# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_46 - 997 IstB_IS21 PF01695.12 178 2.9e-06 20.1 0.1 1 1 1.5e-07 1e-05 18.3 0.1 44 85 278 320 267 336 0.80 # 36510 # 39500 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.689 2_26 - 250 IstB_IS21 PF01695.12 178 3.4e-05 16.6 0.1 1 1 1.2e-06 7.9e-05 15.4 0.1 45 67 26 48 18 50 0.90 # 13553 # 14302 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.676 1_53 - 385 MipZ PF09140.6 261 4.4e-12 38.9 0.0 1 2 3e-09 4e-07 22.6 0.1 2 40 117 155 116 170 0.92 # 46102 # 47256 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.640 1_53 - 385 MipZ PF09140.6 261 4.4e-12 38.9 0.0 2 2 1.3e-06 0.00017 14.0 0.0 81 111 224 254 203 266 0.77 # 46102 # 47256 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.640 1_53 - 385 YhjQ PF06564.7 244 1.1e-08 28.0 0.0 1 1 2.9e-10 3.9e-08 26.2 0.0 10 134 124 258 118 287 0.77 # 46102 # 47256 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.640 1_30 - 338 CoaE PF01121.15 180 0.00025 13.8 0.0 1 1 3.3e-06 0.00044 13.0 0.0 5 40 154 190 150 197 0.84 # 23640 # 24653 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.675 2_26 - 250 DUF87 PF01935.12 229 5.5e-05 16.4 0.0 1 1 6.5e-07 8.7e-05 15.7 0.0 24 44 29 49 27 62 0.89 # 13553 # 14302 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.676 1_46 - 997 NB-ARC PF00931.17 287 7.1e-12 38.0 0.0 1 1 1.6e-13 1.1e-11 37.4 0.0 24 147 286 405 276 461 0.82 # 36510 # 39500 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.689 1_4 - 373 NB-ARC PF00931.17 287 9.3e-05 14.6 0.0 1 1 1.9e-06 0.00013 14.2 0.0 20 60 140 178 121 191 0.76 # 1327 # 2445 # -1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.698 1_43 - 740 AAA_22 PF13401.1 131 2e-07 24.6 0.0 1 1 1.3e-08 4.2e-07 23.5 0.0 3 127 355 490 351 494 0.78 # 33183 # 35402 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.716 1_46 - 997 AAA_22 PF13401.1 131 6.1e-07 23.0 0.3 1 1 1.3e-07 4.4e-06 20.2 0.0 8 96 285 370 278 373 0.88 # 36510 # 39500 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.689 2_26 - 250 AAA_22 PF13401.1 131 6e-05 16.5 0.2 1 1 7.6e-06 0.00025 14.5 0.2 3 35 27 59 22 170 0.54 # 13553 # 14302 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.676 1_76 - 286 AAA_22 PF13401.1 131 0.00078 12.9 0.5 1 1 0.00011 0.0038 10.7 0.2 3 24 30 51 27 223 0.89 # 67678 # 68535 # -1 # ID=1_76;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.693 1_76 - 286 ATP_bind_1 PF03029.12 238 0.00049 13.0 0.0 1 1 6.2e-06 0.00082 12.2 0.0 2 45 37 80 36 83 0.91 # 67678 # 68535 # -1 # ID=1_76;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.693 1_76 - 286 SRP54 PF00448.17 196 0.00021 14.1 0.0 1 1 2.9e-06 0.00039 13.2 0.0 3 32 33 62 31 72 0.75 # 67678 # 68535 # -1 # ID=1_76;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.693 1_76 - 286 AAA_15 PF13175.1 415 0.00028 13.2 0.0 1 2 0.00021 0.027 6.7 0.0 24 45 33 54 14 63 0.82 # 67678 # 68535 # -1 # ID=1_76;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.693 1_76 - 286 AAA_15 PF13175.1 415 0.00028 13.2 0.0 2 2 0.001 0.13 4.5 0.0 372 411 156 191 149 192 0.83 # 67678 # 68535 # -1 # ID=1_76;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.693 1_30 - 338 AAA_17 PF13207.1 121 2.5e-06 21.7 0.0 1 1 2.5e-07 1.1e-05 19.6 0.0 1 42 151 190 151 329 0.84 # 23640 # 24653 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.675 1_29 - 190 AAA_17 PF13207.1 121 8.9e-06 19.9 0.1 1 1 6e-07 2.6e-05 18.3 0.1 2 64 7 89 7 181 0.54 # 23074 # 23643 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.702 1_76 - 286 AAA_17 PF13207.1 121 0.0011 13.1 0.1 1 1 6.8e-05 0.003 11.7 0.1 1 40 33 77 33 256 0.80 # 67678 # 68535 # -1 # ID=1_76;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.693 1_76 - 286 AAA_21 PF13304.1 303 9.2e-14 45.3 0.0 1 2 1.3e-07 1.7e-05 18.2 0.0 2 23 34 55 33 72 0.84 # 67678 # 68535 # -1 # ID=1_76;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.693 1_76 - 286 AAA_21 PF13304.1 303 9.2e-14 45.3 0.0 2 2 1e-09 1.3e-07 25.1 0.0 234 298 133 191 122 194 0.92 # 67678 # 68535 # -1 # ID=1_76;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.693 1_94 - 885 Helicase_C PF00271.26 78 1.2e-08 28.1 0.0 1 1 2.3e-10 3.1e-08 26.8 0.0 11 77 377 444 368 445 0.89 # 81811 # 84465 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.699 1_53 - 385 ArsA_ATPase PF02374.10 305 6.4e-12 38.4 0.4 1 2 8.9e-13 5.9e-11 35.2 0.1 2 44 117 159 116 171 0.88 # 46102 # 47256 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.640 1_53 - 385 ArsA_ATPase PF02374.10 305 6.4e-12 38.4 0.4 2 2 0.02 1.3 1.2 0.0 123 136 236 251 167 256 0.80 # 46102 # 47256 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.640 1_46 - 997 ArsA_ATPase PF02374.10 305 0.0012 11.2 0.2 1 1 3e-05 0.002 10.5 0.2 6 34 286 314 284 322 0.87 # 36510 # 39500 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.689 1_53 - 385 Methyltransf_24 PF13578.1 106 0.0001 16.4 0.0 1 1 2.5e-06 0.00033 14.8 0.0 15 80 137 252 125 280 0.61 # 46102 # 47256 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.640 1_30 - 338 Zeta_toxin PF06414.7 201 2.1e-05 17.0 0.0 1 1 3.2e-07 4.2e-05 16.0 0.0 14 37 147 170 135 182 0.86 # 23640 # 24653 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.675 1_28 - 280 F420_oxidored PF03807.12 96 1.8e-06 21.7 0.3 1 1 9.2e-08 1.2e-05 19.0 0.1 2 82 6 83 5 93 0.76 # 22227 # 23066 # 1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_76 - 286 SMC_N PF02463.14 220 0.00041 12.9 0.0 1 1 1.8e-05 0.0024 10.4 0.0 25 197 32 190 21 209 0.58 # 67678 # 68535 # -1 # ID=1_76;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.693 1_72 - 691 VirC1 PF07015.6 231 0.00035 13.0 0.1 1 1 4.1e-06 0.00054 12.4 0.1 4 41 247 284 244 347 0.92 # 63294 # 65366 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.694 1_53 - 385 Fer4_NifH PF00142.13 273 6.4e-07 22.1 0.1 1 2 7.5e-07 9.9e-05 14.9 0.0 8 43 124 159 116 170 0.85 # 46102 # 47256 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.640 1_53 - 385 Fer4_NifH PF00142.13 273 6.4e-07 22.1 0.1 2 2 0.00072 0.096 5.1 0.0 175 246 309 383 270 384 0.75 # 46102 # 47256 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.640 1_61 - 1278 AAA_16 PF13191.1 185 6.1e-08 26.1 0.1 1 1 2.3e-09 6.1e-08 26.1 0.1 2 71 135 