# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_31 - 318 Mg_chelatase PF01078.16 207 0.0013 11.5 0.1 1 2 0.00015 0.012 8.3 0.0 14 65 91 142 81 154 0.80 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 1_31 - 318 Mg_chelatase PF01078.16 207 0.0013 11.5 0.1 2 2 0.037 3 0.5 0.0 109 128 173 192 162 196 0.90 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 2_12 - 315 Mg_chelatase PF01078.16 207 0.0014 11.3 0.0 1 1 3e-05 0.0024 10.6 0.0 18 48 138 168 126 225 0.84 # 9353 # 10297 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_51 - 142 RNA_pol_L_2 PF13656.1 77 0.00046 13.2 0.0 1 2 0.078 13 -1.0 0.0 9 25 37 53 14 61 0.70 # 36191 # 36616 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.244 1_51 - 142 RNA_pol_L_2 PF13656.1 77 0.00046 13.2 0.0 2 2 1e-05 0.0017 11.4 0.0 27 69 73 116 69 119 0.87 # 36191 # 36616 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.244 2_34 - 180 SRP_SPB PF02978.14 104 0.0014 12.5 2.2 1 2 8.4e-05 0.014 9.3 0.5 42 78 19 55 3 64 0.82 # 31864 # 32403 # -1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.235 2_34 - 180 SRP_SPB PF02978.14 104 0.0014 12.5 2.2 2 2 0.01 1.6 2.7 0.0 3 28 109 135 107 168 0.78 # 31864 # 32403 # -1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.235 1_18 - 530 Terminase_6 PF03237.10 384 1.2e-37 123.1 0.6 1 1 9.3e-40 1.5e-37 122.8 0.6 2 383 147 514 146 515 0.92 # 13476 # 15065 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.382 2_12 - 315 IstB_IS21 PF01695.12 178 0.001 12.1 0.0 1 1 1.1e-05 0.0018 11.3 0.0 43 63 138 158 107 163 0.79 # 9353 # 10297 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 2_20 - 52 SSB PF00436.20 104 1.2e-08 28.3 0.0 1 1 8.1e-11 1.3e-08 28.3 0.0 4 38 5 39 2 49 0.88 # 17571 # 17726 # 1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.391 6_1 - 95 Trm56 PF01994.11 121 0.00066 13.0 0.0 1 1 5e-06 0.0008 12.8 0.0 4 48 23 67 21 89 0.87 # 3 # 287 # 1 # ID=6_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.270 1_38 - 400 AAA_2 PF07724.9 171 0.00042 13.8 0.0 1 1 4.3e-06 0.0007 13.1 0.0 6 89 150 227 146 271 0.66 # 25999 # 27198 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.287 1_43 - 620 DUF87 PF01935.12 229 3.4e-07 23.8 0.3 1 1 1.6e-08 1.3e-06 21.9 0.3 12 63 121 170 106 400 0.76 # 29896 # 31755 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320 2_12 - 315 DUF87 PF01935.12 229 0.00019 14.8 0.0 1 1 4.1e-06 0.00033 14.1 0.0 26 45 145 164 122 174 0.90 # 9353 # 10297 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_31 - 318 NB-ARC PF00931.17 287 5.4e-05 15.7 0.0 1 1 6.3e-07 0.0001 14.8 0.0 16 101 96 170 89 280 0.80 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 2_12 - 315 Septin PF00735.13 281 0.00021 13.9 0.0 1 1 2e-06 0.00032 13.3 0.0 6 26 144 164 141 183 0.89 # 9353 # 10297 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_31 - 318 AAA_22 PF13401.1 131 2.6e-27 89.1 0.1 1 1 1.8e-28 7.1e-27 87.7 0.1 3 129 98 211 94 214 0.95 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 1_38 - 400 AAA_22 PF13401.1 131 1.2e-06 22.3 1.3 1 1 8.1e-06 0.00033 14.4 1.3 4 130 147 267 141 268 0.67 # 25999 # 27198 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.287 2_12 - 315 AAA_22 PF13401.1 131 2.6e-06 21.2 0.0 1 1 1.1e-07 4.6e-06 20.4 0.0 4 37 142 186 139 224 0.71 # 9353 # 10297 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 