# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_37 - 344 Mg_chelatase PF01078.16 207 1.2e-07 23.0 0.1 1 1 4.3e-09 2.1e-07 22.2 0.1 1 49 150 198 150 248 0.88 # 31638 # 32669 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.595 1_28 - 245 Methyltransf_28 PF02636.12 252 9.1e-05 13.8 0.1 1 1 2.4e-06 0.00012 13.4 0.1 32 117 82 188 58 218 0.70 # 22206 # 22940 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.479 1_37 - 344 IstB_IS21 PF01695.12 178 0.00025 12.3 0.2 1 1 1.8e-05 0.00088 10.6 0.2 44 62 168 186 142 192 0.86 # 31638 # 32669 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.595 1_14 - 217 MipZ PF09140.6 261 8.7e-20 62.7 0.4 1 1 3.8e-19 9e-18 56.1 0.4 2 147 4 129 3 141 0.85 # 8851 # 9501 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_23 - 217 MipZ PF09140.6 261 2.4e-12 38.3 0.0 1 2 5.6e-09 1.3e-07 22.7 0.0 2 53 2 52 1 65 0.85 # 15600 # 16250 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.550 1_23 - 217 MipZ PF09140.6 261 2.4e-12 38.3 0.0 2 2 3.5e-06 8.3e-05 13.6 0.0 87 143 67 123 61 135 0.90 # 15600 # 16250 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.550 1_23 - 217 YhjQ PF06564.7 244 7.2e-07 20.6 0.9 1 2 1.9e-06 9.1e-05 13.7 0.3 3 41 2 40 1 43 0.94 # 15600 # 16250 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.550 1_23 - 217 YhjQ PF06564.7 244 7.2e-07 20.6 0.9 2 2 0.0011 0.053 4.7 0.0 98 145 61 106 50 115 0.89 # 15600 # 16250 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.550 1_29 - 202 SSB PF00436.20 104 5e-39 124.3 0.1 1 1 1.3e-40 6.4e-39 124.0 0.1 1 100 5 107 5 111 0.96 # 23246 # 23851 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_37 - 344 AAA_22 PF13401.1 131 9.9e-05 14.4 0.0 1 1 7.4e-06 0.00018 13.6 0.0 4 35 171 202 166 256 0.76 # 31638 # 32669 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.595 1_23 - 217 AAA_22 PF13401.1 131 0.0004 12.4 0.0 1 1 4.6e-05 0.0011 11.0 0.0 14 69 11 69 1 101 0.74 # 15600 # 16250 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.550 1_37 - 344 ATP_bind_1 PF03029.12 238 0.00012 13.6 0.0 1 1 4.1e-06 0.0002 12.8 0.0 1 27 176 201 176 205 0.84 # 31638 # 32669 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.595 1_14 - 217 SRP54 PF00448.17 196 1.1e-10 33.1 0.2 1 1 3.4e-12 1.6e-10 32.6 0.2 4 98 4 95 2 127 0.82 # 8851 # 9501 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_14 - 217 AAA_17 PF13207.1 121 1.1e-05 18.2 0.0 1 1 6.3e-07 1.5e-05 17.7 0.0 2 77 5 90 4 201 0.72 # 8851 # 9501 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_37 - 344 AAA_17 PF13207.1 121 1.2e-05 18.0 0.0 1 1 1.7e-06 4e-05 16.3 0.0 2 22 174 194 173 247 0.83 # 31638 # 32669 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.595 1_14 - 217 MobB PF03205.9 140 0.00037 12.1 0.6 1 1 1.5e-05 0.00072 11.2 0.5 2 42 4 43 3 89 0.83 # 8851 # 9501 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_14 - 217 ArsA_ATPase PF02374.10 305 1.7e-08 25.7 1.0 1 2 2.1e-09 5e-08 24.1 0.1 3 64 4 70 2 74 0.81 # 8851 # 9501 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_14 - 217 ArsA_ATPase PF02374.10 305 1.7e-08 25.7 1.0 2 2 0.043 1 0.1 0.1 124 135 78 89 68 92 0.82 # 8851 # 9501 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_23 - 217 ArsA_ATPase PF02374.10 305 1.6e-06 19.2 0.0 1 1 9.9e-08 2.4e-06 18.6 0.0 4 45 3 45 1 59 0.88 # 15600 # 16250 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.550 1_37 - 344 T2SE PF00437.15 272 3.8e-42 135.9 0.0 1 1 9.5e-44 4.5e-42 135.6 0.0 7 268 24 316 19 320 0.96 # 31638 # 32669 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.595 1_37 - 344 Zeta_toxin