# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_13 - 253 IstB_IS21 PF01695.12 178 3.1e-49 160.1 0.5 1 1 3e-51 4.2e-49 159.7 0.1 2 177 54 232 53 233 0.95 # 13731 # 14489 # -1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.493 2_16 - 269 MipZ PF09140.6 261 9e-13 41.2 0.0 1 2 2.6e-10 1.8e-08 27.1 0.1 3 72 6 74 4 94 0.79 # 10763 # 11569 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.390 2_16 - 269 MipZ PF09140.6 261 9e-13 41.2 0.0 2 2 7.6e-06 0.00053 12.5 0.0 59 124 89 154 75 160 0.81 # 10763 # 11569 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_7 - 270 MipZ PF09140.6 261 4.4e-10 32.4 0.0 1 2 6.3e-09 4.4e-07 22.6 0.0 2 54 4 56 3 88 0.83 # 3202 # 4011 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.393 1_7 - 270 MipZ PF09140.6 261 4.4e-10 32.4 0.0 2 2 0.00016 0.011 8.1 0.0 73 122 103 152 65 160 0.77 # 3202 # 4011 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.393 1_7 - 270 YhjQ PF06564.7 244 3e-11 36.5 0.0 1 1 5.5e-13 3.8e-11 36.1 0.0 5 152 6 163 1 189 0.81 # 3202 # 4011 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.393 2_16 - 269 YhjQ PF06564.7 244 3.7e-10 32.9 0.0 1 1 7.7e-12 5.4e-10 32.4 0.0 5 150 7 161 1 168 0.82 # 10763 # 11569 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_24 - 140 SSB PF00436.20 104 1.1e-09 31.5 0.1 1 1 1.1e-11 1.5e-09 31.1 0.1 1 99 4 96 4 101 0.90 # 13311 # 13730 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.443 2_36 - 819 DUF87 PF01935.12 229 1.1e-06 21.9 0.1 1 1 5.1e-08 7.1e-06 19.3 0.0 28 98 464 529 463 624 0.84 # 24921 # 27377 # 1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_30 - 643 AAA_22 PF13401.1 131 5.6e-05 16.7 2.0 1 2 0.0046 0.16 5.5 0.0 6 25 241 260 236 291 0.85 # 19756 # 21684 # 1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_30 - 643 AAA_22 PF13401.1 131 5.6e-05 16.7 2.0 2 2 0.00028 0.0097 9.5 0.1 72 131 480 544 415 544 0.74 # 19756 # 21684 # 1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 2_36 - 819 AAA_22 PF13401.1 131 9.3e-05 16.0 1.2 1 2 0.0011 0.039 7.5 0.0 3 23 458 478 454 505 0.82 # 24921 # 27377 # 1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.448 2_36 - 819 AAA_22 PF13401.1 131 9.3e-05 16.0 1.2 2 2 0.034 1.2 2.7 0.0 73 104 656 688 638 703 0.70 # 24921 # 27377 # 1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.448 5_4 - 992 AAA_22 PF13401.1 131 0.0011 12.5 0.2 1 1 0.00097 0.034 7.7 0.0 12 99 58 205 57 226 0.49 # 3611 # 6586 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.397 2_32 - 634 AAA_22 PF13401.1 131 0.0012 12.4 0.0 1 1 0.00052 0.018 8.6 0.1 3 84 148 266 144 277 0.66 # 21606 # 23507 # 1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.426 5_5 - 665 N6_N4_Mtase PF01555.13 231 4.5e-39 127.6 2.0 1 1 5.3e-41 7.4e-39 126.9 0.2 1 225 117 461 117 467 0.75 # 6590 # 8584 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.355 5_2 - 631 Helicase_C PF00271.26 78 2.8e-08 27.0 0.0 1 1 4.5e-10 6.3e-08 25.8 0.0 3 78 484 561 482 561 0.92 # 444 # 2336 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.411 2_16 - 269 ArsA_ATPase PF02374.10 305 1.4e-14 47.2 0.3 1 1 8.4e-16 5.9e-14 45.1 0.3 7 137 10 139 4 144 0.63 # 10763 # 11569 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_7 - 270 ArsA_ATPase