2_4 - 918 AAA_22 PF13401.1 131 0.00039 14.2 0.0 1 1 3.8e-05 0.0015 12.2 0.0 7 37 544 582 542 678 0.82 # 1616 # 4369 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 2_12 - 315 ATP_bind_1 PF03029.12 238 0.00021 14.4 0.0 1 1 2.4e-06 0.00038 13.6 0.0 1 24 147 170 147 175 0.87 # 9353 # 10297 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_31 - 318 AAA_17 PF13207.1 121 7.1e-05 17.2 0.3 1 1 2.3e-06 0.00019 15.9 0.3 3 22 103 122 101 244 0.67 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 1_38 - 400 AAA_17 PF13207.1 121 0.0016 12.9 0.7 1 1 0.00027 0.022 9.2 0.2 2 21 150 169 149 303 0.68 # 25999 # 27198 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.287 2_12 - 315 AAA_21 PF13304.1 303 0.00022 14.8 0.0 1 1 2.4e-06 0.00038 14.0 0.0 2 59 145 183 144 209 0.73 # 9353 # 10297 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_31 - 318 Miro PF08477.8 119 0.00022 15.3 0.0 1 1 7.1e-06 0.00057 14.0 0.0 4 41 104 139 102 208 0.66 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 2_12 - 315 Miro PF08477.8 119 0.00079 13.5 0.1 1 1 1.7e-05 0.0014 12.7 0.1 2 20 145 163 144 236 0.84 # 9353 # 10297 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 2_12 - 315 MobB PF03205.9 140 0.00024 14.4 0.2 1 1 4.2e-06 0.00067 13.0 0.0 3 24 145 166 143 179 0.85 # 9353 # 10297 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 2_23 - 1985 Helicase_C PF00271.26 78 1.5e-07 24.9 0.8 1 2 0.092 15 -0.8 0.0 16 40 1117 1141 1105 1147 0.85 # 19356 # 25310 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.357 2_23 - 1985 Helicase_C PF00271.26 78 1.5e-07 24.9 0.8 2 2 7.5e-09 1.2e-06 21.9 0.1 11 78 1554 1623 1547 1623 0.84 # 19356 # 25310 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.357 10_1 - 186 ArsA_ATPase PF02374.10 305 0.002 10.7 1.2 1 2 4.2e-05 0.0068 9.0 0.2 1 25 1 25 1 33 0.88 # 249 # 806 # 1 # ID=10_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.251 10_1 - 186 ArsA_ATPase PF02374.10 305 0.002 10.7 1.2 2 2 0.03 4.8 -0.4 0.0 151 186 34 71 27 78 0.76 # 249 # 806 # 1 # ID=10_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.251 2_12 - 315 T2SE PF00437.15 272 3.1e-63 206.7 0.0 1 1 4.4e-65 3.5e-63 206.5 0.0 6 269 18 294 13 297 0.92 # 9353 # 10297 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_31 - 318 T2SE PF00437.15 272 2e-05 17.2 0.0 1 1 3.9e-07 3.1e-05 16.5 0.0 102 153 73 124 52 139 0.81 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 1_38 - 400 Zeta_toxin PF06414.7 201 0.00079 12.1 0.0 1 1 7.9e-06 0.0013 11.4 0.0 14 57 145 187 134 221 0.80 # 25999 # 27198 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.287 3_12 - 109 F420_oxidored PF03807.12 96 0.00012 16.1 0.2 1 1 1.1e-06 0.00017 15.6 0.2 19 81 43 104 36 108 0.81 # 6554 # 6880 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.229 1_31 - 318 Arch_ATPase PF01637.13 234 8.5e-07 22.4 0.0 1 1 2.1e-08 3.4e-06 20.5 0.0 11 68 92 144 91 204 0.70 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 1_31 - 318 AAA_16 PF13191.1 185 9.5e-07 22.5 0.2 1 2 5.8e-07 3.1e-05 17.6 0.0 18 47 93 122 76 148 0.81 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 1_31 - 318 AAA_16 PF13191.1 185 9.5e-07 22.5 0.2 2 2 0.024 1.3 2.6 0.2 134 185 156 204 126 204 0.62 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 2_12 - 315 AAA_16 PF13191.1 185 3.2e-05 17.5 0.0 1 1 8.8e-07 4.7e-05 17.0 