# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_73 - 233 Mg_chelatase PF01078.16 207 3.1e-05 16.6 0.0 1 1 3.5e-07 4.9e-05 15.9 0.0 22 42 83 103 67 110 0.91 # 51266 # 51964 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.654 2_26 - 87 TIGR00250 TIGR00250 130 3.6e-05 17.0 0.0 1 1 3.1e-07 4.4e-05 16.7 0.0 36 112 8 83 2 85 0.88 # 22646 # 22906 # -1 # ID=2_26;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.521 1_73 - 233 IstB_IS21 PF01695.12 178 3.4e-72 235.0 0.0 1 1 5.7e-74 4.1e-72 234.7 0.0 2 177 37 213 36 214 0.98 # 51266 # 51964 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.654 1_70 - 323 IstB_IS21 PF01695.12 178 0.00068 12.5 0.0 1 1 2.1e-05 0.0015 11.4 0.0 50 104 25 81 2 87 0.73 # 48327 # 49295 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 2_35 - 366 MipZ PF09140.6 261 9.9e-06 18.2 0.0 1 2 2.7e-06 0.00038 13.0 0.0 8 41 88 121 82 132 0.90 # 27683 # 28780 # 1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.565 2_35 - 366 MipZ PF09140.6 261 9.9e-06 18.2 0.0 2 2 0.0032 0.45 2.9 0.0 97 129 225 257 213 263 0.91 # 27683 # 28780 # 1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.565 2_3 - 473 3HCDH_N PF02737.13 180 0.00075 12.6 0.2 1 1 9.2e-06 0.0013 11.8 0.2 1 39 67 105 67 120 0.86 # 1793 # 3211 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 2_23 - 502 UvrD_C_2 PF13538.1 104 1.6e-11 37.7 0.0 1 1 2.9e-13 4.2e-11 36.4 0.0 37 101 394 466 350 468 0.67 # 20386 # 21891 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 2_3 - 473 Pyr_redox_2 PF07992.9 201 7.8e-06 19.3 1.4 1 1 2.8e-07 2e-05 17.9 1.3 1 32 67 98 67 233 0.71 # 1793 # 3211 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 2_6 - 438 Pyr_redox_2 PF07992.9 201 0.0018 11.5 0.4 1 1 4.8e-05 0.0035 10.6 0.2 1 31 12 43 12 59 0.86 # 5923 # 7236 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 1_8 - 260 NmrA PF05368.8 233 3.2e-06 19.9 0.0 1 1 3.9e-08 5.6e-06 19.1 0.0 2 65 8 72 7 82 0.90 # 7418 # 8197 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.519 1_70 - 323 AAA_22 PF13401.1 131 2.3e-06 21.2 0.0 1 1 1.8e-07 6.3e-06 19.8 0.0 9 120 27 144 19 150 0.69 # 48327 # 49295 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_73 - 233 AAA_22 PF13401.1 131 4e-06 20.4 0.1 1 1 2.7e-07 9.7e-06 19.2 0.1 3 37 82 119 80 181 0.78 # 51266 # 51964 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.654 1_76 - 374 AAA_22 PF13401.1 131 2.4e-05 17.9 0.0 1 1 4.6e-06 0.00016 15.2 0.0 42 123 105 184 68 194 0.63 # 54495 # 55616 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.601 2_23 - 502 AAA_22 PF13401.1 131 0.0001 15.8 0.3 1 1 7.1e-05 0.0025 11.4 0.3 4 48 17 72 14 227 0.79 # 20386 # 21891 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_8 - 260 YjeF_N PF03853.10 169 0.00054 13.0 0.3 1 2 1.9e-05 0.0027 10.7 0.1 33 110 11 95 2 136 0.78 # 7418 # 8197 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.519 1_8 - 260 YjeF_N PF03853.10 169 0.00054 13.0 0.3 2 2 0.044 6.3 -0.2 0.0 4 38 163 196 160 198 0.86 # 7418 # 8197 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.519 2_6 - 438 Trp_halogenase PF04820.9 454 7.3e-07 21.5 1.0 1 2 8.7e-07 6.2e-05 15.1 0.1 1 84 12 94 12 132 0.80 # 