# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 235 Methyltransf_12 PF08242.7 99 5.5e-09 28.2 0.0 1 1 2.3e-10 9.7e-09 27.4 0.0 1 98 43 136 43 137 0.79 # 4953 # 5657 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=15bp;gc_cont=0.305 1_2 - 403 MipZ PF09140.6 261 6.7e-08 23.5 0.4 1 2 6.2e-06 0.00027 11.8 0.3 3 40 118 155 116 162 0.91 # 1297 # 2505 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=10bp;gc_cont=0.359 1_2 - 403 MipZ PF09140.6 261 6.7e-08 23.5 0.4 2 2 2.7e-05 0.0012 9.7 0.0 70 135 216 281 197 289 0.83 # 1297 # 2505 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=10bp;gc_cont=0.359 1_2 - 403 YhjQ PF06564.7 244 6.4e-05 14.1 0.0 1 1 1.7e-05 0.00074 10.6 0.0 4 150 118 277 116 285 0.64 # 1297 # 2505 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=10bp;gc_cont=0.359 1_5 - 235 Methyltransf_18 PF12847.2 112 1.9e-08 26.6 0.0 1 1 7.7e-10 3.3e-08 25.9 0.0 5 109 42 139 40 142 0.77 # 4953 # 5657 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=15bp;gc_cont=0.305 1_27 - 1972 UvrD_C_2 PF13538.1 104 4.2e-10 31.5 0.0 1 1 4.7e-11 2e-09 29.3 0.0 4 103 794 896 791 897 0.77 # 26027 # 31942 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.399 1_15 - 876 DUF87 PF01935.12 229 0.00019 13.0 0.0 1 1 8.2e-06 0.00035 12.1 0.0 29 68 500 538 498 690 0.77 # 11391 # 14018 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.444 1_26 - 612 AAA_22 PF13401.1 131 0.00021 13.2 0.0 1 1 2.8e-05 0.00061 11.7 0.0 5 31 183 209 179 245 0.86 # 24176 # 26011 # 1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.408 1_27 - 1972 AAA_22 PF13401.1 131 0.0012 10.7 7.6 1 1 1.6e-05 0.00035 12.4 0.7 5 125 466 573 462 579 0.75 # 26027 # 31942 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.399 1_5 - 235 Methyltransf_PK PF05891.7 218 5.3e-07 20.8 0.0 1 1 1.8e-08 7.8e-07 20.3 0.0 53 160 36 140 17 152 0.82 # 4953 # 5657 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=15bp;gc_cont=0.305 1_5 - 235 Methyltransf_11 PF08241.7 95 6e-13 40.9 0.0 1 1 2.3e-14 9.7e-13 40.2 0.0 1 95 43 139 43 139 0.97 # 4953 # 5657 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=15bp;gc_cont=0.305 1_26 - 612 MobB PF03205.9 140 8.4e-05 14.0 0.1 1 1 3.9e-06 0.00017 13.0 0.1 3 34 185 216 183 220 0.91 # 24176 # 26011 # 1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.408 1_2 - 403 ArsA_ATPase PF02374.10 305 4.3e-05 14.3 0.4 1 2 1.5e-05 0.00064 10.5 0.5 9 38 124 153 117 158 0.93 # 1297 # 2505 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=10bp;gc_cont=0.359 1_2 - 403 ArsA_ATPase PF02374.10 305 4.3e-05 14.3 0.4 2 2 0.019 0.81 0.3 0.0 122 136 238 254 229 267 0.70 # 1297 # 2505 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=10bp;gc_cont=0.359 1_27 - 1972 PhoH PF02562.11 205 2e-06 18.9 1.6 1 2 0.00025 0.011 6.7 0.1 4 59 448 506 447 518 0.66 # 26027 # 31942 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.399 1_27 - 1972 PhoH PF02562.11 205 2e-06 18.9 1.6 2 2 1.6e-05 0.00069 10.6 0.2 117 199 534 620 533 626 0.75 # 26027 # 31942 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.399 1_26 - 612 Arch_ATPase PF01637.13 234 0.00014 13.3 0.0 1 1 7.1e-06 0.00031 12.2 0.0 22 60 184 221 176 314 0.74 # 24176 # 26011 # 1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.408 1_26 - 612 AAA_16 PF13191.1 185 9.3e-06 17.4 0.0 1 1 1.4e-06 3e-05 15.7 0.0 21 56 179 214 174 239 0.84 # 24176 # 26011 # 