0 0.6 2 2 0.0017 0.065 5.0 0.0 73 124 146 200 92 207 0.76 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_36 - 113 tRNA_anti-like PF12869.2 144 0.00043 11.4 0.1 1 2 0.0021 0.08 4.0 0.0 8 43 3 39 1 55 0.78 # 28792 # 29130 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.251 1_36 - 113 tRNA_anti-like PF12869.2 144 0.00043 11.4 0.1 2 2 0.00081 0.032 5.3 0.0 6 26 86 107 82 111 0.78 # 28792 # 29130 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.251 1_6 - 227 AAA_15 PF13175.1 415 8.5e-10 29.7 7.6 1 2 9.8e-10 3.8e-08 24.3 3.6 12 78 21 96 8 126 0.87 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 227 AAA_15 PF13175.1 415 8.5e-10 29.7 7.6 2 2 0.00011 0.0043 7.6 0.2 333 412 133 202 110 205 0.75 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 227 AAA_17 PF13207.1 121 3.2e-06 19.6 0.3 1 1 1.9e-07 7.5e-06 18.4 0.3 2 19 34 51 33 121 0.92 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 227 AAA_21 PF13304.1 303 3.8e-17 54.7 2.8 1 1 1e-15 3.9e-14 44.8 2.8 1 298 33 201 33 205 0.67 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 227 MobB PF03205.9 140 5.2e-05 14.6 0.0 1 1 3.2e-06 0.00013 13.3 0.0 3 20 34 51 32 84 0.89 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_33 - 324 ADH_zinc_N PF00107.21 130 4.2e-17 53.5 0.0 1 1 2.1e-18 8.4e-17 52.5 0.0 1 117 160 270 160 285 0.90 # 26149 # 27120 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 1_6 - 227 T2SE PF00437.15 272 3.7e-06 17.5 0.1 1 2 1.5e-06 5.9e-05 13.6 0.0 104 148 7 51 2 56 0.86 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 227 T2SE PF00437.15 272 3.7e-06 17.5 0.1 2 2 0.0053 0.21 2.0 0.1 69 134 91 165 75 202 0.77 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_9 - 502 NAD_binding_8 PF13450.1 68 8.8e-19 59.0 0.0 1 1 1.1e-19 2e-18 57.8 0.0 1 67 5 71 5 72 0.97 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_12 - 497 NAD_binding_8 PF13450.1 68 4.9e-16 50.2 0.0 1 1 6.9e-17 1.4e-15 48.8 0.0 1 66 8 70 8 72 0.91 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_9 - 502 GMC_oxred_N PF00732.14 296 0.00014 12.6 0.0 1 2 0.0018 0.069 3.8 0.0 4 25 4 25 1 76 0.81 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 502 GMC_oxred_N PF00732.14 296 0.00014 12.6 0.0 2 2 0.00024 0.0094 6.6 0.0 202 234 231 263 223 276 0.83 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 502 F420_oxidored PF03807.12 96 0.00036 12.6 0.6 1 1 2.2e-05 0.00085 11.4 0.6 1 31 2 29 2 44 0.87 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 502 FAD_binding_3 PF01494.14 356 0.00031 11.4 0.2 1 1 1.4e-05 0.00054 10.6 0.2 3 34 2 33 1 38 0.90 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_6 - 227 SMC_N PF02463.14 220 5.5e-12 36.9 4.3 1 1 9.2e-13 3.6e-11 34.2 4.3 17 212 23 215 7 222 0.74 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 227 Arch_ATPase PF01637.13 234 1.9e-05 16.0 0.6 1 1 1.2e-06 4.6e-05 14.7 0.6 10 82 23 92 18 216 0.67 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 227 AAA_16 PF13191.1 185 4.5e-07 21.6 0.0 1 1 1.4e-08 5.3e-07 21.3 0.0 19 70 26 75 13 164 0.84 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 227 AAA_23 PF13476.1 202 5.7e-05 15.0 6.2 1 1 2.4e-06 9.2e-05 14.4 6.2 10 86 21 99 16 211 0.62 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 227 AAA_18 PF13238.1 129 1.8e-06 19.9 0.2 1 1 1.5e-07 6e-06 18.2 0.0 1 42 34 75 34 139 0.68 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_31 - 246 adh_short PF00106.20 167 4.1e-35 112.7 0.0 1 1 1.5e-36 5.9e-35 112.2 0.0 1 165 7 169 7 171 0.93 # 24545 # 25282 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_28 - 492 CbiA PF01656.18 195 0.00053 11.0 2.0 1 1 6.3e-05 0.0025 8.8 2.0 8 34 120 146 115 226 0.78 # 21127 # 22602 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.297 1_6 - 227 KaiC PF06745.8 227 3.3e-05 14.6 0.7 1 2 0.00024 0.0095 6.6 0.1 16 35 28 47 20 60 0.88 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 227 KaiC PF06745.8 227 3.3e-05 14.6 0.7 2 2 0.00024 0.0095 6.6 0.1 137 179 177 217 148 225 0.74 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_12 - 497 HI0933_like PF03486.9 409 1e-09 28.9 1.0 1 2 2.1e-09 4.1e-08 23.6 0.5 2 39 5 42 4 44 0.96 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_12 - 497 HI0933_like PF03486.9 409 1e-09 28.9 1.0 2 2 0.0027 0.053 3.4 0.0 109 159 226 277 211 280 0.80 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_9 - 502 HI0933_like PF03486.9 409 1.4e-08 25.1 1.2 1 1 1.1e-09 2.2e-08 24.4 0.6 2 38 2 38 1 41 0.93 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_6 - 227 AAA_29 PF13555.1 62 2.7e-07 21.7 0.1 1 1 1.5e-08 5.7e-07 20.7 0.1 17 40 26 48 19 53 0.82 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_12 - 497 FAD_binding_2 PF00890.19 417 5.9e-12 36.6 0.4 1 2 2.1e-09 4e-08 24.0 0.7 2 36 6 40 5 44 0.93 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_12 - 497 FAD_binding_2 PF00890.19 417 5.9e-12 36.6 0.4 2 2 3.2e-05 0.00061 10.2 0.0 139 182 224 268 158 284 0.82 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_9 - 502 FAD_binding_2 PF00890.19 417 1e-06 19.4 0.7 1 1 9.3e-08 1.8e-06 18.5 0.4 2 36 3 37 2 43 0.93 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_31 - 246 KR PF08659.5 181 2.1e-16 51.7 0.0 1 1 7.8e-18 3e-16 51.1 0.0 2 168 8 171 8 202 0.88 # 24545 # 25282 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_9 - 502 Thi4 PF01946.12 230 4.1e-06 17.6 0.3 1 1 5.7e-07 1.1e-05 16.2 0.1 19 56 2 39 1 63 0.91 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_12 - 497 Thi4 PF01946.12 230 0.00034 11.3 0.6 1 1 4e-05 0.00079 10.1 0.2 18 54 4 40 1 44 0.93 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_12 - 497 Pyr_redox_3 PF13738.1 203 7.8e-09 27.4 0.0 1 2 7.7e-08 1.5e-06 19.9 0.0 1 41 7 46 7 109 0.88 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_12 - 497 Pyr_redox_3 PF13738.1 203 7.8e-09 27.4 0.0 2 2 0.0024 0.047 5.3 0.0 82 134 226 280 194 309 0.79 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_9 - 502 Pyr_redox_3 PF13738.1 203 4.4e-07 21.7 0.0 1 1 3.9e-08 7.5e-07 20.9 0.0 1 42 4 44 4 142 0.76 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_6 - 227 MMR_HSR1 PF01926.18 116 7e-07 20.8 1.4 1 1 1.6e-07 6.3e-06 17.8 1.4 2 88 34 216 33 226 0.54 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 227 DUF258 PF03193.11 161 4.7e-08 24.0 0.0 1 1 2.4e-09 9.4e-08 23.0 0.0 22 55 17 51 3 93 0.87 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_9 - 502 NAD_binding_2 PF03446.10 163 0.00016 13.1 0.2 1 1 8.4e-06 0.00033 12.1 0.2 2 35 1 34 1 72 0.87 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_6 - 227 AAA_33 PF13671.1 143 0.0001 13.8 0.1 1 1 3.3e-06 0.00013 13.5 0.1 2 18 34 50 33 206 0.89 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_9 - 502 NAD_Gly3P_dh_N PF01210.18 157 2.4e-06 18.9 0.0 1 1 1.3e-07 5e-06 17.9 0.0 1 40 2 41 2 62 0.84 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_6 - 227 ABC_tran PF00005.22 137 8.1e-35 111.7 0.1 1 1 5.6e-36 1.1e-34 111.3 0.1 1 136 21 169 21 170 0.90 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_2 - 160 ABC_tran PF00005.22 137 2.8e-05 16.0 0.0 1 1 2e-06 3.9e-05 15.6 