PF02374.10 305 4.2e-11 35.7 0.0 1 1 9.6e-13 6.7e-11 35.1 0.0 3 137 4 139 2 181 0.77 # 3202 # 4011 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.393 3_13 - 253 PhoH PF02562.11 205 0.00016 14.3 0.3 1 1 3.5e-06 0.00049 12.7 0.0 15 46 96 127 88 142 0.85 # 13731 # 14489 # -1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_7 - 270 VirC1 PF07015.6 231 4e-06 19.4 1.0 1 2 5.6e-07 3.9e-05 16.2 0.1 2 39 3 40 2 64 0.77 # 3202 # 4011 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.393 1_7 - 270 VirC1 PF07015.6 231 4e-06 19.4 1.0 2 2 0.026 1.8 0.9 0.0 104 137 92 127 86 152 0.84 # 3202 # 4011 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.393 2_16 - 269 VirC1 PF07015.6 231 0.001 11.5 0.7 1 2 3.4e-05 0.0024 10.3 0.1 4 39 6 41 1 72 0.82 # 10763 # 11569 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.390 2_16 - 269 VirC1 PF07015.6 231 0.001 11.5 0.7 2 2 0.096 6.7 -1.0 0.1 117 170 141 195 127 212 0.65 # 10763 # 11569 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.390 2_16 - 269 Fer4_NifH PF00142.13 273 9.8e-09 28.1 0.1 1 1 3e-10 2.1e-08 27.0 0.1 8 52 12 56 4 87 0.83 # 10763 # 11569 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_7 - 270 Fer4_NifH PF00142.13 273 7.1e-07 22.0 0.1 1 1 3e-08 2.1e-06 20.5 0.0 8 53 11 56 3 81 0.83 # 3202 # 4011 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.393 2_16 - 269 CbiA PF01656.18 195 5.2e-34 110.7 0.1 1 1 9.4e-36 6.6e-34 110.4 0.1 2 191 7 230 6 234 0.80 # 10763 # 11569 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_7 - 270 CbiA PF01656.18 195 1.4e-30 99.5 0.0 1 1 2.6e-32 1.8e-30 99.2 0.0 1 183 5 222 5 236 0.80 # 3202 # 4011 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.393 2_22 - 171 GvpD PF07088.6 484 4.2e-05 15.3 0.0 1 1 4.3e-07 6.1e-05 14.8 0.0 3 28 23 48 22 58 0.90 # 15823 # 16335 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.460 1_30 - 643 AAA_29 PF13555.1 62 0.00087 12.2 0.0 1 1 1.9e-05 0.0026 10.7 0.0 24 39 240 255 225 259 0.77 # 19756 # 21684 # 1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_13 - 253 Bac_DnaA PF00308.13 219 2.2e-06 20.8 0.0 1 1 2.9e-08 4e-06 20.0 0.0 32 121 98 186 79 211 0.73 # 13731 # 14489 # -1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_26 - 819 TraG-D_C PF12696.2 128 1.1e-31 102.8 0.0 1 1 3.3e-33 2.3e-31 101.7 0.0 1 127 454 572 454 573 0.86 # 14344 # 16800 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.455 2_32 - 634 TraG-D_C PF12696.2 128 1.2e-30 99.4 0.0 1 1 3.3e-32 2.3e-30 98.5 0.0 2 126 416 532 415 534 0.86 # 21606 # 23507 # 1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.426 2_16 - 269 AAA_31 PF13614.1 157 3.4e-17 56.2 0.3 1 1 1.4e-18 9.7e-17 54.7 0.3 9 154 12 164 4 167 0.79 # 10763 # 11569 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_7 - 270 AAA_31 PF13614.1 157 2.9e-11 36.9 0.0 1 1 7.4e-13 5.2e-11 36.1 0.0 2 153 4 163 3 166 0.86 # 3202 # 4011 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.393 2_11 - 84 AAA_30 PF13604.1 196 0.00012 15.1 0.0 1 1 9.2e-07 0.00013 15.0 0.0 47 88 11 52 3 73 0.82 # 7997 # 8248 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.405 2_36 - 819 FtsK_SpoIIIE PF01580.13 205 0.00068 12.5 0.0 1 1 1.3e-05 0.0018 11.1 0.0 23 64 441 485 428 512 0.75 # 