0.0 19 63 139 186 127 239 0.75 # 9353 # 10297 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 2_4 - 918 AAA_16 PF13191.1 185 0.0013 12.3 0.0 1 1 6e-05 0.0032 11.0 0.0 26 51 543 568 531 585 0.90 # 1616 # 4369 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 2_12 - 315 AAA_23 PF13476.1 202 0.00012 16.0 0.1 1 1 2.6e-06 0.00021 15.2 0.1 22 37 145 160 124 163 0.83 # 9353 # 10297 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_31 - 318 AAA_23 PF13476.1 202 0.00018 15.4 0.9 1 1 6.5e-06 0.00052 13.9 0.1 17 36 90 116 72 117 0.79 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 1_31 - 318 AAA_18 PF13238.1 129 0.001 12.9 0.2 1 1 1.7e-05 0.0028 11.6 0.2 2 22 103 123 103 249 0.83 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 1_31 - 318 AAA_13 PF13166.1 712 0.0004 12.5 0.8 1 2 4.9e-06 0.00079 11.5 0.1 6 32 89 115 84 123 0.85 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 1_31 - 318 AAA_13 PF13166.1 712 0.0004 12.5 0.8 2 2 0.082 13 -2.5 0.0 217 250 206 237 184 241 0.84 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 2_25 - 190 CbiA PF01656.18 195 2.7e-09 30.3 1.1 1 2 9.8e-07 7.9e-05 15.7 0.1 1 24 3 26 3 30 0.93 # 25612 # 26181 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 2_25 - 190 CbiA PF01656.18 195 2.7e-09 30.3 1.1 2 2 3.9e-06 0.00032 13.7 0.1 85 171 46 126 32 150 0.76 # 25612 # 26181 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 10_1 - 186 CbiA PF01656.18 195 2.7e-06 20.5 0.4 1 2 4.8e-07 3.9e-05 16.7 0.1 1 23 3 25 3 27 0.95 # 249 # 806 # 1 # ID=10_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.251 10_1 - 186 CbiA PF01656.18 195 2.7e-06 20.5 0.4 2 2 0.014 1.1 2.1 0.0 110 177 69 129 36 151 0.59 # 249 # 806 # 1 # ID=10_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.251 1_38 - 400 KaiC PF06745.8 227 4.3e-05 16.3 0.0 1 1 1.7e-06 9.3e-05 15.2 0.0 18 116 146 246 134 266 0.84 # 25999 # 27198 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.287 1_31 - 318 KaiC PF06745.8 227 0.00041 13.1 0.0 1 1 1.3e-05 0.00072 12.3 0.0 16 41 96 121 80 148 0.84 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 2_12 - 315 KaiC PF06745.8 227 0.0013 11.4 1.0 1 1 3.4e-05 0.0018 10.9 0.1 11 37 134 160 128 164 0.85 # 9353 # 10297 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_38 - 400 AAA_14 PF13173.1 128 3.9e-07 23.6 0.1 1 1 1.9e-08 7.5e-07 22.7 0.1 2 74 147 228 146 292 0.68 # 25999 # 27198 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.287 1_31 - 318 AAA_14 PF13173.1 128 5e-07 23.3 0.0 1 1 2.4e-08 9.8e-07 22.3 0.0 2 97 99 206 98 241 0.68 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 2_12 - 315 AAA_14 PF13173.1 128 0.0009 12.7 0.0 1 1 4.4e-05 0.0018 11.8 0.0 2 34 142 180 141 254 0.69 # 9353 # 10297 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_53 - 665 AAA_14 PF13173.1 128 0.0048 10.4 5.2 1 3 0.0044 0.18 5.3 0.3 52 87 95 134 54 156 0.66 # 37041 # 39035 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.305 1_53 - 665 AAA_14 PF13173.1 128 0.0048 10.4 5.2 2 3 0.032 1.3 2.5 0.2 30 74 427 472 367 506 0.72 # 37041 # 39035 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.305 1_53 - 665 AAA_14 PF13173.1 128 0.0048 10.4 5.2 3 3 0.03 1.2 2.6 0.0 65 100 613 648 543 656 0.77 # 37041 # 39035 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.305 2_12 - 315 GvpD PF07088.6 484 0.00028 12.8 