0.0 55 136 14 100 1 101 0.80 # 619 # 1098 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.277 1_9 - 502 UDPG_MGDP_dh_N PF03721.9 185 5.7e-05 14.1 0.2 1 1 3.1e-06 0.00012 13.0 0.2 1 35 1 35 1 47 0.87 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_31 - 246 NAD_binding_10 PF13460.1 183 3.5e-10 31.7 0.1 1 1 2.7e-11 5.3e-10 31.1 0.1 1 178 9 222 9 227 0.76 # 24545 # 25282 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_33 - 324 NAD_binding_10 PF13460.1 183 7.3e-06 17.7 0.1 1 1 5.1e-07 1e-05 17.2 0.1 1 38 152 192 152 240 0.88 # 26149 # 27120 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 1_6 - 227 AAA_10 PF12846.2 304 2.9e-09 28.3 1.1 1 2 1.9e-06 7.3e-05 13.8 0.3 4 21 34 51 32 65 0.78 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 227 AAA_10 PF12846.2 304 2.9e-09 28.3 1.1 2 2 2.6e-06 0.0001 13.4 0.0 214 262 142 201 61 211 0.74 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_31 - 246 adh_short_C2 PF13561.1 241 1.6e-18 58.9 0.1 1 1 5.3e-20 2.1e-18 58.5 0.1 5 192 15 200 13 221 0.89 # 24545 # 25282 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_6 - 227 SbcCD_C PF13558.1 90 7.4e-05 14.3 0.2 1 1 1.3e-05 0.00052 11.6 0.2 55 88 157 184 133 186 0.76 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_12 - 497 FAD_oxidored PF12831.2 428 1.9e-11 35.2 0.0 1 2 4.5e-11 8.7e-10 29.7 0.0 1 38 5 42 5 121 0.84 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_12 - 497 FAD_oxidored PF12831.2 428 1.9e-11 35.2 0.0 2 2 0.0039 0.075 3.5 0.0 90 142 226 276 203 278 0.83 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_9 - 502 FAD_oxidored PF12831.2 428 4.9e-06 17.3 0.0 1 1 3.7e-07 7.2e-06 16.8 0.0 2 38 3 39 2 83 0.93 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_12 - 497 DAO PF01266.19 358 1.4e-12 38.7 0.1 1 2 6.6e-08 1.3e-06 19.1 0.4 2 35 6 40 5 45 0.93 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_12 - 497 DAO PF01266.19 358 1.4e-12 38.7 0.1 2 2 3.1e-07 5.9e-06 16.9 0.0 117 196 201 277 191 284 0.89 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_9 - 502 DAO PF01266.19 358 8e-12 36.2 0.0 1 2 3.4e-11 6.7e-10 29.9 0.0 1 176 2 251 2 277 0.81 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 502 DAO PF01266.19 358 8e-12 36.2 0.0 2 2 0.021 0.4 1.0 0.0 312 357 442 491 352 492 0.88 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 502 FMO-like PF00743.14 532 2.8e-05 14.0 0.0 1 1 1.1e-06 4.2e-05 13.4 0.0 3 70 2 78 1 118 0.67 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 502 NAD_binding_9 PF13454.1 156 6.4e-06 17.6 0.1 1 1 3.1e-07 1.2e-05 16.7 0.1 1 42 4 40 4 51 0.82 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_31 - 246 Epimerase PF01370.16 236 8.7e-07 20.1 0.3 1 1 1e-07 2e-06 19.0 0.2 1 98 9 117 9 197 0.75 # 24545 # 25282 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_33 - 324 Epimerase PF01370.16 236 0.00013 13.0 0.0 1 1 1e-05 0.0002 12.4 0.0 1 39 152 191 152 216 0.80 # 26149 # 27120 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 1_9 - 502 Pyr_redox PF00070.22 80 3.6e-09 28.6 0.5 1 2 2.1e-08 4.1e-07 22.0 0.1 1 38 2 39 2 46 0.91 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 502 Pyr_redox PF00070.22 80 3.6e-09 28.6 0.5 2 2 0.013 0.25 3.5 0.0 47 67 229 249 223 264 0.77 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_12 - 497 Pyr_redox PF00070.22 80 8e-08 24.3 2.4 1 2 9.5e-06 0.00019 13.5 0.3 2 36 6 40 5 49 0.91 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_12 - 497 Pyr_redox PF00070.22 80 8e-08 24.3 2.4 2 2 0.00011 0.0022 10.0 0.1 42 77 228 265 225 269 0.84 