1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.408 1_27 - 1972 AAA_16 PF13191.1 185 0.0016 10.2 3.3 1 1 7e-05 0.0015 10.2 0.3 28 63 469 503 455 666 0.85 # 26027 # 31942 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.399 1_27 - 1972 AAA_18 PF13238.1 129 0.0005 12.1 1.5 1 1 6.7e-05 0.0029 9.7 0.0 2 42 469 522 469 563 0.73 # 26027 # 31942 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.399 1_2 - 403 CbiA PF01656.18 195 5.9e-34 108.8 0.1 1 1 4.4e-35 9.6e-34 108.2 0.1 1 194 118 346 118 347 0.79 # 1297 # 2505 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=10bp;gc_cont=0.359 1_26 - 612 CbiA PF01656.18 195 0.00037 11.6 0.0 1 1 3.3e-05 0.00071 10.7 0.0 9 37 192 220 185 308 0.83 # 24176 # 26011 # 1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.408 1_5 - 235 Methyltransf_25 PF13649.1 101 9.3e-12 37.0 0.0 1 1 3.5e-13 1.5e-11 36.4 0.0 1 101 42 135 42 135 0.89 # 4953 # 5657 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=15bp;gc_cont=0.305 1_26 - 612 TraG-D_C PF12696.2 128 8.4e-21 65.9 0.0 1 1 3.7e-22 1.6e-20 65.0 0.0 1 126 414 536 414 538 0.85 # 24176 # 26011 # 1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.408 1_2 - 403 AAA_31 PF13614.1 157 4.8e-15 47.5 0.0 1 1 2e-15 8.6e-14 43.5 0.0 3 150 118 276 117 280 0.86 # 1297 # 2505 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=10bp;gc_cont=0.359 1_5 - 235 Methyltransf_26 PF13659.1 117 1.2e-06 20.3 0.0 1 1 4.6e-08 2e-06 19.6 0.0 4 87 42 118 40 153 0.75 # 4953 # 5657 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=15bp;gc_cont=0.305 1_27 - 1972 AAA_30 PF13604.1 196 1.3e-44 143.8 0.1 1 1 1.4e-45 2.9e-44 142.7 0.1 2 190 449 633 448 639 0.94 # 26027 # 31942 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.399 1_26 - 612 AAA_30 PF13604.1 196 0.00015 13.1 0.0 1 1 1.2e-05 0.00026 12.3 0.0 18 51 182 215 177 218 0.89 # 24176 # 26011 # 1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.408 1_5 - 235 TehB PF03848.9 192 6e-08 23.8 0.3 1 1 2e-09 8.7e-08 23.2 0.3 34 124 42 129 27 149 0.78 # 4953 # 5657 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=15bp;gc_cont=0.305 1_26 - 612 FtsK_SpoIIIE PF01580.13 205 0.00014 13.0 0.0 1 1 5.9e-06 0.00025 12.2 0.0 39 62 180 206 154 216 0.81 # 24176 # 26011 # 1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.408 1_5 - 235 MTS PF05175.9 170 2.2e-07 22.1 0.0 1 1 7.6e-09 3.3e-07 21.5 0.0 34 140 41 141 18 155 0.67 # 4953 # 5657 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=15bp;gc_cont=0.305 1_27 - 1972 AAA_19 PF13245.1 76 1.1e-05 16.9 0.1 1 2 6.5e-06 0.00028 12.4 0.0 14 65 469 514 456 527 0.81 # 26027 # 31942 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.399 1_27 - 1972 AAA_19 PF13245.1 76 1.1e-05 16.9 0.1 2 2 0.033 1.4 0.5 0.0 30 72 643 686 641 689 0.74 # 26027 # 31942 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.399 1_27 - 1972 Helicase_RecD PF05127.9 177 0.00014 13.2 2.3 1 2 0.00015 0.0064 7.8 0.3 122 152 469 499 446 516 0.78 # 26027 # 31942 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.399 1_27 - 1972 Helicase_RecD PF05127.9 177 0.00014 13.2 2.3 2 2 0.012 0.5 1.7 0.1 27 84 657 717 643 724 0.67 # 26027 # 31942 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.399 1_15 - 876 AAA_10 PF12846.2 304 2.6e-47 153.3 0.1 1 1 2.5e-48 5.4e-47 152.3 0.1 2 292 495 783 494 791 0.82 # 11391 # 14018 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.444 1_26 - 