# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_16 - 815 AAA_17 PF13207.1 121 0.00026 14.0 1.5 1 2 0.036 2.1 1.4 0.2 44 92 354 402 339 427 0.69 # 10155 # 12599 # 1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.631 1_16 - 815 AAA_17 PF13207.1 121 0.00026 14.0 1.5 2 2 0.00015 0.0088 9.0 0.0 2 20 527 545 526 607 0.85 # 10155 # 12599 # 1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.631 1_32 - 500 Terminase_1 PF03354.10 477 5.8e-09 26.9 0.0 1 1 1.2e-10 7.1e-09 26.6 0.0 1 303 54 345 54 368 0.78 # 20802 # 22301 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.604 1_16 - 815 AAA_29 PF13555.1 62 0.00046 11.9 0.0 1 1 2.4e-05 0.0014 10.4 0.0 25 40 526 541 508 545 0.84 # 10155 # 12599 # 1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.631 1_16 - 815 AAA_33 PF13671.1 143 8.1e-05 14.7 0.0 1 1 4e-06 0.00023 13.2 0.0 1 21 526 546 526 572 0.88 # 10155 # 12599 # 1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.631 1_16 - 815 VirE PF05272.6 198 5.9e-74 239.9 0.0 1 1 1.7e-75 9.9e-74 239.2 0.0 1 197 472 670 472 671 0.93 # 10155 # 12599 # 1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.631 1_16 - 815 ABC_tran PF00005.22 137 0.00055 12.4 0.0 1 1 2.9e-05 0.0017 10.8 0.0 9 34 522 547 517 564 0.86 # 10155 # 12599 # 1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.631 1_16 - 815 AAA_19 PF13245.1 76 5.6e-05 15.1 0.0 1 1 3.5e-06 0.0002 13.3 0.0 11 35 525 549 511 646 0.78 # 10155 # 12599 # 1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.631 1_18 - 451 ResIII PF04851.10 184 2.7e-05 16.2 0.0 1 1 2.9e-06 0.00017 13.6 0.0 2 182 3 161 2 163 0.72 # 13172 # 14524 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_18 - 451 DEAD PF00270.24 169 1.8e-11 36.0 0.0 1 1 5e-13 2.9e-11 35.3 0.0 2 163 7 162 6 169 0.82 # 13172 # 14524 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_16 - 815 NACHT PF05729.7 166 3.6e-05 15.6 0.0 1 1 1.1e-06 6.6e-05 14.7 0.0 2 28 526 552 525 558 0.89 # 10155 # 12599 # 1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.631 1_16 - 815 AAA_25 PF13481.1 194 8.9e-05 14.1 0.1 1 1 6.2e-06 0.00036 12.1 0.0 33 59 524 550 455 570 0.87 # 10155 # 12599 # 1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.631 1_18 - 451 SNF2_N PF00176.18 299 1.7e-22 71.6 0.0 1 1 4.6e-24 2.7e-22 71.0 0.0 33 265 27 264 11 295 0.81 # 13172 # 14524 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_16 - 815 AAA_5 PF07728.9 139 1.7e-05 16.7 0.0 1 1 6.3e-07 3.7e-05 15.6 0.0 2 48 527 574 526 593 0.89 # 10155 # 12599 # 1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.631 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b2960b50-2716-48d0-b478-98ffc284105c # Target file: checkm_output/bins/pGCA_000525655.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000525655.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b2960b50-2716-48d0-b478-98ffc284105c checkm_output/bins/pGCA_000525655.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:41:38 2020 # [ok]