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_12 - 497 UvrC_HhH_N PF08459.6 155 2.6e-05 15.4 0.0 1 1 1.8e-06 7e-05 14.0 0.0 53 122 163 263 105 274 0.85 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_33 - 324 DapB_N PF01113.15 124 2.3e-05 15.9 1.0 1 1 1e-06 4e-05 15.1 0.2 3 97 152 242 150 250 0.78 # 26149 # 27120 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 1_9 - 502 Amino_oxidase PF01593.19 450 4.4e-24 76.8 0.0 1 2 7.9e-21 1.5e-19 61.8 0.0 1 288 10 305 10 392 0.82 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 502 Amino_oxidase PF01593.19 450 4.4e-24 76.8 0.0 2 2 4.9e-06 9.5e-05 13.1 0.0 395 450 440 494 433 494 0.86 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_12 - 497 Amino_oxidase PF01593.19 450 4.4e-18 57.0 0.0 1 2 6.9e-17 1.3e-15 48.8 0.0 1 263 13 282 13 321 0.75 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_12 - 497 Amino_oxidase PF01593.19 450 4.4e-18 57.0 0.0 2 2 0.00065 0.013 6.1 0.0 415 450 459 491 438 491 0.85 # 9754 # 11244 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_22 - 143 TIGR00329 TIGR00329 305 0.00031 11.3 0.1 1 1 8.7e-06 0.00034 11.1 0.1 156 225 14 87 3 123 0.79 # 15954 # 16382 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.259 1_6 - 227 ArgK PF03308.11 267 0.00014 12.2 0.0 1 1 6.3e-06 0.00024 11.4 0.0 14 50 16 52 1 60 0.81 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 227 RNA_helicase PF00910.17 107 0.00018 13.3 0.8 1 2 3.6e-05 0.0014 10.4 0.2 1 18 34 51 34 121 0.88 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 227 RNA_helicase PF00910.17 107 0.00018 13.3 0.8 2 2 0.036 1.4 0.8 0.0 50 91 160 202 142 212 0.72 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_5 - 370 S1 PF00575.18 74 0.00026 12.7 10.0 1 3 0.0019 0.073 4.9 0.2 47 61 199 213 181 226 0.83 # 1799 # 2908 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_5 - 370 S1 PF00575.18 74 0.00026 12.7 10.0 2 3 3.9e-05 0.0015 10.2 1.4 9 70 278 340 270 342 0.84 # 1799 # 2908 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_5 - 370 S1 PF00575.18 74 0.00026 12.7 10.0 3 3 0.023 0.9 1.4 0.1 41 57 351 367 346 368 0.87 # 1799 # 2908 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_9 - 502 IlvN PF07991.7 165 0.00024 12.0 1.5 1 1 1.6e-05 0.00063 10.7 0.8 6 52 2 50 1 102 0.84 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 502 AlaDh_PNT_C PF01262.16 168 1.4e-06 19.6 0.0 1 2 1.8e-07 6.9e-06 17.3 0.0 22 71 2 51 1 84 0.86 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_9 - 502 AlaDh_PNT_C PF01262.16 168 1.4e-06 19.6 0.0 2 2 0.083 3.2 -1.2 0.0 108 129 282 303 234 310 0.71 # 6226 # 7731 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_6 - 227 AAA_25 PF13481.1 194 3.2e-07 21.5 0.0 1 2 1.4e-06 5.3e-05 14.2 0.0 23 50 18 48 3 71 0.80 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 227 AAA_25 PF13481.1 194 3.2e-07 21.5 0.0 2 2 0.00071 0.028 5.4 0.0 162 192 174 204 136 206 0.81 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 1_6 - 227 AAA_28 PF13521.1 163 4.8e-05 14.9 0.0 1 1 2.8e-06 0.00011 13.8 0.0 2 24 34 58 33 76 0.89 # 2905 # 3585 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.342 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/70a1c7c6-ffc3-4eeb-a74b-352d4bdc7a76 # Target file: checkm_output/bins/pGCA_000706685.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000706685.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/70a1c7c6-ffc3-4eeb-a74b-352d4bdc7a76 checkm_output/bins/pGCA_000706685.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:41:52 2020 # [ok]