0.0 1 1 2.2e-06 0.00035 12.5 0.0 8 63 140 200 134 310 0.67 # 9353 # 10297 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 2_12 - 315 AAA_29 PF13555.1 62 2.1e-05 17.6 0.0 1 1 3.5e-07 5.6e-05 16.2 0.0 21 40 140 159 121 165 0.81 # 9353 # 10297 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_38 - 400 AAA PF00004.24 132 2.6e-17 56.9 0.0 1 1 6.1e-19 4.9e-17 56.0 0.0 2 131 151 287 150 288 0.87 # 25999 # 27198 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.287 1_31 - 318 AAA PF00004.24 132 1.6e-05 18.7 0.0 1 1 5.2e-07 4.2e-05 17.3 0.0 2 70 103 182 102 201 0.61 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 1_47 - 268 RNA_pol_Rpb1_5 PF04998.12 277 0.016 8.0 4.3 1 1 0.00013 0.021 7.6 4.3 126 232 84 192 64 220 0.66 # 32994 # 33797 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.228 1_43 - 620 PAPS_reduct PF01507.14 174 0.0012 12.3 0.3 1 1 1.8e-05 0.0029 11.0 0.3 12 70 453 517 451 539 0.79 # 29896 # 31755 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320 6_2 - 453 Val_tRNA-synt_C PF10458.4 66 8.8e-05 16.2 4.7 1 2 0.00075 0.12 6.1 0.4 1 16 257 272 257 278 0.86 # 277 # 1635 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.326 6_2 - 453 Val_tRNA-synt_C PF10458.4 66 8.8e-05 16.2 4.7 2 2 3.8e-05 0.0062 10.3 0.4 3 29 422 448 420 450 0.91 # 277 # 1635 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.326 2_12 - 315 Sigma54_activat PF00158.21 168 0.0013 11.8 0.0 1 1 1.8e-05 0.0028 10.7 0.0 13 43 133 163 125 176 0.81 # 9353 # 10297 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 2_12 - 315 DUF258 PF03193.11 161 0.0006 12.6 0.0 1 1 5.8e-06 0.00093 12.0 0.0 22 57 128 164 112 195 0.85 # 9353 # 10297 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 2_13 - 634 TraG-D_C PF12696.2 128 8.7e-28 90.4 0.0 1 1 2.2e-29 1.8e-27 89.4 0.0 1 127 403 522 403 523 0.89 # 10294 # 12195 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.371 1_43 - 620 TraG-D_C PF12696.2 128 3.4e-14 46.4 0.0 1 1 1.3e-15 1e-13 44.8 0.0 2 127 418 539 417 540 0.84 # 29896 # 31755 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320 2_25 - 190 AAA_31 PF13614.1 157 9.5e-05 15.9 0.1 1 2 4.6e-05 0.0037 10.8 0.0 3 25 3 25 2 29 0.94 # 25612 # 26181 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 2_25 - 190 AAA_31 PF13614.1 157 9.5e-05 15.9 0.1 2 2 0.014 1.2 2.7 0.0 121 151 57 86 33 91 0.85 # 25612 # 26181 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 10_1 - 186 AAA_31 PF13614.1 157 0.00011 15.7 0.8 1 2 2e-05 0.0016 12.0 0.0 3 27 3 27 2 68 0.94 # 249 # 806 # 1 # ID=10_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.251 10_1 - 186 AAA_31 PF13614.1 157 0.00011 15.7 0.8 2 2 0.078 6.3 0.3 0.2 88 111 150 173 96 185 0.46 # 249 # 806 # 1 # ID=10_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.251 1_31 - 318 AAA_33 PF13671.1 143 0.00055 13.4 0.0 1 1 1.4e-05 0.0011 12.4 0.0 3 29 103 130 101 173 0.87 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 1_38 - 400 AAA_33 PF13671.1 143 0.0011 12.4 0.0 1 1 2.2e-05 0.0018 11.8 0.0 2 33 150 215 149 297 0.58 # 25999 # 27198 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.287 2_23 - 1985 Methyltransf_26 PF13659.1 117 6.5e-11 35.9 0.0 1 1 8.6e-13 1.4e-10 34.9 0.0 3 116 345 453 343 454 0.83 # 19356 # 25310 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.357 1_31 - 318 AAA_30 PF13604.1 196 