# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 172 Seryl_tRNA_N PF02403.17 108 0.00069 9.3 8.4 1 2 0.062 0.62 -0.2 0.1 37 44 20 27 5 51 0.47 # 940 # 1455 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.349 1_2 - 172 Seryl_tRNA_N PF02403.17 108 0.00069 9.3 8.4 2 2 3.9e-05 0.00039 10.2 5.0 23 88 91 160 65 165 0.79 # 940 # 1455 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.349 1_4 - 574 PRK PF00485.13 194 0.00023 10.4 1.7 1 1 2.2e-05 0.00022 10.5 0.1 2 26 360 384 359 409 0.82 # 2062 # 3783 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_4 - 574 AAA_17 PF13207.1 121 1.9e-06 18.4 0.0 1 1 4.4e-07 4.4e-06 17.2 0.0 2 32 360 402 359 484 0.73 # 2062 # 3783 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_4 - 574 MobB PF03205.9 140 0.00011 11.6 0.8 1 1 3.2e-05 0.00032 10.1 0.2 2 18 359 375 358 388 0.84 # 2062 # 3783 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_4 - 574 SMC_N PF02463.14 220 3.8e-09 25.7 0.5 1 2 0.00018 0.0018 7.2 0.2 26 44 359 377 341 386 0.80 # 2062 # 3783 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_4 - 574 SMC_N PF02463.14 220 3.8e-09 25.7 0.5 2 2 1.9e-07 1.9e-06 16.9 0.0 109 208 386 537 374 545 0.82 # 2062 # 3783 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_4 - 574 AAA_16 PF13191.1 185 8.2e-05 12.3 0.0 1 1 1.3e-05 0.00013 11.6 0.0 24 52 357 391 344 540 0.71 # 2062 # 3783 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_4 - 574 AAA_23 PF13476.1 202 0.00024 11.1 9.9 1 2 0.043 0.43 0.5 0.0 135 186 168 219 38 233 0.72 # 2062 # 3783 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_4 - 574 AAA_23 PF13476.1 202 0.00024 11.1 9.9 2 2 3.9e-05 0.00039 10.4 6.7 21 43 359 381 331 571 0.64 # 2062 # 3783 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_4 - 574 AAA_18 PF13238.1 129 2.1e-05 14.5 0.3 1 1 7e-06 7e-05 12.8 0.0 1 23 360 397 360 461 0.70 # 2062 # 3783 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_4 - 574 AAA_14 PF13173.1 128 9.6e-06 15.2 0.2 1 2 1.5e-05 0.00015 11.4 0.0 3 48 358 403 356 426 0.74 # 2062 # 3783 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_4 - 574 AAA_14 PF13173.1 128 9.6e-06 15.2 0.2 2 2 0.029 0.29 0.7 0.0 61 74 487 500 464 538 0.66 # 2062 # 3783 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_4 - 574 AAA_29 PF13555.1 62 1.3e-06 17.6 0.1 1 1 3e-07 3e-06 16.5 0.1 13 40 348 374 345 378 0.85 # 2062 # 3783 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_4 - 574 AAA PF00004.24 132 6.7e-06 16.0 0.0 1 1 6.8e-06 6.8e-05 12.8 0.0 3 93 362 512 360 538 0.73 # 2062 # 3783 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_4 - 574 DUF258 PF03193.11 161 1.5e-05 13.9 0.0 1 1 3e-06 3e-05 12.9 0.0 17 59 338 381 323 410 0.79 # 2062 # 3783 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_4 - 574 AAA_30 PF13604.1 196 9.2e-05 11.7 0.0 1 1 1.5e-05 0.00015 11.0 0.0 21 50 360 389 342 396 0.86 # 2062 # 3783 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_4 - 574 ABC_tran PF00005.22 137 7.5e-32 100.2 0.1 1 1 1.7e-32 1.7e-31 99.0 0.0 1 137 347 498 347 498 0.87 # 2062 # 3783 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_4 - 574 ATP-synt_ab PF00006.20 215 0.00014 11.0 0.8 1 1 2.3e-05 0.00023 10.3 0.2 7 35 349 377 341 398 0.85 # 2062 # 3783 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_4 - 574 AAA_19 PF13245.1 76 0.00012 11.5 0.0 1 1 2.6e-05 0.00026 10.4 0.0 12 36 360 382 352 400 0.82 # 2062 # 3783 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_4 - 574 DEAD PF00270.24 169 3.7e-05 12.9 0.0 1 1 8.6e-06 8.6e-05 11.7 0.0 14 70 357 506 343 546 0.82 # 2062 # 3783 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_4 - 574 AAA_5 PF07728.9 139 8.5e-05 12.0 0.0 1 2 0.00039 0.0039 6.6 0.0 4 23 362 381 359 393 0.85 # 2062 # 3783 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 1_4 - 574 AAA_5 PF07728.9 139 8.5e-05 12.0 0.0 2 2 0.0071 0.071 2.5 0.0 59 81 469 503 415 543 0.79 # 2062 # 3783 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.260 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/20a1b9f3-d756-4cc1-a041-18061119470a # Target file: checkm_output/bins/pGCA_000479375.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000479375.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/20a1b9f3-d756-4cc1-a041-18061119470a checkm_output/bins/pGCA_000479375.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:41:27 2020 # [ok]