# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_8 - 236 Mg_chelatase PF01078.16 207 0.00026 12.1 0.1 1 1 9.7e-06 0.00047 11.2 0.1 27 52 36 61 33 84 0.88 # 4191 # 4898 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.664 1_8 - 236 cobW PF02492.14 178 0.00041 11.7 0.9 1 1 1.7e-05 0.0008 10.7 0.9 2 21 33 52 32 65 0.91 # 4191 # 4898 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.664 1_20 - 116 RuvB_C PF05491.8 76 4e-06 18.3 0.0 1 1 1.2e-07 5.7e-06 17.8 0.0 12 67 45 98 40 104 0.87 # 12569 # 12916 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.664 1_5 - 311 IstB_IS21 PF01695.12 178 0.00028 12.2 0.4 1 2 0.00012 0.0059 7.9 0.1 47 82 30 65 20 71 0.79 # 2193 # 3125 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.672 1_5 - 311 IstB_IS21 PF01695.12 178 0.00028 12.2 0.4 2 2 0.0069 0.33 2.2 0.0 105 149 149 192 138 203 0.83 # 2193 # 3125 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.672 1_48 - 196 MipZ PF09140.6 261 2.8e-12 38.1 0.9 1 1 6.3e-12 1.5e-10 32.4 0.9 2 138 2 118 1 168 0.83 # 45175 # 45762 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.616 1_43 - 196 MipZ PF09140.6 261 2.8e-12 38.1 0.4 1 1 5.1e-13 1.2e-11 36.0 0.4 2 115 2 117 1 121 0.78 # 41864 # 42451 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_48 - 196 YhjQ PF06564.7 244 0.00012 13.3 0.2 1 3 2.5e-05 0.0012 10.1 0.1 5 38 4 37 1 41 0.89 # 45175 # 45762 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.616 1_48 - 196 YhjQ PF06564.7 244 0.00012 13.3 0.2 2 3 0.079 3.8 -1.4 0.0 112 145 73 106 66 116 0.80 # 45175 # 45762 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.616 1_48 - 196 YhjQ PF06564.7 244 0.00012 13.3 0.2 3 3 0.039 1.9 -0.4 0.0 71 102 117 148 113 156 0.76 # 45175 # 45762 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.616 1_29 - 474 GIDA PF01134.17 392 3.7e-10 31.0 0.2 1 3 2.6e-08 6.3e-07 20.4 0.3 1 150 6 151 6 179 0.68 # 20012 # 21433 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.717 1_29 - 474 GIDA PF01134.17 392 3.7e-10 31.0 0.2 2 3 0.007 0.17 2.5 0.0 3 29 183 209 181 228 0.87 # 20012 # 21433 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.717 1_29 - 474 GIDA PF01134.17 392 3.7e-10 31.0 0.2 3 3 0.002 0.047 4.3 0.0 348 388 303 343 296 346 0.82 # 20012 # 21433 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.717 1_19 - 333 GIDA PF01134.17 392 3e-05 14.8 0.1 1 2 1.2e-06 3e-05 14.8 0.1 2 28 9 35 8 58 0.89 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_19 - 333 GIDA PF01134.17 392 3e-05 14.8 0.1 2 2 0.027 0.64 0.6 0.0 134 152 115 133 99 149 0.82 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_29 - 474 Pyr_redox_2 PF07992.9 201 1.3e-34 111.7 0.5 1 1 8.8e-36 2.1e-34 111.0 0.5 1 199 6 321 6 323 0.90 # 20012 # 21433 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.717 1_19 - 333 Pyr_redox_2 PF07992.9 201 3e-13 41.9 0.0 1 2 5.4e-14 1.3e-12 39.9 0.0 3 160 10 182 8 251 0.73 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_19 - 333 Pyr_redox_2 PF07992.9 201 3e-13 41.9 0.0 2 2 0.031 0.75 1.5 0.0 2 28 165 190 164 286 0.65 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_5 - 311 AAA_22 PF13401.1 131 9e-05 14.5 0.0 1 1 1.2e-05 0.0003 12.9 0.0 3 95 29 160 27 196 0.61 # 2193 # 3125 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.672 1_8 - 236 AAA_22 PF13401.1 131 0.00017 13.6 0.4 1 1 1.9e-05 0.00046 12.2 0.4 5 25 32 52 30 162 0.79 # 4191 # 4898 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.664 1_43 - 196 SRP54 PF00448.17 196 0.00013 13.3 0.0 1 1 4.6e-06 0.00022 12.5 0.0 11 60 11 58 2 163 0.78 # 41864 # 42451 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_8 - 236 AAA_15 PF13175.1 415 4.5e-06 17.7 0.0 1 2 5.4e-05 0.0026 8.6 0.0 17 42 26 51 16 81 0.87 # 4191 # 4898 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.664 1_8 - 236 AAA_15 PF13175.1 415 4.5e-06 17.7 0.0 2 2 0.00015 0.007 7.2 0.0 372 411 156 193 132 194 0.91 # 4191 # 4898 