# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_55 - 277 Seryl_tRNA_N PF02403.17 108 0.0028 10.8 8.4 1 2 0.02 2.3 1.4 0.1 78 98 37 57 25 78 0.66 # 54256 # 55086 # -1 # ID=1_55;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.308 1_55 - 277 Seryl_tRNA_N PF02403.17 108 0.0028 10.8 8.4 2 2 4.3e-05 0.0049 10.0 4.4 25 97 200 273 181 276 0.67 # 54256 # 55086 # -1 # ID=1_55;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.308 2_14 - 455 Terminase_6 PF03237.10 384 5.4e-50 163.3 0.0 1 1 5.8e-52 6.7e-50 163.0 0.0 1 381 67 432 67 435 0.94 # 11571 # 12935 # 1 # ID=2_14;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.287 2_11 - 251 MipZ PF09140.6 261 4.7e-11 35.3 0.1 1 1 2.4e-11 2.8e-09 29.5 0.1 2 128 8 153 7 165 0.66 # 8705 # 9457 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.274 2_11 - 251 DUF87 PF01935.12 229 0.00067 12.6 4.7 1 1 5.4e-05 0.0062 9.4 4.7 33 210 17 227 15 249 0.49 # 8705 # 9457 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.274 2_11 - 251 ArsA_ATPase PF02374.10 305 5.8e-07 21.9 2.5 1 1 1.6e-07 1.8e-05 16.9 2.5 7 44 13 49 6 138 0.59 # 8705 # 9457 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.274 2_14 - 455 PhoH PF02562.11 205 0.00024 13.4 0.0 1 1 1.7e-05 0.0019 10.5 0.0 5 146 47 192 45 207 0.58 # 11571 # 12935 # 1 # ID=2_14;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.287 2_11 - 251 VirC1 PF07015.6 231 8.6e-06 18.0 4.9 1 3 1.8e-06 0.00021 13.5 0.1 2 40 7 44 6 59 0.79 # 8705 # 9457 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.274 2_11 - 251 VirC1 PF07015.6 231 8.6e-06 18.0 4.9 2 3 0.0029 0.33 3.0 0.2 99 118 80 99 72 117 0.81 # 8705 # 9457 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.274 2_11 - 251 VirC1 PF07015.6 231 8.6e-06 18.0 4.9 3 3 0.0034 0.39 2.8 0.1 83 134 123 173 101 216 0.76 # 8705 # 9457 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.274 2_11 - 251 Fer4_NifH PF00142.13 273 1.6e-05 17.3 0.0 1 1 2.9e-07 3.3e-05 16.2 0.0 8 49 15 55 8 84 0.82 # 8705 # 9457 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.274 2_11 - 251 CbiA PF01656.18 195 3e-33 107.9 0.2 1 1 3.3e-35 3.8e-33 107.6 0.2 1 168 9 196 9 220 0.84 # 8705 # 9457 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.274 1_68 - 362 KaiC PF06745.8 227 0.0057 8.8 5.0 1 2 0.048 5.4 -0.9 0.1 84 117 40 73 28 89 0.80 # 69318 # 70403 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.323 1_68 - 362 KaiC PF06745.8 227 0.0057 8.8 5.0 2 2 1.6e-05 0.0018 10.4 0.6 68 124 221 283 205 299 0.79 # 69318 # 70403 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.323 1_42 - 281 TniB PF05621.6 302 0.00066 11.5 0.1 1 1 7.9e-06 0.0009 11.1 0.1 88 173 143 230 125 249 0.81 # 38428 # 39270 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 1_25 - 320 POT1 PF02765.12 146 0.00014 14.9 0.0 1 1 2.3e-06 0.00026 14.0 0.0 56 103 95 141 74 166 0.87 # 19619 # 20578 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.327 2_11 - 251 AAA_31 PF13614.1 157 8.8e-16 51.3 0.5 1 1 1.3e-17 1.5e-15 50.6 0.5 1 152 7 157 7 162 0.84 # 8705 # 9457 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.274 1_60 - 271 RHSP PF07999.6 439 0.00021 13.0 1.4 1 2 0.0042 0.48 1.9 0.1 271 310 27 66 19 77 0.79 # 59321 # 60133 # -1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_60 - 271 RHSP PF07999.6 439 0.00021 13.0 1.4 2 2 1.3e-05 0.0015 10.2 0.1 290 357 122 190 99 248 0.79 # 59321 # 60133 # -1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_27 - 316 dTMP_synthase PF02593.9 218 0.00063 12.2 0.2 1 1 1.3e-05 0.0015 11.0 0.1 8 78 224 290 217 311 0.82 # 22395 # 23342 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.320 4_2 - 350 UvrC_HhH_N PF08459.6 155 0.00045 12.9 0.2 1 2 0.00038 0.043 6.4 0.0 45 101 25 81 21 90 0.86 # 1990 # 3039 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 4_2 - 350 UvrC_HhH_N PF08459.6 155 0.00045 12.9 0.2 2 2 0.0021 0.24 4.0 0.1 24 50 270 296 253 306 0.83 # 1990 # 3039 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 2_14 - 455 Plug PF07715.10 108 0.00093 12.6 0.0 1 1 2e-05 0.0022 11.4 0.0 32 101 142 229 130 231 0.87 # 11571 # 12935 # 1 # ID=2_14;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.287 2_6 - 369 RNA_helicase PF00910.17 107 0.00049 13.4 0.6 1 2 0.045 5.2 0.4 0.1 50 81 9 39 3 55 0.78 # 4366 # 5472 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.276 2_6 - 369 RNA_helicase PF00910.17 107 0.00049 13.4 0.6 2 2 4.5e-05 0.0051 10.1 0.0 29 64 151 186 112 220 0.84 # 4366 # 5472 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.276 2_14 - 455 AAA_28 PF13521.1 163 0.00086 12.4 0.1 1 2 0.00046 0.052 6.6 0.0 1 19 65 83 65 110 0.90 # 11571 # 12935 # 1 # ID=2_14;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.287 2_14 - 455 AAA_28 PF13521.1 163 0.00086 12.4 0.1 2 2 0.0041 0.47 3.5 0.0 68 95 188 215 165 260 0.81 # 11571 # 12935 # 1 # ID=2_14;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.287 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/c7be71e8-8254-4a36-9613-5875fed26caf # Target file: checkm_output/bins/pGCA_000512145.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000512145.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c7be71e8-8254-4a36-9613-5875fed26caf checkm_output/bins/pGCA_000512145.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:41:32 2020 # [ok]