209 135 316 0.73 # 52919 # 56752 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.713 1_76 - 286 AAA_16 PF13191.1 185 3.8e-06 20.3 3.2 1 1 5e-07 1.3e-05 18.5 1.0 13 163 21 196 17 206 0.55 # 67678 # 68535 # -1 # ID=1_76;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.693 1_30 - 338 AAA_16 PF13191.1 185 0.00023 14.5 0.0 1 1 3.8e-05 0.001 12.4 0.0 9 47 130 171 128 209 0.83 # 23640 # 24653 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.675 2_26 - 250 AAA_16 PF13191.1 185 0.0006 13.1 0.1 1 1 3.9e-05 0.001 12.4 0.1 22 41 26 51 12 180 0.76 # 13553 # 14302 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.676 1_43 - 740 AAA_16 PF13191.1 185 0.002 11.4 2.2 1 1 0.00016 0.0042 10.4 0.4 18 60 350 392 345 408 0.81 # 33183 # 35402 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.716 1_76 - 286 AAA_23 PF13476.1 202 3.3e-05 17.6 0.0 1 1 4.5e-07 6e-05 16.7 0.0 15 38 24 50 15 53 0.81 # 67678 # 68535 # -1 # ID=1_76;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.693 1_29 - 190 AAA_18 PF13238.1 129 2.2e-06 21.3 0.0 1 1 5.5e-07 3.6e-05 17.4 0.0 1 115 7 134 7 151 0.57 # 23074 # 23643 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.702 1_30 - 338 AAA_18 PF13238.1 129 0.001 12.7 0.1 1 1 4.1e-05 0.0027 11.3 0.1 1 21 152 172 152 283 0.83 # 23640 # 24653 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.675 1_17 - 462 AAA_13 PF13166.1 712 0.00096 10.9 0.5 1 1 2.1e-05 0.0014 10.4 0.5 355 453 187 284 111 305 0.59 # 13283 # 14668 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.673 1_18 - 501 AAA_13 PF13166.1 712 0.03 6.0 5.4 1 2 0.0027 0.18 3.4 5.2 283 443 223 383 219 396 0.54 # 14769 # 16271 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.676 1_18 - 501 AAA_13 PF13166.1 712 0.03 6.0 5.4 2 2 0.0049 0.32 2.6 1.3 86 145 340 399 328 416 0.78 # 14769 # 16271 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.676 1_53 - 385 CbiA PF01656.18 195 1.8e-28 92.5 0.0 1 1 5.7e-30 3.8e-28 91.5 0.0 1 185 118 348 118 358 0.75 # 46102 # 47256 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.640 1_72 - 691 CbiA PF01656.18 195 0.0021 10.8 2.6 1 1 0.00022 0.014 8.0 2.6 5 35 251 281 245 416 0.66 # 63294 # 65366 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.694 1_28 - 280 Rossmann-like PF10727.4 127 0.0012 11.9 1.4 1 1 1.2e-05 0.0016 11.5 0.7 12 91 5 84 1 115 0.79 # 22227 # 23066 # 1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_76 - 286 AAA_29 PF13555.1 62 7.9e-06 18.7 0.0 1 1 3.6e-07 1.6e-05 17.7 0.0 13 40 22 48 18 51 0.86 # 67678 # 68535 # -1 # ID=1_76;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.693 1_61 - 1278 AAA_29 PF13555.1 62 2.7e-05 17.0 0.8 1 1 4.7e-06 0.00021 14.2 0.1 22 42 155 175 145 179 0.80 # 52919 # 56752 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.713 2_26 - 250 AAA_29 PF13555.1 62 7.2e-05 15.6 0.1 1 1 3.8e-06 0.00017 14.4 0.1 16 39 21 44 12 51 0.79 # 13553 # 14302 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.676 1_53 - 385 AAA PF00004.24 132 0.00076 13.0 0.0 1 1 1.5e-05 0.002 11.7 0.0 8 53 126 193 120 248 0.81 # 46102 # 47256 