6.4e-10 32.5 0.0 1 1 1.5e-11 1.2e-09 31.6 0.0 12 130 94 207 89 238 0.79 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 2_12 - 315 AAA_30 PF13604.1 196 0.00041 13.5 0.0 1 1 1.1e-05 0.00089 12.4 0.0 2 42 127 166 126 175 0.80 # 9353 # 10297 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 2_12 - 315 FtsK_SpoIIIE PF01580.13 205 2.4e-08 27.3 0.1 1 1 1.1e-09 6.2e-08 25.9 0.0 36 59 135 163 122 166 0.77 # 9353 # 10297 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 2_4 - 918 FtsK_SpoIIIE PF01580.13 205 7.5e-05 15.8 0.0 1 1 2.9e-06 0.00016 14.8 0.0 27 66 518 569 495 575 0.82 # 1616 # 4369 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 3_27 - 787 FtsK_SpoIIIE PF01580.13 205 0.00048 13.2 0.1 1 1 2.4e-05 0.0013 11.8 0.0 34 62 373 401 360 404 0.89 # 17285 # 19645 # 1 # ID=3_27;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.259 2_23 - 1985 MTS PF05175.9 170 0.00088 12.2 0.0 1 1 1.5e-05 0.0025 10.8 0.0 92 144 396 456 338 473 0.75 # 19356 # 25310 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.357 1_41 - 111 Caps_synth_GfcC PF06251.6 229 0.00023 13.9 0.2 1 1 1.7e-06 0.00027 13.7 0.2 12 94 21 102 14 108 0.82 # 28309 # 28641 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.249 1_38 - 400 6PF2K PF01591.13 223 4.2e-05 16.2 0.5 1 2 3.6e-05 0.0058 9.3 0.0 14 88 148 222 136 232 0.84 # 25999 # 27198 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.287 1_38 - 400 6PF2K PF01591.13 223 4.2e-05 16.2 0.5 2 2 0.00086 0.14 4.8 0.1 159 214 343 396 296 398 0.81 # 25999 # 27198 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.287 2_12 - 315 ABC_tran PF00005.22 137 2.4e-06 21.4 0.0 1 1 5.4e-08 4.4e-06 20.6 0.0 8 45 139 176 134 201 0.83 # 9353 # 10297 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_31 - 318 ABC_tran PF00005.22 137 0.0004 14.3 0.0 1 2 8.7e-05 0.007 10.3 0.0 8 29 96 117 90 127 0.87 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 1_31 - 318 ABC_tran PF00005.22 137 0.0004 14.3 0.0 2 2 0.048 3.9 1.4 0.0 118 135 162 179 157 181 0.89 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 1_31 - 318 ATP-synt_ab PF00006.20 215 0.0015 11.6 0.0 1 1 1.2e-05 0.002 11.2 0.0 18 63 102 291 99 317 0.67 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 2_23 - 1985 Eco57I PF07669.6 106 6.4e-13 42.6 0.2 1 1 3.7e-14 6e-12 39.5 0.1 2 103 402 502 401 505 0.86 # 19356 # 25310 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.357 1_31 - 318 AAA_19 PF13245.1 76 0.00019 14.7 0.0 1 1 2.7e-06 0.00043 13.6 0.0 2 29 91 117 91 141 0.84 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 2_4 - 918 AAA_10 PF12846.2 304 8.1e-44 143.8 0.4 1 1 3.3e-45 1.3e-43 143.1 0.4 2 303 542 842 541 843 0.91 # 1616 # 4369 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 3_27 - 787 AAA_10 PF12846.2 304 1.5e-29 96.9 1.0 1 1 6.5e-31 2.6e-29 96.1 1.0 1 294 377 730 377 739 0.86 # 17285 # 19645 # 1 # ID=3_27;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.259 1_43 - 620 AAA_10 PF12846.2 304 5.8e-19 62.1 0.0 1 1 2e-20 8e-19 61.7 0.0 2 289 132 484 131 498 0.83 # 29896 # 31755 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320 2_12 - 315 AAA_10 PF12846.2 304 7.3e-06 19.1 0.0 1 1 2.8e-07 1.1e-05 18.5 0.0 2 24 143 165 142 181 0.82 # 9353 # 10297 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_31 - 318 ResIII PF04851.10 184 0.0015 12.0 0.3 1 