5923 # 7236 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 2_6 - 438 Trp_halogenase PF04820.9 454 7.3e-07 21.5 1.0 2 2 0.0008 0.058 5.3 0.1 168 221 128 179 111 186 0.77 # 5923 # 7236 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 2_3 - 473 Trp_halogenase PF04820.9 454 1.1e-05 17.6 0.8 1 3 0.00087 0.062 5.2 0.1 1 33 67 96 67 132 0.81 # 1793 # 3211 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 2_3 - 473 Trp_halogenase PF04820.9 454 1.1e-05 17.6 0.8 2 3 5.9e-05 0.0042 9.1 0.0 162 217 176 231 168 252 0.84 # 1793 # 3211 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 2_3 - 473 Trp_halogenase PF04820.9 454 1.1e-05 17.6 0.8 3 3 0.039 2.8 -0.2 0.0 313 371 349 407 315 418 0.70 # 1793 # 3211 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_73 - 233 AAA_17 PF13207.1 121 2.8e-05 18.4 2.2 1 2 0.018 2.6 2.3 0.2 28 66 17 60 1 83 0.67 # 51266 # 51964 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.654 1_73 - 233 AAA_17 PF13207.1 121 2.8e-05 18.4 2.2 2 2 1.3e-06 0.00019 15.7 0.2 3 47 87 135 85 228 0.60 # 51266 # 51964 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.654 1_73 - 233 MobB PF03205.9 140 0.0016 11.6 0.0 1 1 2.5e-05 0.0035 10.5 0.0 4 33 87 116 85 121 0.90 # 51266 # 51964 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.654 2_13 - 308 Semialdhyde_dh PF01118.19 121 9.2e-17 54.9 0.0 1 1 1.1e-18 1.6e-16 54.1 0.0 1 118 6 118 6 121 0.92 # 12103 # 13026 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.650 1_70 - 323 Helicase_C PF00271.26 78 5e-06 19.8 0.0 1 1 6.4e-08 9.2e-06 18.9 0.0 5 48 251 294 247 297 0.93 # 48327 # 49295 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 2_35 - 366 ArsA_ATPase PF02374.10 305 1.5e-07 24.2 0.0 1 2 3.4e-06 0.00024 13.6 0.0 9 43 89 123 81 140 0.88 # 27683 # 28780 # 1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.565 2_35 - 366 ArsA_ATPase PF02374.10 305 1.5e-07 24.2 0.0 2 2 0.00015 0.01 8.2 0.0 123 138 223 238 217 243 0.87 # 27683 # 28780 # 1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.565 1_73 - 233 ArsA_ATPase PF02374.10 305 0.0012 11.3 0.0 1 1 2.5e-05 0.0018 10.7 0.0 4 36 86 118 83 120 0.91 # 51266 # 51964 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.654 1_73 - 233 PhoH PF02562.11 205 4.3e-06 19.5 0.0 1 1 4.7e-08 6.7e-06 18.8 0.0 16 47 80 111 69 133 0.88 # 51266 # 51964 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.654 1_73 - 233 T2SE PF00437.15 272 3.1e-05 16.3 0.0 1 1 6e-07 4.3e-05 15.9 0.0 124 148 79 103 32 110 0.73 # 51266 # 51964 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.654 1_70 - 323 T2SE PF00437.15 272 0.0006 12.1 0.0 1 1 1.2e-05 0.00089 11.6 0.0 115 168 8 62 2 73 0.78 # 48327 # 49295 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 2_6 - 438 NAD_binding_8 PF13450.1 68 3.2e-09 30.2 0.2 1 1 1.3e-10 9.5e-09 28.7 0.2 1 40 15 55 15 86 0.78 # 5923 # 7236 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 2_3 - 473 NAD_binding_8 PF13450.1 68 8.9e-08 25.5 2.7 1 1 2.1e-09 1.5e-07 24.8 0.8 1 31 70 100 70 108 0.94 # 1793 # 3211 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 2_3 - 473 FAD_binding_3 PF01494.14 356 3.8e-26 85.3 0.6 1 1 1.2e-27 