PF06414.7 201 6.9e-05 13.9 0.0 1 1 2.2e-06 0.00011 13.3 0.0 14 63 169 221 161 239 0.83 # 31638 # 32669 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.595 1_14 - 217 VirC1 PF07015.6 231 7.6e-12 36.6 0.0 1 1 5.5e-13 1.3e-11 35.8 0.0 4 198 5 199 2 212 0.73 # 8851 # 9501 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_23 - 217 VirC1 PF07015.6 231 0.00023 12.1 0.0 1 1 1.1e-05 0.00027 11.9 0.0 9 152 8 146 1 193 0.80 # 15600 # 16250 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.550 1_23 - 217 Fer4_NifH PF00142.13 273 3.2e-05 15.0 0.0 1 1 1.8e-06 4.3e-05 14.6 0.0 8 42 9 43 2 91 0.89 # 15600 # 16250 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.550 1_14 - 217 Fer4_NifH PF00142.13 273 3.8e-05 14.8 0.5 1 1 3.1e-06 7.4e-05 13.8 0.2 8 40 11 43 3 56 0.86 # 8851 # 9501 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_37 - 344 AAA_18 PF13238.1 129 2.3e-05 16.6 0.0 1 1 1e-06 4.9e-05 15.5 0.0 1 22 174 195 174 225 0.73 # 31638 # 32669 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.595 1_14 - 217 CbiA PF01656.18 195 2e-22 71.4 0.0 1 1 1.6e-23 2.6e-22 71.0 0.0 1 145 5 131 5 163 0.85 # 8851 # 9501 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_23 - 217 CbiA PF01656.18 195 1e-16 52.8 0.0 1 1 1.1e-17 1.8e-16 51.9 0.0 5 142 7 126 3 168 0.79 # 15600 # 16250 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.550 1_28 - 245 CbiA PF01656.18 195 1.9e-09 29.0 1.3 1 2 1.1e-05 0.00018 12.8 0.3 1 20 8 27 8 28 0.94 # 22206 # 22940 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.479 1_28 - 245 CbiA PF01656.18 195 1.9e-09 29.0 1.3 2 2 2e-06 3.2e-05 15.3 0.0 77 167 48 150 35 180 0.80 # 22206 # 22940 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.479 1_37 - 344 AAA_29 PF13555.1 62 0.00026 12.4 0.0 1 1 1.5e-05 0.00074 11.0 0.0 9 38 160 186 156 194 0.78 # 31638 # 32669 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.595 1_37 - 344 AAA PF00004.24 132 0.00041 12.4 0.0 1 1 1.5e-05 0.00073 11.6 0.0 1 35 174 208 174 255 0.82 # 31638 # 32669 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.595 1_33 - 551 TraG-D_C PF12696.2 128 2.2e-29 93.8 0.0 1 1 8e-31 3.8e-29 93.0 0.0 2 127 309 431 308 432 0.88 # 26787 # 28439 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.561 1_14 - 217 AAA_31 PF13614.1 157 2.2e-10 32.5 0.1 1 2 7.2e-09 1.7e-07 23.1 0.0 2 44 4 46 3 69 0.88 # 8851 # 9501 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_14 - 217 AAA_31 PF13614.1 157 2.2e-10 32.5 0.1 2 2 0.00048 0.012 7.5 0.0 108 133 71 96 58 111 0.79 # 8851 # 9501 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_23 - 217 AAA_31 PF13614.1 157 1.3e-09 30.0 0.0 1 2 4e-08 9.7e-07 20.7 0.0 8 42 8 42 2 53 0.90 # 15600 # 16250 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.550 1_23 - 217 AAA_31 PF13614.1 157 1.3e-09 30.0 0.0 2 2 0.00061 0.015 7.1 0.0 107 150 68 110 64 116 0.84 # 15600 # 16250 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.550 1_23 - 217 AAA_33 PF13671.1 143 0.00011 14.0 0.1 1 1 4.2e-06 0.0002 13.1 0.1 9 98 11 107 2 160 0.76 # 15600 # 16250 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.550 1_14 - 217 KTI12 PF08433.5 270 0.00018 12.6 0.0 1 1 5.9e-06 0.00029 11.9 0.0 11 52 13 54 1 90 0.69 # 8851 # 9501 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_37 - 344 FtsK_SpoIIIE PF01580.13 205 1.4e-06 19.7 0.0 1 1 5e-08 2.4e-06 19.0 0.0 29 59 162 192 138 194 0.79 # 31638 # 32669 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.595 1_40 - 263 AAA_27 PF13514.1 1111 5.8e-06 16.0 0.5 1 1 1.4e-07 6.9e-06 15.8 0.5 419 520 4 109 1 