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.640 1_29 - 190 MMR_HSR1 PF01926.18 116 0.00041 13.6 0.0 1 1 4.4e-06 0.00059 13.1 0.0 2 58 7 83 6 140 0.66 # 23074 # 23643 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.702 1_76 - 286 DUF258 PF03193.11 161 0.00034 13.1 0.0 1 1 8.4e-06 0.00056 12.4 0.0 17 61 12 57 2 80 0.80 # 67678 # 68535 # -1 # ID=1_76;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.693 2_26 - 250 DUF258 PF03193.11 161 0.0012 11.4 0.0 1 1 2.7e-05 0.0018 10.8 0.0 34 52 27 45 12 56 0.83 # 13553 # 14302 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.676 1_28 - 280 NAD_binding_2 PF03446.10 163 5.7e-10 32.6 0.1 1 1 6.5e-12 8.7e-10 32.0 0.1 4 158 6 156 3 160 0.87 # 22227 # 23066 # 1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_53 - 385 AAA_31 PF13614.1 157 8.3e-12 38.6 0.1 1 1 1.4e-12 9.5e-11 35.2 0.0 9 134 124 258 116 267 0.84 # 46102 # 47256 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.640 1_72 - 691 AAA_31 PF13614.1 157 0.00031 14.0 0.0 1 2 0.00048 0.032 7.5 0.0 7 47 251 290 243 310 0.73 # 63294 # 65366 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.694 1_72 - 691 AAA_31 PF13614.1 157 0.00031 14.0 0.0 2 2 0.0058 0.39 3.9 0.0 104 127 323 346 317 349 0.89 # 63294 # 65366 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.694 1_30 - 338 AAA_33 PF13671.1 143 2.3e-15 50.1 0.0 1 1 2.8e-16 9.3e-15 48.1 0.0 1 140 151 301 151 303 0.89 # 23640 # 24653 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.675 1_29 - 190 AAA_33 PF13671.1 143 1.5e-08 27.9 0.0 1 1 1.3e-09 4.2e-08 26.5 0.0 2 139 7 149 7 153 0.74 # 23074 # 23643 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.702 2_26 - 250 AAA_33 PF13671.1 143 0.00014 15.0 0.1 1 1 6.2e-06 0.00021 14.5 0.1 2 27 31 56 31 167 0.83 # 13553 # 14302 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.676 1_76 - 286 AAA_33 PF13671.1 143 0.00029 14.1 4.0 1 1 0.0003 0.01 9.1 4.0 1 33 33 90 33 251 0.57 # 67678 # 68535 # -1 # ID=1_76;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.693 1_28 - 280 NAD_Gly3P_dh_N PF01210.18 157 0.00081 12.4 2.5 1 1 0.00054 0.071 6.1 2.5 2 33 6 36 5 158 0.63 # 22227 # 23066 # 1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_28 - 280 2-Hacid_dh_C PF02826.14 178 8.6e-08 24.8 0.0 1 1 9.3e-10 1.2e-07 24.3 0.0 36 101 3 71 1 100 0.88 # 22227 # 23066 # 1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_76 - 286 AAA_30 PF13604.1 196 0.00016 14.6 0.0 1 2 1.1e-05 0.0015 11.4 0.0 15 55 29 68 20 87 0.71 # 67678 # 68535 # -1 # ID=1_76;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.693 1_76 - 286 AAA_30 PF13604.1 196 0.00016 14.6 0.0 2 2 0.025 3.3 0.5 0.0 40 122 97 183 93 192 0.64 # 67678 # 68535 # -1 # ID=1_76;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.693 2_26 - 250 FtsK_SpoIIIE PF01580.13 205 0.00011 15.0 0.0 1 2 1.4e-05 0.00096 11.9 0.0 24 55 12 45 3 65 0.87 # 13553 # 14302 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.676 2_26 - 250 FtsK_SpoIIIE PF01580.13 205 0.00011 15.0 0.0 2 2 0.05 3.4 0.4 0.0 22 46 203 227 188 229 0.79 # 13553 # 14302 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.676 