8.4e-26 84.2 0.6 4 354 68 415 66 417 0.70 # 1793 # 3211 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 2_6 - 438 FAD_binding_3 PF01494.14 356 2.9e-17 56.1 7.9 1 2 2.3e-07 1.7e-05 17.4 2.0 3 176 12 173 10 182 0.70 # 5923 # 7236 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 2_6 - 438 FAD_binding_3 PF01494.14 356 2.9e-17 56.1 7.9 2 2 7.2e-14 5.1e-12 38.8 0.4 288 353 307 373 304 376 0.94 # 5923 # 7236 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 2_35 - 366 Fer4_NifH PF00142.13 273 6.9e-07 22.1 0.1 1 1 7.2e-09 1e-06 21.5 0.1 7 46 88 127 81 131 0.90 # 27683 # 28780 # 1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.565 1_76 - 374 Arch_ATPase PF01637.13 234 2.6e-06 20.7 0.0 1 1 7.3e-08 1e-05 18.7 0.0 21 186 28 208 16 255 0.66 # 54495 # 55616 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.601 1_73 - 233 AAA_16 PF13191.1 185 1.3e-05 18.7 0.6 1 2 0.095 14 -1.0 0.0 86 128 34 73 12 85 0.54 # 51266 # 51964 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.654 1_73 - 233 AAA_16 PF13191.1 185 1.3e-05 18.7 0.6 2 2 1.8e-07 2.6e-05 17.7 0.3 23 97 82 156 62 213 0.68 # 51266 # 51964 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.654 1_8 - 260 adh_short PF00106.20 167 1.2e-22 74.0 0.1 1 1 1.1e-24 1.5e-22 73.6 0.1 2 166 6 171 5 172 0.91 # 7418 # 8197 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.519 1_71 - 301 AAA_13 PF13166.1 712 0.024 6.4 20.8 1 1 0.00031 0.044 5.5 20.8 256 455 93 292 67 298 0.61 # 49655 # 50557 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.660 2_13 - 308 GFO_IDH_MocA PF01408.17 120 0.00029 14.8 0.0 1 1 4.5e-06 0.00065 13.7 0.0 2 87 6 95 5 99 0.79 # 12103 # 13026 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.650 2_35 - 366 CbiA PF01656.18 195 3.6e-23 75.4 0.0 1 1 3.4e-25 4.9e-23 74.9 0.0 5 158 87 293 83 329 0.78 # 27683 # 28780 # 1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.565 1_73 - 233 KaiC PF06745.8 227 3e-05 16.6 0.0 1 1 2.6e-07 3.7e-05 16.3 0.0 16 89 80 154 64 188 0.82 # 51266 # 51964 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.654 1_76 - 374 AAA_14 PF13173.1 128 5.2e-07 23.1 0.0 1 2 0.0059 0.42 3.9 0.0 5 21 30 46 27 87 0.77 # 54495 # 55616 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.601 1_76 - 374 AAA_14 PF13173.1 128 5.2e-07 23.1 0.0 2 2 6.8e-07 4.9e-05 16.7 0.0 42 104 124 192 112 209 0.73 # 54495 # 55616 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.601 1_73 - 233 AAA_14 PF13173.1 128 0.00035 13.9 0.0 1 1 8.1e-06 0.00058 13.2 0.0 3 74 84 157 82 190 0.61 # 51266 # 51964 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.654 2_6 - 438 HI0933_like PF03486.9 409 0.00019 13.3 0.0 1 2 1.4e-05 0.001 11.0 0.1 2 37 12 48 11 49 0.89 # 5923 # 7236 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 2_6 - 438 HI0933_like PF03486.9 409 0.00019 13.3 0.0 2 2 0.036 2.6 -0.3 0.0 113 166 119 169 112 172 0.74 # 5923 # 7236 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 2_3 - 473 HI0933_like PF03486.9 409 0.0019 10.1 1.9 1 1 2.6e-05 0.0019 10.1 0.6 2 35 67 100 66 109 0.93 # 1793 # 3211 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_73 - 233 AAA_29 PF13555.1 62 0.00036 13.5 