# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_2 - 245 Methyltransf_12 PF08242.7 99 5e-05 13.0 0.2 1 1 1.9e-05 0.00014 11.6 0.0 2 56 36 88 35 114 0.83 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_2 - 245 RrnaAD PF00398.15 262 2.9e-76 245.0 4.4 1 1 4.6e-77 3.2e-76 244.9 4.4 1 262 1 244 1 244 0.97 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_2 - 245 Methyltransf_18 PF12847.2 112 1.5e-08 24.4 0.0 1 1 3e-09 2.1e-08 23.9 0.0 3 66 32 91 30 151 0.76 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_2 - 245 Methyltransf_11 PF08241.7 95 4e-07 19.7 0.0 1 1 1.1e-07 7.7e-07 18.8 0.0 2 60 36 94 35 99 0.91 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_2 - 245 Methyltransf_25 PF13649.1 101 4.8e-05 12.9 0.0 1 1 1.5e-05 0.0001 11.9 0.0 1 69 34 96 34 121 0.83 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_2 - 245 PCMT PF01135.14 210 2.5e-07 19.5 0.0 1 1 1e-07 7.3e-07 18.0 0.0 53 126 10 80 3 86 0.86 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_2 - 245 Methyltransf_26 PF13659.1 117 1.1e-09 27.6 0.0 1 1 2e-10 1.4e-09 27.2 0.0 2 81 32 105 31 148 0.90 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_2 - 245 MTS PF05175.9 170 2.2e-06 16.3 0.0 1 1 4.8e-07 3.4e-06 15.7 0.0 25 113 24 109 14 125 0.83 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_4 - 332 Ribosomal_L11 PF00298.14 69 4e-05 13.0 1.7 1 2 2e-05 0.00014 11.2 0.1 16 43 23 51 16 63 0.90 # 2036 # 3031 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.294 1_4 - 332 Ribosomal_L11 PF00298.14 69 4e-05 13.0 1.7 2 2 0.078 0.55 -0.3 0.1 30 57 211 238 206 239 0.77 # 2036 # 3031 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.294 2_2 - 245 NodS PF05401.6 201 2.1e-06 16.4 0.0 1 1 4.8e-07 3.4e-06 15.7 0.0 44 107 31 94 9 115 0.84 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_2 - 245 Methyltransf_31 PF13847.1 152 1.2e-06 17.3 2.8 1 1 2.9e-07 2.1e-06 16.6 2.6 2 76 29 98 28 225 0.74 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_2 - 245 DOT1 PF08123.8 205 2.2e-06 16.2 1.3 1 2 1.9e-06 1.3e-05 13.7 0.0 29 91 17 77 13 116 0.83 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_2 - 245 DOT1 PF08123.8 205 2.2e-06 16.2 1.3 2 2 0.016 0.11 0.9 0.6 78 133 180 229 169 236 0.57 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_2 - 245 TIGR00755 TIGR00755 256 1.6e-48 154.0 1.2 1 1 2.9e-49 2.1e-48 153.6 1.2 6 254 7 237 3 239 0.88 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_2 - 245 Methyltransf_23 PF13489.1 161 3.6e-06 15.9 0.0 1 1 1.5e-06 1e-05 14.5 0.0 11 67 17 78 8 119 0.71 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_2 - 245 Methyltransf_4 PF02390.12 197 1.2e-06 16.8 0.3 1 2 1.7e-07 1.2e-06 16.8 0.3 20 97 31 101 4 104 0.77 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 2_2 - 245 Methyltransf_4 PF02390.12 197 1.2e-06 16.8 0.3 2 2 0.093 0.65 -1.9 0.1 136 159 187 207 168 229 0.62 # 1650 # 2384 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/cdbdf0b0-b077-4c0d-b5ca-11ec487af99e # Target file: checkm_output/bins/pGCA_000463055.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000463055.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/cdbdf0b0-b077-4c0d-b5ca-11ec487af99e checkm_output/bins/pGCA_000463055.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:41:20 2020 # [ok]