# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_3 - 253 MipZ PF09140.6 261 1.7e-10 32.1 0.6 1 2 1.9e-07 8.2e-06 16.7 0.1 3 59 4 60 2 69 0.88 # 2698 # 3456 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=15bp;gc_cont=0.292 3_3 - 253 MipZ PF09140.6 261 1.7e-10 32.1 0.6 2 2 1.2e-06 5.1e-05 14.1 0.1 35 129 64 153 58 159 0.83 # 2698 # 3456 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=15bp;gc_cont=0.292 3_3 - 253 YhjQ PF06564.7 244 3e-05 15.2 0.0 1 1 1.1e-06 4.8e-05 14.5 0.0 1 150 1 155 1 179 0.77 # 2698 # 3456 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=15bp;gc_cont=0.292 3_3 - 253 SRP54 PF00448.17 196 0.00031 11.9 4.8 1 2 2.4e-05 0.001 10.2 0.7 11 42 12 43 2 51 0.87 # 2698 # 3456 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=15bp;gc_cont=0.292 3_3 - 253 SRP54 PF00448.17 196 0.00031 11.9 4.8 2 2 0.0051 0.22 2.6 0.0 46 92 82 131 69 135 0.67 # 2698 # 3456 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=15bp;gc_cont=0.292 3_3 - 253 ArsA_ATPase PF02374.10 305 1.2e-10 32.6 0.9 1 1 5.9e-12 2.6e-10 31.5 0.9 9 141 10 137 2 222 0.72 # 2698 # 3456 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=15bp;gc_cont=0.292 4_1 - 590 NAD_binding_8 PF13450.1 68 3.7e-08 25.1 0.1 1 1 1.6e-09 6.7e-08 24.3 0.1 1 66 27 95 27 97 0.75 # 320 # 2089 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 3_3 - 253 VirC1 PF07015.6 231 2.2e-09 28.4 2.2 1 2 4.5e-06 0.00019 12.2 0.0 1 74 1 75 1 112 0.79 # 2698 # 3456 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=15bp;gc_cont=0.292 3_3 - 253 VirC1 PF07015.6 231 2.2e-09 28.4 2.2 2 2 3.2e-07 1.4e-05 16.0 0.5 82 165 121 202 104 215 0.88 # 2698 # 3456 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=15bp;gc_cont=0.292 3_3 - 253 Fer4_NifH PF00142.13 273 1.2e-06 19.5 4.2 1 1 7.4e-07 3.2e-05 14.9 4.2 8 53 10 55 3 252 0.79 # 2698 # 3456 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=15bp;gc_cont=0.292 3_3 - 253 CbiA PF01656.18 195 4.8e-33 105.9 1.9 1 1 1.4e-34 5.8e-33 105.6 1.9 1 180 4 212 4 231 0.78 # 2698 # 3456 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=15bp;gc_cont=0.292 4_1 - 590 FAD_binding_2 PF00890.19 417 9.1e-07 19.6 0.2 1 2 1.1e-05 0.00047 10.7 0.2 4 23 27 46 25 69 0.90 # 320 # 2089 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 4_1 - 590 FAD_binding_2 PF00890.19 417 9.1e-07 19.6 0.2 2 2 0.00016 0.0069 6.9 0.0 126 182 212 272 143 314 0.72 # 320 # 2089 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 4_1 - 590 Strep_67kDa_ant PF06100.6 500 1.3e-249 820.2 0.2 1 1 3.7e-251 1.6e-249 820.0 0.2 1 500 21 519 21 519 1.00 # 320 # 2089 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 2_4 - 230 rRNA_methylase PF06962.7 140 0.00021 12.7 0.0 1 1 9.2e-06 0.00039 11.8 0.0 12 88 134 209 130 211 0.93 # 3931 # 4620 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 4_1 - 590 Pyr_redox_3 PF13738.1 203 0.0002 13.2 3.1 1 2 5.8e-06 0.00025 12.8 0.2 2 42 27 70 26 80 0.87 # 320 # 2089 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 4_1 - 590 Pyr_redox_3 PF13738.1 203 0.0002 13.2 3.1 2 2 0.093 4 -0.9 0.0 69 109 180 227 156 281 0.58 # 320 # 2089 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 3_3 - 253 AAA_31 PF13614.1 157 5.7e-12 37.5 2.0 1 1 1.7e-13 7.5e-12 37.2 0.4 1 155 2 159 2 161 0.79 # 2698 # 3456 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=15bp;gc_cont=0.292 4_1 - 590 DAO PF01266.19 358 3.2e-05 14.6 0.0 1 2 1.9e-05 0.0008 10.0 0.1 4 36 27 63 24 91 0.92 # 320 # 2089 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 4_1 - 590 DAO PF01266.19 358 3.2e-05 14.6 0.0 2 2 0.0042 0.18 2.3 0.0 147 201 227 292 220 356 0.83 # 320 # 2089 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f996ac54-f66a-4460-8ed8-d2a5205753ab # Target file: checkm_output/bins/pGCA_000478255.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000478255.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f996ac54-f66a-4460-8ed8-d2a5205753ab checkm_output/bins/pGCA_000478255.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:41:24 2020 # [ok]