0.0 1 1 6.1e-06 0.00087 12.3 0.0 22 37 82 97 76 103 0.81 # 51266 # 51964 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.654 2_3 - 473 FAD_binding_2 PF00890.19 417 1e-05 17.9 1.6 1 1 1.8e-07 1.3e-05 17.6 0.5 2 36 68 102 67 132 0.88 # 1793 # 3211 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 2_6 - 438 FAD_binding_2 PF00890.19 417 0.00072 11.8 1.2 1 1 1.5e-05 0.0011 11.2 1.2 2 35 13 47 12 139 0.92 # 5923 # 7236 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 1_73 - 233 AAA PF00004.24 132 8.8e-06 19.4 0.0 1 1 2.3e-07 1.6e-05 18.5 0.0 1 67 86 153 86 188 0.73 # 51266 # 51964 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.654 1_70 - 323 AAA PF00004.24 132 0.00016 15.3 0.0 1 1 6.6e-06 0.00047 13.8 0.0 2 74 26 129 25 172 0.70 # 48327 # 49295 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_73 - 233 Bac_DnaA PF00308.13 219 3.9e-06 20.0 0.0 1 1 3.8e-08 5.4e-06 19.6 0.0 32 129 82 176 63 187 0.82 # 51266 # 51964 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.654 2_23 - 502 UvrD_C PF13361.1 351 2.6e-15 50.0 0.1 1 1 3.8e-17 5.4e-15 49.0 0.1 244 346 363 468 329 471 0.71 # 20386 # 21891 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_8 - 260 KR PF08659.5 181 2e-05 17.7 0.5 1 1 4.2e-07 6.1e-05 16.2 0.5 4 153 8 157 6 180 0.70 # 7418 # 8197 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.519 2_6 - 438 Thi4 PF01946.12 230 0.00016 14.2 0.2 1 1 2e-06 0.00028 13.4 0.2 19 54 12 48 2 65 0.81 # 5923 # 7236 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 1_21 - 262 PAPS_reduct PF01507.14 174 3.6e-08 26.8 0.0 1 1 7.6e-10 5.4e-08 26.2 0.0 99 172 24 102 5 104 0.88 # 16593 # 17378 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.588 1_56 - 601 PAPS_reduct PF01507.14 174 6.6e-08 25.9 0.0 1 1 2.4e-09 1.7e-07 24.6 0.0 3 148 46 238 44 243 0.67 # 32849 # 34651 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.605 1_73 - 233 Sigma54_activat PF00158.21 168 0.00024 14.0 0.0 1 1 3.2e-06 0.00046 13.1 0.0 19 56 80 117 68 179 0.73 # 51266 # 51964 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.654 2_3 - 473 Pyr_redox_3 PF13738.1 203 5.7e-07 23.2 0.0 1 1 2e-08 1.4e-06 21.9 0.0 1 147 69 234 69 259 0.75 # 1793 # 3211 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 2_6 - 438 Pyr_redox_3 PF13738.1 203 7.5e-05 16.2 0.0 1 1 2.3e-06 0.00017 15.1 0.0 1 145 14 176 14 209 0.67 # 5923 # 7236 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 2_23 - 502 FTHFS PF01268.14 557 0.002 9.5 0.7 1 1 8e-05 0.011 7.0 0.7 153 206 122 202 22 228 0.61 # 20386 # 21891 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 2_35 - 366 AAA_31 PF13614.1 157 5.5e-05 16.5 0.1 1 2 0.0002 0.029 7.7 0.0 9 47 89 127 83 143 0.85 # 27683 # 28780 # 1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.565 2_35 - 366 AAA_31 PF13614.1 157 5.5e-05 16.5 0.1 2 2 0.00046 0.066 6.5 0.1 117 156 226 264 223 265 0.80 # 27683 # 28780 # 1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.565 2_23 - 502 AAA_30 PF13604.1 196 2.7e-07 23.8 0.4 1 2 4.8e-06 0.00034 13.6 0.1 3 48 6 45 4 114 0.79 # 20386 # 21891 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 2_23 - 502 AAA_30 PF13604.1 196 