1_43 - 740 FtsK_SpoIIIE PF01580.13 205 0.00042 13.1 0.1 1 1 2.6e-05 0.0017 11.1 0.0 39 120 355 432 329 436 0.82 # 33183 # 35402 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.716 1_76 - 286 ABC_tran PF00005.22 137 2.9e-28 92.2 0.0 1 1 1.3e-29 5.6e-28 91.3 0.0 1 136 21 163 21 164 0.95 # 67678 # 68535 # -1 # ID=1_76;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.693 2_26 - 250 ABC_tran PF00005.22 137 1.7e-05 18.5 0.0 1 1 6.5e-07 2.9e-05 17.7 0.0 9 31 26 48 24 68 0.88 # 13553 # 14302 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.676 1_61 - 1278 ABC_tran PF00005.22 137 0.0009 12.9 0.1 1 1 4.6e-05 0.0021 11.7 0.1 4 30 149 175 146 181 0.90 # 52919 # 56752 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.713 1_29 - 190 TIGR03263 TIGR03263 180 0.0015 11.2 0.0 1 1 2.1e-05 0.0028 10.3 0.0 4 134 7 132 4 153 0.73 # 23074 # 23643 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.702 1_43 - 740 DAP3 PF10236.4 309 0.0015 10.8 0.0 1 2 0.00015 0.021 7.0 0.1 24 60 357 394 351 405 0.84 # 33183 # 35402 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.716 1_43 - 740 DAP3 PF10236.4 309 0.0015 10.8 0.0 2 2 0.0064 0.86 1.7 0.0 120 182 398 468 395 476 0.75 # 33183 # 35402 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.716 1_76 - 286 AAA_19 PF13245.1 76 0.00016 14.8 0.1 1 1 3.3e-06 0.00044 13.3 0.1 10 61 31 79 25 100 0.74 # 67678 # 68535 # -1 # ID=1_76;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.693 1_43 - 740 AAA_10 PF12846.2 304 9.1e-10 31.7 0.1 1 2 0.0015 0.1 5.3 0.0 2 32 357 387 356 400 0.84 # 33183 # 35402 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.716 1_43 - 740 AAA_10 PF12846.2 304 9.1e-10 31.7 0.1 2 2 2.7e-09 1.8e-07 24.1 0.0 218 270 439 498 408 509 0.80 # 33183 # 35402 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.716 2_26 - 250 AAA_10 PF12846.2 304 3e-06 20.1 0.1 1 2 5.6e-06 0.00037 13.3 0.0 2 40 29 63 28 78 0.82 # 13553 # 14302 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.676 2_26 - 250 AAA_10 PF12846.2 304 3e-06 20.1 0.1 2 2 0.0016 0.11 5.1 0.0 220 300 126 204 95 206 0.86 # 13553 # 14302 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.676 1_76 - 286 SbcCD_C PF13558.1 90 0.00011 15.4 0.1 1 1 4e-05 0.0027 11.0 0.1 25 89 128 179 116 180 0.76 # 67678 # 68535 # -1 # ID=1_76;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.693 1_41 - 157 SbcCD_C PF13558.1 90 0.00068 12.9 0.1 1 1 1.8e-05 0.0012 12.1 0.1 20 72 16 66 9 74 0.78 # 32289 # 32759 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.696 1_94 - 885 ResIII PF04851.10 184 3.3e-21 69.2 0.0 1 1 1.2e-22 1.6e-20 67.0 0.0 2 183 5 193 4 194 0.85 # 81811 # 84465 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.699 1_43 - 740 Zot PF05707.7 193 0.001 11.8 0.0 1 1 1.5e-05 0.002 10.9 0.0 82 126 444 489 426 491 0.83 # 33183 # 35402 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.716 1_18 - 501 DUF3584 PF12128.3 1201 0.043 4.3 22.2 1 1 0.0013 0.17 2.4 22.0 343 525 221 400 210 404 0.69 # 14769 # 16271 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.676 1_17 - 462 