2 3.3e-05 0.0053 10.1 0.2 22 56 90 129 49 190 0.78 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 1_31 - 318 ResIII PF04851.10 184 0.0015 12.0 0.3 2 2 0.069 11 -0.7 0.0 138 160 162 184 132 206 0.71 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 3_27 - 787 Zot PF05707.7 193 3.6e-05 16.9 1.0 1 2 0.044 7.1 -0.4 0.0 4 16 381 393 380 402 0.83 # 17285 # 19645 # 1 # ID=3_27;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.259 3_27 - 787 Zot PF05707.7 193 3.6e-05 16.9 1.0 2 2 1.6e-06 0.00025 14.1 0.2 80 136 661 714 592 763 0.84 # 17285 # 19645 # 1 # ID=3_27;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.259 1_31 - 318 Viral_helicase1 PF01443.13 234 6.1e-07 22.7 0.0 1 1 1.2e-08 9.8e-07 22.0 0.0 2 79 103 184 102 197 0.81 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 1_38 - 400 Viral_helicase1 PF01443.13 234 0.00071 12.7 0.0 1 1 1.4e-05 0.0011 12.1 0.0 4 72 153 220 150 224 0.72 # 25999 # 27198 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.287 1_31 - 318 DUF2075 PF09848.4 352 0.0001 14.9 0.1 1 1 1.4e-06 0.00023 13.7 0.1 2 95 100 182 99 239 0.70 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 2_12 - 315 DEAD PF00270.24 169 8.3e-05 15.7 0.0 1 1 1.8e-06 0.00015 14.9 0.0 11 31 139 159 129 227 0.78 # 9353 # 10297 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 2_23 - 1985 DEAD PF00270.24 169 0.00011 15.3 0.1 1 1 6.1e-05 0.0049 9.9 0.1 3 144 1041 1245 1039 1287 0.63 # 19356 # 25310 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.357 1_38 - 400 DUF815 PF05673.8 250 9.6e-06 18.2 0.0 1 1 1.6e-07 2.5e-05 16.8 0.0 44 116 138 219 101 234 0.80 # 25999 # 27198 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.287 1_43 - 620 DUF853 PF05872.7 504 0.00065 11.6 0.0 1 1 6.2e-06 0.00099 11.0 0.0 5 59 115 169 111 218 0.90 # 29896 # 31755 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320 2_13 - 634 TrwB_AAD_bind PF10412.4 386 1.1e-18 60.5 0.0 1 2 1e-05 0.00042 12.5 0.0 54 123 162 240 122 249 0.74 # 10294 # 12195 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.371 2_13 - 634 TrwB_AAD_bind PF10412.4 386 1.1e-18 60.5 0.0 2 2 7.5e-16 3e-14 45.9 0.0 185 369 343 525 304 538 0.79 # 10294 # 12195 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.371 1_43 - 620 TrwB_AAD_bind PF10412.4 386 9.8e-14 44.2 0.3 1 3 1.4e-08 5.6e-07 22.0 0.0 9 57 125 171 119 198 0.88 # 29896 # 31755 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320 1_43 - 620 TrwB_AAD_bind PF10412.4 386 9.8e-14 44.2 0.3 2 3 0.013 0.52 2.4 0.1 103 168 224 289 214 310 0.85 # 29896 # 31755 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320 1_43 - 620 TrwB_AAD_bind PF10412.4 386 9.8e-14 44.2 0.3 3 3 7.5e-07 3e-05 16.3 0.0 145 373 318 546 310 554 0.76 # 29896 # 31755 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320 2_12 - 315 TrwB_AAD_bind PF10412.4 386 0.00021 13.6 0.0 1 1 7.7e-06 0.00031 13.0 0.0 13 39 140 166 129 179 0.82 # 9353 # 10297 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_31 - 318 TrwB_AAD_bind PF10412.4 386 0.0011 11.2 0.0 1 1 4.3e-05 0.0017 10.5 0.0 4 37 87 121 84 125 0.74 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 1_31 - 318 AAA_11 PF13086.1 236 7.8e-05 15.9 0.0 1 1 8.3e-07 0.00013 15.1 0.0 9 75 91 146 85 222 0.81 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 2_13 - 634 T4SS-DNA_transf PF02534.9 469 