2.7e-07 23.8 0.4 2 2 0.00029 0.02 7.8 0.0 72 163 167 260 137 283 0.68 # 20386 # 21891 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_70 - 323 AAA_30 PF13604.1 196 1.9e-05 17.7 0.0 1 2 2.9e-06 0.00021 14.3 0.0 2 105 6 125 5 147 0.71 # 48327 # 49295 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_70 - 323 AAA_30 PF13604.1 196 1.9e-05 17.7 0.0 2 2 0.049 3.5 0.5 0.0 35 82 216 268 211 284 0.77 # 48327 # 49295 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 2_6 - 438 Lycopene_cycl PF05834.7 374 6.1e-07 22.0 0.0 1 1 4.1e-08 3e-06 19.7 0.0 2 142 13 169 12 191 0.80 # 5923 # 7236 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 2_3 - 473 Lycopene_cycl PF05834.7 374 6.9e-06 18.5 1.7 1 2 0.012 0.87 1.7 0.2 2 31 68 95 68 104 0.77 # 1793 # 3211 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 2_3 - 473 Lycopene_cycl PF05834.7 374 6.9e-06 18.5 1.7 2 2 9.2e-07 6.6e-05 15.3 0.0 79 151 163 235 155 249 0.86 # 1793 # 3211 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_73 - 233 AAA_19 PF13245.1 76 9.9e-06 18.7 0.0 1 1 4.4e-07 2.1e-05 17.7 0.0 8 59 81 127 68 143 0.75 # 51266 # 51964 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.654 1_70 - 323 AAA_19 PF13245.1 76 1.3e-05 18.3 0.0 1 2 2.2e-05 0.001 12.2 0.0 17 42 29 50 19 80 0.84 # 48327 # 49295 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_70 - 323 AAA_19 PF13245.1 76 1.3e-05 18.3 0.0 2 2 0.011 0.52 3.6 0.0 38 65 224 253 212 266 0.76 # 48327 # 49295 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 2_23 - 502 AAA_19 PF13245.1 76 0.00049 13.3 0.1 1 1 3.3e-05 0.0016 11.7 0.1 15 51 22 52 12 75 0.81 # 20386 # 21891 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_8 - 260 NAD_binding_10 PF13460.1 183 2.1e-05 18.0 0.1 1 1 2.8e-07 4e-05 17.1 0.1 2 58 8 69 7 73 0.88 # 7418 # 8197 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.519 1_70 - 323 AAA_10 PF12846.2 304 9.5e-05 15.3 0.0 1 2 0.00081 0.058 6.2 0.0 6 36 27 58 25 77 0.89 # 48327 # 49295 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_70 - 323 AAA_10 PF12846.2 304 9.5e-05 15.3 0.0 2 2 0.00044 0.032 7.0 0.0 217 235 110 128 90 175 0.80 # 48327 # 49295 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_73 - 233 AAA_10 PF12846.2 304 0.00019 14.3 0.0 1 1 3.5e-06 0.00025 13.9 0.0 2 47 84 141 83 230 0.63 # 51266 # 51964 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.654 1_8 - 260 adh_short_C2 PF13561.1 241 1.1e-23 77.6 0.1 1 1 9.1e-26 1.3e-23 77.4 0.1 3 240 13 254 11 255 0.86 # 7418 # 8197 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.519 2_23 - 502 AAA_12 PF13087.1 200 5.6e-07 22.5 0.0 1 1 7.5e-09 1.1e-06 21.6 0.0 98 197 365 470 358 472 0.85 # 20386 # 21891 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 2_6 - 438 DAO PF01266.19 358 1.3e-11 37.4 0.6 1 2 1.8e-09 1.3e-07 24.2 0.3 2 71 13 86 12 94 0.76 # 5923 # 7236 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 2_6 - 438 DAO PF01266.19 358 1.3e-11 37.4 0.6 2 2 1.2e-05 0.00086 11.6 0.0 131 205 97 171 87 250 0.80 # 5923 # 7236 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 2_3 - 473 DAO PF01266.19 358 5.9e-06 18.7 0.6 1 2 3.7e-06 0.00026 13.3 0.7 2 32 68 99 67 