RRF PF01765.14 165 0.0049 9.7 6.6 1 1 1.8e-05 0.0024 10.6 3.9 96 149 225 278 219 285 0.91 # 13283 # 14668 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.673 1_94 - 885 DEAD PF00270.24 169 2.7e-11 36.6 0.0 1 1 3.1e-13 4.1e-11 35.9 0.0 2 163 9 193 8 197 0.77 # 81811 # 84465 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.699 1_43 - 740 DUF853 PF05872.7 504 0.0006 11.5 0.0 1 1 7.5e-06 0.001 10.8 0.0 257 303 441 490 438 504 0.79 # 33183 # 35402 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.716 1_29 - 190 CPT PF07931.7 174 3.3e-13 42.9 0.6 1 1 7.2e-14 9.6e-12 38.1 0.6 51 172 57 179 5 181 0.60 # 23074 # 23643 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.702 1_76 - 286 ArgK PF03308.11 267 1.2e-05 17.5 0.1 1 1 1.6e-07 2.1e-05 16.7 0.1 14 68 16 70 2 74 0.87 # 67678 # 68535 # -1 # ID=1_76;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.693 1_76 - 286 UPF0079 PF02367.12 123 0.00053 13.0 0.0 1 1 8.2e-06 0.0011 11.9 0.0 10 32 26 48 18 62 0.81 # 67678 # 68535 # -1 # ID=1_76;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.693 1_28 - 280 IlvN PF07991.7 165 1.1e-05 18.2 0.0 1 1 1.4e-07 1.9e-05 17.4 0.0 5 77 4 78 1 86 0.87 # 22227 # 23066 # 1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.719 2_26 - 250 AAA_24 PF13479.1 213 0.00033 13.6 0.3 1 2 2.7e-05 0.0018 11.2 0.1 2 41 27 69 26 119 0.79 # 13553 # 14302 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.676 2_26 - 250 AAA_24 PF13479.1 213 0.00033 13.6 0.3 2 2 0.047 3.1 0.6 0.0 105 156 125 180 116 206 0.65 # 13553 # 14302 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.676 1_53 - 385 AAA_24 PF13479.1 213 0.00069 12.5 0.0 1 1 1.6e-05 0.0011 11.9 0.0 5 58 116 230 112 280 0.63 # 46102 # 47256 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.640 1_92 - 1211 NACHT PF05729.7 166 2.1e-05 17.5 0.0 1 1 8e-07 5.3e-05 16.2 0.0 12 130 63 194 57 201 0.83 # 77394 # 81026 # -1 # ID=1_92;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.700 2_26 - 250 NACHT PF05729.7 166 9.9e-05 15.3 0.5 1 1 4.5e-06 0.0003 13.8 0.1 3 22 31 50 29 54 0.89 # 13553 # 14302 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.676 2_26 - 250 AAA_25 PF13481.1 194 4.8e-05 16.1 0.2 1 1 6.3e-07 8.4e-05 15.3 0.1 17 53 12 48 2 110 0.91 # 13553 # 14302 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.676 1_94 - 885 SNF2_N PF00176.18 299 1.1e-06 20.9 0.0 1 1 1.2e-08 1.6e-06 20.4 0.0 1 172 10 192 10 196 0.74 # 81811 # 84465 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.699 1_76 - 286 AAA_28 PF13521.1 163 0.00024 14.4 0.0 1 1 5e-06 0.00066 13.0 0.0 2 21 34 57 33 116 0.68 # 67678 # 68535 # -1 # ID=1_76;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.693 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/af9e2080-5946-4f5a-bd83-20b5d3c946c2 # Target file: checkm_output/bins/pGCA_000444875.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000444875.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/af9e2080-5946-4f5a-bd83-20b5d3c946c2 checkm_output/bins/pGCA_000444875.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:41:21 2020 # [ok]