612 AAA_10 PF12846.2 304 2.1e-17 55.1 0.0 1 1 3.2e-18 6.9e-17 53.5 0.0 3 300 184 494 183 497 0.74 # 24176 # 26011 # 1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.408 1_5 - 235 NodS PF05401.6 201 3.9e-07 21.3 0.0 1 1 1.4e-08 5.9e-07 20.7 0.0 42 153 37 149 31 183 0.85 # 4953 # 5657 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=15bp;gc_cont=0.305 1_5 - 235 Methyltransf_31 PF13847.1 152 5.1e-10 30.9 0.2 1 1 1.7e-11 7.3e-10 30.3 0.2 3 112 38 143 36 190 0.73 # 4953 # 5657 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=15bp;gc_cont=0.305 1_27 - 1972 Viral_helicase1 PF01443.13 234 1.8e-05 16.0 0.1 1 1 1.4e-06 6.1e-05 14.3 0.1 3 101 470 577 468 583 0.73 # 26027 # 31942 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.399 1_26 - 612 DUF815 PF05673.8 250 0.00013 12.7 0.0 1 1 5.2e-06 0.00023 11.8 0.0 50 86 179 215 152 225 0.86 # 24176 # 26011 # 1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.408 1_5 - 235 PrmA PF06325.8 295 9.5e-06 16.6 0.0 1 1 2.8e-07 1.2e-05 16.2 0.0 160 204 37 80 20 143 0.83 # 4953 # 5657 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=15bp;gc_cont=0.305 1_26 - 612 TrwB_AAD_bind PF10412.4 386 1.4e-155 509.3 0.0 1 1 4.2e-157 1.8e-155 508.9 0.0 2 386 169 557 168 557 0.99 # 24176 # 26011 # 1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.408 1_26 - 612 AAA_11 PF13086.1 236 0.00031 12.0 0.0 1 1 2.2e-05 0.00046 11.5 0.0 18 75 183 266 153 359 0.70 # 24176 # 26011 # 1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.408 1_27 - 1972 AAA_11 PF13086.1 236 0.00058 11.1 0.0 1 2 2.7e-05 0.00058 11.1 0.0 3 72 450 512 448 522 0.82 # 26027 # 31942 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.399 1_27 - 1972 AAA_11 PF13086.1 236 0.00058 11.1 0.0 2 2 0.00088 0.019 6.2 0.0 194 232 538 579 522 583 0.75 # 26027 # 31942 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.399 1_26 - 612 T4SS-DNA_transf PF02534.9 469 1.3e-17 55.2 0.0 1 1 8.7e-18 3.7e-16 50.3 0.0 176 439 285 551 139 554 0.80 # 24176 # 26011 # 1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.408 1_26 - 612 ArgK PF03308.11 267 0.00025 11.6 0.0 1 1 9.2e-06 0.0004 10.9 0.0 31 62 184 215 164 219 0.89 # 24176 # 26011 # 1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.408 1_26 - 612 PIF1 PF05970.9 364 0.00041 11.0 0.0 1 1 1.6e-05 0.00068 10.3 0.0 19 55 179 215 171 221 0.90 # 24176 # 26011 # 1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.408 1_5 - 235 Methyltransf_23 PF13489.1 161 9.2e-12 36.7 0.0 1 1 2.9e-13 1.2e-11 36.2 0.0 14 158 30 200 22 203 0.82 # 4953 # 5657 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=15bp;gc_cont=0.305 1_27 - 1972 NACHT PF05729.7 166 4.7e-05 14.8 0.7 1 1 8.5e-06 0.00018 12.9 0.7 4 127 469 571 466 604 0.71 # 26027 # 31942 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.399 1_26 - 612 NACHT PF05729.7 166 0.00016 13.0 0.1 1 1 3.1e-05 0.00068 11.0 0.0 3 28 185 210 183 216 0.91 # 24176 # 26011 # 1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.408 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/8730f018-a804-4f5f-885d-0724913c8f53 # Target file: checkm_output/bins/pGCA_000512355.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000512355.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/8730f018-a804-4f5f-885d-0724913c8f53 checkm_output/bins/pGCA_000512355.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:41:33 2020 # [ok]