154 0.84 # 1793 # 3211 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 2_3 - 473 DAO PF01266.19 358 5.9e-06 18.7 0.6 2 2 0.0048 0.34 3.1 0.0 163 203 185 225 173 263 0.91 # 1793 # 3211 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_70 - 323 ResIII PF04851.10 184 9.9e-17 54.7 0.0 1 1 1.2e-17 5.5e-16 52.3 0.0 2 183 1 151 1 152 0.78 # 48327 # 49295 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_73 - 233 ResIII PF04851.10 184 4.6e-06 20.0 0.0 1 1 1.3e-07 6.1e-06 19.6 0.0 15 50 70 108 32 133 0.76 # 51266 # 51964 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.654 2_23 - 502 ResIII PF04851.10 184 0.001 12.3 0.0 1 1 5e-05 0.0024 11.1 0.0 28 71 20 82 3 198 0.57 # 20386 # 21891 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_70 - 323 Zot PF05707.7 193 0.00089 12.1 0.0 1 1 1.3e-05 0.0019 11.1 0.0 5 95 27 129 23 136 0.68 # 48327 # 49295 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_71 - 301 DUF3584 PF12128.3 1201 0.081 3.5 41.1 1 1 0.0013 0.19 2.3 41.0 343 536 105 293 68 297 0.78 # 49655 # 50557 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.660 2_23 - 502 Viral_helicase1 PF01443.13 234 0.00011 15.2 0.3 1 2 0.0057 0.82 2.5 0.0 5 23 24 45 22 76 0.69 # 20386 # 21891 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 2_23 - 502 Viral_helicase1 PF01443.13 234 0.00011 15.2 0.3 2 2 4.4e-05 0.0063 9.4 0.0 166 231 385 467 347 469 0.70 # 20386 # 21891 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 2_6 - 438 NAD_binding_9 PF13454.1 156 2.8e-11 36.8 0.1 1 2 2.2e-08 1.5e-06 21.4 0.2 1 37 14 47 14 61 0.90 # 5923 # 7236 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 2_6 - 438 NAD_binding_9 PF13454.1 156 2.8e-11 36.8 0.1 2 2 7.4e-06 0.00053 13.2 0.0 101 153 115 165 79 168 0.90 # 5923 # 7236 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 2_3 - 473 NAD_binding_9 PF13454.1 156 7.5e-06 19.2 0.1 1 2 0.00091 0.065 6.4 0.1 1 36 69 99 69 119 0.83 # 1793 # 3211 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 2_3 - 473 NAD_binding_9 PF13454.1 156 7.5e-06 19.2 0.1 2 2 5.2e-05 0.0037 10.4 0.0 93 154 158 222 141 224 0.80 # 1793 # 3211 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_8 - 260 Epimerase PF01370.16 236 3.1e-05 16.9 0.0 1 1 5.5e-07 7.9e-05 15.6 0.0 2 65 8 78 7 112 0.83 # 7418 # 8197 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.519 1_70 - 323 DEAD PF00270.24 169 2.3e-13 43.4 0.0 1 1 1.1e-14 8e-13 41.6 0.0 18 163 26 151 5 158 0.79 # 48327 # 49295 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_73 - 233 DEAD PF00270.24 169 0.00094 12.1 0.0 1 1 3.5e-05 0.0025 10.7 0.0 10 41 79 110 71 130 0.79 # 51266 # 51964 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.654 2_3 - 473 Pyr_redox PF00070.22 80 1.7e-07 25.0 1.2 1 2 2.4e-08 1.7e-06 21.8 0.3 1 46 67 107 67 120 0.85 # 1793 # 3211 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 2_3 - 473 Pyr_redox PF00070.22 80 1.7e-07 25.0 1.2 2 2 0.063 4.5 1.2 0.0 56 77 185 204 168 210 0.68 # 1793 # 3211 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 2_6 - 438 Pyr_redox PF00070.22 80 3.1e-05 17.8 0.6 1 1 2.1e-06 0.00015 15.6 0.3 1 35 12 47 12 54 0.87 # 5923 # 7236 