1.3e-105 347.2 0.0 1 1 1.2e-107 1.9e-105 346.6 0.0 5 460 93 557 83 565 0.85 # 10294 # 12195 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.371 5_2 - 268 NAD_binding_5 PF07994.7 295 0.0023 11.0 6.0 1 1 2.3e-05 0.0036 10.3 6.0 65 132 182 248 122 265 0.73 # 2172 # 2975 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.250 3_7 - 254 MethyltransfD12 PF02086.10 260 1.2e-30 100.4 4.0 1 1 1.2e-32 2e-30 99.6 4.0 1 259 12 236 12 237 0.80 # 3202 # 3963 # 1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.361 2_12 - 315 Pox_A32 PF04665.7 241 3.3e-05 16.8 1.5 1 2 5.6e-07 9.1e-05 15.4 0.0 14 35 143 164 134 175 0.86 # 9353 # 10297 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 2_12 - 315 Pox_A32 PF04665.7 241 3.3e-05 16.8 1.5 2 2 0.033 5.4 -0.2 0.6 157 195 265 303 254 308 0.78 # 9353 # 10297 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 2_12 - 315 RNA_helicase PF00910.17 107 0.00034 14.4 0.0 1 1 5.2e-06 0.00083 13.1 0.0 2 20 146 164 145 193 0.86 # 9353 # 10297 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 2_12 - 315 UPF0079 PF02367.12 123 4.6e-05 16.6 0.0 1 1 5.2e-07 8.4e-05 15.8 0.0 5 38 132 165 129 175 0.85 # 9353 # 10297 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_31 - 318 AAA_24 PF13479.1 213 3.9e-05 16.9 0.0 1 1 7.8e-07 6.3e-05 16.2 0.0 6 30 102 130 98 190 0.73 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 2_12 - 315 AAA_24 PF13479.1 213 9.5e-05 15.6 0.3 1 1 5.1e-06 0.00041 13.5 0.0 4 24 143 164 110 182 0.91 # 9353 # 10297 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_31 - 318 UvrD-helicase PF00580.16 315 0.00026 13.9 0.1 1 1 4e-06 0.00064 12.6 0.1 6 33 93 119 88 123 0.79 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 2_12 - 315 NACHT PF05729.7 166 0.00017 14.8 0.0 1 1 1.7e-06 0.00028 14.1 0.0 3 22 145 164 143 168 0.90 # 9353 # 10297 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_31 - 318 AAA_25 PF13481.1 194 0.00085 12.3 0.0 1 1 2.3e-05 0.0018 11.2 0.0 31 51 97 117 68 122 0.84 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 1_38 - 400 AAA_25 PF13481.1 194 0.0024 10.8 0.4 1 2 0.0015 0.12 5.3 0.2 36 49 150 163 144 171 0.87 # 25999 # 27198 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.287 1_38 - 400 AAA_25 PF13481.1 194 0.0024 10.8 0.4 2 2 0.0058 0.46 3.4 0.0 123 175 190 244 167 249 0.79 # 25999 # 27198 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.287 2_23 - 1985 SNF2_N PF00176.18 299 6.8e-18 58.0 0.5 1 1 1.1e-19 1.8e-17 56.6 0.0 25 201 1052 1311 1037 1337 0.80 # 19356 # 25310 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.357 1_38 - 400 AAA_5 PF07728.9 139 1.4e-06 21.7 0.0 1 1 5.1e-08 4.1e-06 20.2 0.0 2 100 150 252 149 278 0.77 # 25999 # 27198 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.287 1_31 - 318 AAA_5 PF07728.9 139 0.0002 14.7 0.0 1 1 7.5e-06 0.0006 13.1 0.0 3 98 103 203 101 220 0.68 # 19755 # 20708 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.390 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/5ff815fa-bb31-4439-b824-2454201aab45 # Target file: checkm_output/bins/pGCA_000512745.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000512745.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/5ff815fa-bb31-4439-b824-2454201aab45 checkm_output/bins/pGCA_000512745.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:41:33 2020 # [ok]