# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 508 ATP_bind_3 PF01171.15 182 2.5e-05 15.0 0.0 1 1 1.5e-06 4.4e-05 14.2 0.0 1 77 212 284 212 372 0.67 # 3835 # 5358 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_22 - 222 Seryl_tRNA_N PF02403.17 108 0.023 6.0 12.7 1 2 7.1e-05 0.0021 9.3 2.2 39 68 61 90 33 122 0.71 # 24219 # 24884 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_22 - 222 Seryl_tRNA_N PF02403.17 108 0.023 6.0 12.7 2 2 0.017 0.51 1.7 0.8 56 92 113 149 106 157 0.73 # 24219 # 24884 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_19 - 254 MipZ PF09140.6 261 1e-11 35.5 0.1 1 1 5.9e-12 1.8e-10 31.5 0.1 2 128 8 154 7 183 0.68 # 21241 # 22002 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_19 - 254 YhjQ PF06564.7 244 0.00011 12.7 0.0 1 1 5.8e-06 0.00017 12.1 0.0 3 142 8 149 6 160 0.64 # 21241 # 22002 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_19 - 254 ATP_bind_1 PF03029.12 238 0.0001 13.1 0.0 1 1 6.6e-06 0.0002 12.1 0.0 6 43 17 54 15 132 0.83 # 21241 # 22002 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_19 - 254 SRP54 PF00448.17 196 0.00028 11.6 0.1 1 2 0.00017 0.0052 7.4 0.0 11 39 17 45 6 93 0.86 # 21241 # 22002 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_19 - 254 SRP54 PF00448.17 196 0.00028 11.6 0.1 2 2 0.0065 0.2 2.3 0.0 80 92 121 133 87 143 0.75 # 21241 # 22002 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_4 - 508 NAD_synthase PF02540.12 242 7.4e-14 42.4 0.5 1 2 4.7e-12 1.4e-10 31.6 0.1 4 93 196 284 193 295 0.85 # 3835 # 5358 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_4 - 508 NAD_synthase PF02540.12 242 7.4e-14 42.4 0.5 2 2 5e-05 0.0015 8.6 0.0 148 177 355 384 353 416 0.93 # 3835 # 5358 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_19 - 254 ArsA_ATPase PF02374.10 305 1.4e-13 41.7 0.2 1 1 1.5e-14 4.5e-13 40.0 0.2 6 137 12 135 6 144 0.66 # 21241 # 22002 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_19 - 254 VirC1 PF07015.6 231 9.2e-07 19.3 0.0 1 2 4.1e-07 1.2e-05 15.6 0.0 2 40 7 45 6 82 0.90 # 21241 # 22002 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_19 - 254 VirC1 PF07015.6 231 9.2e-07 19.3 0.0 2 2 0.0069 0.21 1.8 0.0 83 113 124 154 102 186 0.79 # 21241 # 22002 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_4 - 508 TIGR02432 TIGR02432 189 9.1e-06 16.6 0.0 1 1 6.1e-07 1.8e-05 15.6 0.0 1 156 212 366 212 376 0.65 # 3835 # 5358 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_19 - 254 Fer4_NifH PF00142.13 273 1.1e-08 25.8 0.2 1 2 1.4e-09 4.1e-08 23.9 0.0 8 52 15 59 9 95 0.77 # 21241 # 22002 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_19 - 254 Fer4_NifH PF00142.13 273 1.1e-08 25.8 0.2 2 2 0.043 1.3 -0.7 0.0 193 244 197 246 184 251 0.66 # 21241 # 22002 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_4 - 508 QueC PF06508.8 210 6e-07 20.1 0.0 1 1 1.6e-07 4.9e-06 17.1 0.0 2 176 213 376 212 383 0.80 # 3835 # 5358 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_19 - 254 CbiA PF01656.18 195 2.7e-35 112.7 0.1 1 1 1.1e-36 3.2e-35 112.5 0.1 1 191 9 218 9 222 0.83 # 21241 # 22002 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_4 - 508 PAPS_reduct PF01507.14 174 9.4e-09 26.5 0.0 1 1 5.3e-10 1.6e-08 25.8 0.0 2 160 213 382 212 396 0.66 # 3835 # 5358 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_4 - 508 Asn_synthase PF00733.16 255 5.8e-05 13.8 0.0 1 2 0.06 1.8 -0.9 0.0 19 27 42 50 34 55 0.86 # 3835 # 5358 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_4 - 508 Asn_synthase PF00733.16 255 5.8e-05 13.8 0.0 2 2 7.8e-06 0.00023 11.8 0.0 9 73 203 266 194 360 0.82 # 3835 # 5358 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_19 - 254 AAA_31 PF13614.1 157 2.8e-14 44.5 0.6 1 1 1.3e-15 4e-14 44.0 0.6 1 148 7 154 7 163 0.83 # 21241 # 22002 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_19 - 254 AAA_10 PF12846.2 304 3.1e-05 14.7 0.3 1 1 2.7e-06 8.1e-05 13.3 0.3 11 89 17 95 15 201 0.75 # 21241 # 22002 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/75da4ca7-9654-4d49-8c87-c18039d7c0c7 # Target file: checkm_output/bins/pGCA_000445425.4.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000445425.4.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/75da4ca7-9654-4d49-8c87-c18039d7c0c7 checkm_output/bins/pGCA_000445425.4.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:41:20 2020 # [ok]