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 1_86 - 338 Methyltransf_27 PF13708.1 194 8.6e-41 133.0 0.0 1 1 9.1e-43 1.3e-40 132.4 0.0 5 194 96 292 93 292 0.94 # 61481 # 62494 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 1_73 - 233 Sigma54_activ_2 PF14532.1 138 0.00012 15.5 0.0 1 1 1.5e-06 0.00021 14.8 0.0 19 96 81 173 64 209 0.65 # 51266 # 51964 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.654 1_82 - 438 TIGR00344 TIGR00344 847 8.2e-05 14.0 0.0 1 2 0.083 12 -3.1 0.0 286 310 4 28 3 36 0.90 # 58143 # 59456 # 1 # ID=1_82;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 1_82 - 438 TIGR00344 TIGR00344 847 8.2e-05 14.0 0.0 2 2 1.4e-06 0.00021 12.7 0.1 681 777 207 300 194 309 0.77 # 58143 # 59456 # 1 # ID=1_82;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 2_6 - 438 Amino_oxidase PF01593.19 450 4.7e-06 19.3 0.0 1 2 0.0011 0.075 5.4 0.0 1 27 20 47 20 47 0.92 # 5923 # 7236 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 2_6 - 438 Amino_oxidase PF01593.19 450 4.7e-06 19.3 0.0 2 2 1.2e-05 0.00086 11.8 0.0 211 260 115 164 93 193 0.89 # 5923 # 7236 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 2_3 - 473 Amino_oxidase PF01593.19 450 8e-06 18.5 0.0 1 2 0.015 1.1 1.5 0.0 1 22 75 96 75 100 0.91 # 1793 # 3211 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 2_3 - 473 Amino_oxidase PF01593.19 450 8e-06 18.5 0.0 2 2 1.7e-06 0.00012 14.6 0.0 224 260 184 220 155 226 0.80 # 1793 # 3211 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 2_23 - 502 UvrD-helicase PF00580.16 315 3.3e-14 46.2 0.1 1 2 2e-06 0.00029 13.6 0.0 2 31 6 35 5 59 0.90 # 20386 # 21891 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 2_23 - 502 UvrD-helicase PF00580.16 315 3.3e-14 46.2 0.1 2 2 1.6e-11 2.3e-09 30.3 0.0 251 302 184 235 82 239 0.90 # 20386 # 21891 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_73 - 233 AAA_25 PF13481.1 194 9.6e-07 21.8 0.4 1 1 5.4e-08 3.9e-06 19.8 0.4 27 62 77 113 44 209 0.74 # 51266 # 51964 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.654 1_76 - 374 AAA_25 PF13481.1 194 0.00043 13.1 0.0 1 1 1.5e-05 0.0011 11.8 0.0 34 155 28 155 23 165 0.79 # 54495 # 55616 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.601 1_70 - 323 SNF2_N PF00176.18 299 8.2e-05 14.9 0.0 1 1 8.2e-07 0.00012 14.4 0.0 125 183 103 161 15 174 0.81 # 48327 # 49295 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.560 1_73 - 233 AAA_5 PF07728.9 139 0.00085 12.5 1.5 1 1 1e-05 0.0015 11.7 0.2 1 19 85 103 85 174 0.83 # 51266 # 51964 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.654 1_73 - 233 APS_kinase PF01583.15 157 0.00011 15.3 0.0 1 1 1.6e-06 0.00023 14.2 0.0 4 37 85 118 82 140 0.88 # 51266 # 51964 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.654 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/9d10f401-ade2-41f9-aed0-2eeb7c5b43de # Target file: checkm_output/bins/pGCA_000661915.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000661915.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/9d10f401-ade2-41f9-aed0-2eeb7c5b43de checkm_output/bins/pGCA_000661915.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:41:51 2020 # [ok]