24921 # 27377 # 1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.448 5_5 - 665 Cons_hypoth95 PF03602.10 183 1.2e-05 18.1 0.0 1 2 2e-06 0.00029 13.7 0.0 104 127 108 129 84 135 0.72 # 6590 # 8584 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.355 5_5 - 665 Cons_hypoth95 PF03602.10 183 1.2e-05 18.1 0.0 2 2 0.01 1.5 1.6 0.0 42 55 421 434 397 439 0.75 # 6590 # 8584 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.355 2_32 - 634 AAA_19 PF13245.1 76 0.00018 14.6 0.2 1 1 3.3e-06 0.00047 13.3 0.2 9 28 148 167 144 169 0.85 # 21606 # 23507 # 1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.426 2_36 - 819 AAA_10 PF12846.2 304 1.4e-55 182.2 0.2 1 1 4e-57 1.4e-55 182.2 0.2 2 303 460 753 459 754 0.91 # 24921 # 27377 # 1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_30 - 643 AAA_10 PF12846.2 304 1.6e-43 142.6 0.1 1 1 7.7e-45 2.7e-43 141.8 0.1 2 291 240 581 239 593 0.89 # 19756 # 21684 # 1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_26 - 819 AAA_10 PF12846.2 304 7e-10 32.1 0.0 1 1 3.3e-11 1.2e-09 31.4 0.0 2 271 180 500 179 534 0.72 # 14344 # 16800 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.455 2_32 - 634 AAA_10 PF12846.2 304 2.9e-07 23.5 0.0 1 1 1.7e-08 5.8e-07 22.5 0.0 2 300 150 493 149 496 0.66 # 21606 # 23507 # 1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.426 5_4 - 992 ResIII PF04851.10 184 9.5e-24 77.6 0.7 1 1 8.2e-25 3.8e-23 75.6 0.0 3 183 6 231 4 232 0.89 # 3611 # 6586 # -1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.397 5_2 - 631 ResIII PF04851.10 184 1.9e-09 31.0 0.0 1 1 9.7e-11 4.5e-09 29.7 0.0 35 182 157 295 112 297 0.85 # 444 # 2336 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.411 2_32 - 634 ResIII PF04851.10 184 0.00076 12.7 0.1 1 1 4.4e-05 0.002 11.3 0.1 25 95 149 217 108 257 0.73 # 21606 # 23507 # 1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.426 1_30 - 643 Zot PF05707.7 193 8.3e-07 22.0 0.1 1 2 0.053 7.5 -0.7 0.0 4 16 243 255 242 273 0.75 # 19756 # 21684 # 1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_30 - 643 Zot PF05707.7 193 8.3e-07 22.0 0.1 2 2 4.4e-08 6.1e-06 19.2 0.0 61 129 474 543 444 556 0.77 # 19756 # 21684 # 1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 3_15 - 396 Viral_helicase1 PF01443.13 234 7.7e-06 18.9 0.1 1 2 0.0098 1.4 1.7 0.0 157 208 99 151 80 160 0.64 # 16231 # 17418 # 1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 3_15 - 396 Viral_helicase1 PF01443.13 234 7.7e-06 18.9 0.1 2 2 4.1e-07 5.7e-05 16.1 0.0 47 135 143 227 118 245 0.83 # 16231 # 17418 # 1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 5_2 - 631 DEAD PF00270.24 169 2e-07 24.0 0.0 1 2 2.5e-07 1.8e-05 17.7 0.0 23 136 156 272 124 299 0.71 # 444 # 2336 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.411 5_2 - 631 DEAD PF00270.24 169 2e-07 24.0 0.0 2 2 0.0048 0.34 3.8 0.0 60 112 476 531 471 541 0.83 # 444 # 2336 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.411 1_26 - 819 DEAD PF00270.24 169 0.00017 14.5 0.0 1 1 5.8e-06 0.00041 13.3 0.0 12 46 176 233 166 317 0.73 # 14344 # 16800 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.455 2_32 - 634 TrwB_AAD_bind PF10412.4 386 6e-24 77.7 0.0 1 2 8.5e-08 4e-06 19.0 0.0 15 128 149 269 140 287 0.77 # 