129 0.86 # 34835 # 35623 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.549 1_37 - 344 ABC_tran PF00005.22 137 0.0005 12.3 0.0 1 1 2e-05 0.00096 11.3 0.0 6 62 166 220 163 283 0.80 # 31638 # 32669 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.595 1_37 - 344 AAA_19 PF13245.1 76 0.00017 13.3 0.0 1 1 8.6e-06 0.00041 12.0 0.0 4 25 168 186 165 195 0.76 # 31638 # 32669 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.595 1_45 - 825 AAA_10 PF12846.2 304 4.4e-20 64.1 0.0 1 1 4.6e-21 7.3e-20 63.4 0.0 2 297 400 687 399 691 0.87 # 38060 # 40534 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.578 1_23 - 217 AAA_10 PF12846.2 304 5.2e-06 17.9 0.0 1 1 9e-07 1.4e-05 16.4 0.0 11 50 11 52 9 95 0.87 # 15600 # 16250 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.550 1_37 - 344 AAA_10 PF12846.2 304 0.00013 13.3 0.0 1 1 1.4e-05 0.00022 12.5 0.0 2 34 172 204 171 227 0.85 # 31638 # 32669 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.595 1_37 - 344 Viral_helicase1 PF01443.13 234 0.00042 11.7 0.0 1 1 1.8e-05 0.00085 10.7 0.0 1 30 174 200 174 221 0.78 # 31638 # 32669 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.595 1_33 - 551 TrwB_AAD_bind PF10412.4 386 4.4e-23 73.3 0.0 1 2 0.00053 0.025 5.0 0.0 87 128 121 161 65 169 0.80 # 26787 # 28439 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.561 1_33 - 551 TrwB_AAD_bind PF10412.4 386 4.4e-23 73.3 0.0 2 2 1.2e-22 5.7e-21 66.3 0.0 197 383 250 448 198 451 0.85 # 26787 # 28439 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.561 1_33 - 551 T4SS-DNA_transf PF02534.9 469 1.2e-79 259.8 0.0 1 2 1.4e-80 6.9e-79 257.3 0.0 31 457 23 468 6 471 0.84 # 26787 # 28439 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.561 1_33 - 551 T4SS-DNA_transf PF02534.9 469 1.2e-79 259.8 0.0 2 2 0.032 1.5 -1.0 0.0 86 123 486 524 482 534 0.72 # 26787 # 28439 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.561 1_37 - 344 Pox_A32 PF04665.7 241 0.00017 12.8 0.0 1 1 5.5e-06 0.00027 12.1 0.0 14 46 172 204 162 237 0.73 # 31638 # 32669 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.595 1_37 - 344 AAA_24 PF13479.1 213 0.00018 13.0 0.1 1 1 8.7e-06 0.00042 11.8 0.0 4 23 172 191 169 197 0.87 # 31638 # 32669 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.595 1_2 - 171 TIGR00922 TIGR00922 172 2.9e-05 15.5 0.0 1 1 7.6e-07 3.7e-05 15.2 0.0 50 104 46 100 5 119 0.74 # 364 # 876 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.511 1_23 - 217 AAA_25 PF13481.1 194 0.00031 12.0 1.0 1 1 4.2e-05 0.002 9.4 0.9 42 95 10 53 2 202 0.62 # 15600 # 16250 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.550 1_37 - 344 AAA_28 PF13521.1 163 5.8e-05 15.0 0.0 1 1 6.6e-06 0.00032 12.6 0.0 1 20 173 192 173 211 0.77 # 31638 # 32669 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.595 1_23 - 217 APS_kinase PF01583.15 157 0.00026 12.6 0.2 1 2 1.8e-05 0.00089 10.8 0.1 5 39 3 38 1 42 0.85 # 15600 # 16250 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.550 1_23 - 217 APS_kinase PF01583.15 157 0.00026 12.6 0.2 2 2 0.092 4.4 -1.2 0.0 73 98 96 121 90 138 0.76 # 15600 # 16250 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.550 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/c1e27913-b25a-4b10-9ee4-c5579553d7e0 # Target file: checkm_output/bins/pGCA_000452705.3.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000452705.3.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c1e27913-b25a-4b10-9ee4-c5579553d7e0 checkm_output/bins/pGCA_000452705.3.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:41:22 2020 # [ok]