21606 # 23507 # 1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.426 2_32 - 634 TrwB_AAD_bind PF10412.4 386 6e-24 77.7 0.0 2 2 3.2e-19 1.5e-17 56.6 0.0 202 378 369 545 320 553 0.87 # 21606 # 23507 # 1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.426 1_26 - 819 TrwB_AAD_bind PF10412.4 386 1.1e-23 76.9 0.0 1 2 0.00015 0.0069 8.3 0.0 16 124 180 306 168 338 0.65 # 14344 # 16800 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_26 - 819 TrwB_AAD_bind PF10412.4 386 1.1e-23 76.9 0.0 2 2 4.4e-22 2.1e-20 66.0 0.0 190 372 397 578 366 586 0.79 # 14344 # 16800 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_30 - 643 TrwB_AAD_bind PF10412.4 386 1.8e-05 16.9 0.0 1 1 6.9e-07 3.2e-05 16.0 0.0 10 57 234 281 227 296 0.90 # 19756 # 21684 # 1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 2_16 - 269 ParA PF10609.4 81 0.00076 12.8 0.1 1 1 2.6e-05 0.0036 10.6 0.0 2 51 130 177 129 193 0.78 # 10763 # 11569 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.390 2_32 - 634 T4SS-DNA_transf PF02534.9 469 1.2e-61 202.0 0.0 1 1 2.3e-63 1.6e-61 201.6 0.0 44 445 145 553 105 576 0.87 # 21606 # 23507 # 1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.426 1_26 - 819 T4SS-DNA_transf PF02534.9 469 1.7e-48 158.7 0.2 1 1 6.4e-50 4.5e-48 157.3 0.0 36 434 172 581 144 585 0.82 # 14344 # 16800 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_30 - 643 AAA_32 PF13654.1 509 0.00073 11.6 0.1 1 1 1.6e-05 0.0022 10.0 0.0 27 56 236 266 230 274 0.84 # 19756 # 21684 # 1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.439 5_5 - 665 MethyltransfD12 PF02086.10 260 9.2e-06 18.6 0.2 1 2 9.3e-07 0.00013 14.8 0.2 171 211 110 147 82 170 0.79 # 6590 # 8584 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.355 5_5 - 665 MethyltransfD12 PF02086.10 260 9.2e-06 18.6 0.2 2 2 0.026 3.6 0.3 0.0 9 39 411 440 408 446 0.76 # 6590 # 8584 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.355 1_24 - 140 tRNA_anti-codon PF01336.20 75 0.00028 14.1 0.0 1 1 3.8e-06 0.00054 13.2 0.0 23 58 39 76 35 101 0.85 # 13311 # 13730 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.443 2_36 - 819 AAA_25 PF13481.1 194 0.00025 13.9 0.6 1 2 0.045 3.1 0.5 0.1 98 152 348 395 331 401 0.70 # 24921 # 27377 # 1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.448 2_36 - 819 AAA_25 PF13481.1 194 0.00025 13.9 0.6 2 2 8.5e-05 0.006 9.4 0.0 34 85 460 503 441 522 0.78 # 24921 # 27377 # 1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.448 3_13 - 253 AAA_25 PF13481.1 194 0.0009 12.0 0.5 1 1 5.4e-05 0.0038 10.0 0.2 30 58 97 125 71 138 0.86 # 13731 # 14489 # -1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.493 5_2 - 631 SNF2_N PF00176.18 299 7.8e-23 74.0 0.0 1 1 8.2e-25 1.2e-22 73.5 0.0 34 244 156 359 57 409 0.86 # 444 # 2336 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.411 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/ae9e7efc-db18-49a0-a5bb-948c858084b9 # Target file: checkm_output/bins/pGCA_000582665.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000582665.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ae9e7efc-db18-49a0-a5bb-948c858084b9 checkm_output/bins/pGCA_000582665.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:41:42 2020 # [ok]