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.664 1_29 - 474 NAD_binding_7 PF13241.1 103 3.9e-05 15.8 0.1 1 1 4.6e-06 0.00011 14.3 0.1 9 41 181 216 176 277 0.73 # 20012 # 21433 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.717 1_19 - 333 NAD_binding_7 PF13241.1 103 0.0001 14.4 0.0 1 2 0.00023 0.0056 8.9 0.0 9 39 8 38 3 74 0.90 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_19 - 333 NAD_binding_7 PF13241.1 103 0.0001 14.4 0.0 2 2 0.013 0.3 3.3 0.0 5 39 160 193 159 264 0.86 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_43 - 196 AAA_17 PF13207.1 121 0.00016 14.4 0.0 1 1 8.7e-06 0.00042 13.0 0.0 9 77 11 85 9 129 0.59 # 41864 # 42451 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_5 - 311 AAA_21 PF13304.1 303 4.3e-14 44.9 0.0 1 2 3.1e-08 7.5e-07 21.2 0.0 1 24 32 55 32 79 0.85 # 2193 # 3125 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.672 1_5 - 311 AAA_21 PF13304.1 303 4.3e-14 44.9 0.0 2 2 1.9e-08 4.5e-07 21.9 0.0 235 299 133 193 124 197 0.91 # 2193 # 3125 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.672 1_8 - 236 AAA_21 PF13304.1 303 1.1e-11 37.1 0.1 1 2 6.2e-08 1.5e-06 20.2 0.1 1 22 33 54 33 62 0.92 # 4191 # 4898 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.664 1_8 - 236 AAA_21 PF13304.1 303 1.1e-11 37.1 0.1 2 2 2.3e-06 5.6e-05 15.0 0.0 235 301 134 197 115 199 0.80 # 4191 # 4898 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.664 1_43 - 196 MobB PF03205.9 140 0.00045 11.8 0.1 1 1 5.4e-05 0.0013 10.3 0.0 7 39 8 39 1 44 0.80 # 41864 # 42451 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_8 - 236 MobB PF03205.9 140 0.00049 11.7 0.2 1 1 4.8e-05 0.0011 10.5 0.1 4 24 35 55 33 72 0.84 # 4191 # 4898 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.664 1_43 - 196 LpxK PF02606.9 326 0.00015 12.6 0.0 1 1 4.1e-06 0.0002 12.2 0.0 38 70 3 34 1 54 0.86 # 41864 # 42451 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_48 - 196 ArsA_ATPase PF02374.10 305 2.3e-06 18.7 0.7 1 2 6.6e-07 1.6e-05 15.9 0.3 6 38 6 38 1 55 0.89 # 45175 # 45762 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.616 1_48 - 196 ArsA_ATPase PF02374.10 305 2.3e-06 18.7 0.7 2 2 0.03 0.71 0.6 0.0 212 242 103 133 94 154 0.81 # 45175 # 45762 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.616 1_43 - 196 ArsA_ATPase PF02374.10 305 5.5e-06 17.4 0.1 1 2 7.2e-07 1.7e-05 15.8 0.0 6 47 6 47 1 58 0.81 # 41864 # 42451 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_43 - 196 ArsA_ATPase PF02374.10 305 5.5e-06 17.4 0.1 2 2 0.086 2.1 -0.9 0.0 116 136 67 88 51 94 0.71 # 41864 # 42451 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_19 - 333 Shikimate_DH PF01488.15 135 0.00076 11.5 1.0 1 1 2.7e-05 0.0013 10.7 0.1 11 40 5 34 1 35 0.87 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_19 - 333 NAD_binding_8 PF13450.1 68 3.3e-11 35.0 0.7 1 1 7e-12 1.7e-10 32.8 0.1 1 33 11 43 11 51 0.96 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_29 - 474 NAD_binding_8 PF13450.1 68 0.0053 8.7 6.4 1 1 7.5e-05 0.0018 10.2 1.7 1 35 9 42 9 73 0.88 # 20012 # 21433 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.717 1_19 - 333 FAD_binding_3 PF01494.14 356 5.4e-09 27.3 0.6 1 3 1.3e-08 6.4e-07 20.5 0.0 3 33 8 38 6 41 0.91 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_19 - 333 FAD_binding_3 PF01494.14 356 5.4e-09 27.3 0.6 2 3 0.017 0.82 0.4 0.0 152 173 114 134 99 137 0.84 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_19 - 333 FAD_binding_3 PF01494.14 356 5.4e-09 27.3 0.6 3 3 0.0034 0.16 2.7 0.0 2 23 163 184 162 196 0.86 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_5 - 311 SMC_N PF02463.14 220 3e-07 21.7 0.1 1 2 1.9e-05 0.00046 11.3 0.0 24 42 30 48 25 58 0.84 # 2193 # 3125 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.672 1_5 - 311 SMC_N PF02463.14 220 3e-07 21.7 0.1 2 2 0.00015 0.0035 8.4 0.1 161 208 155 202 140 214 0.77 # 2193 # 3125 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.672 1_8 - 236 SMC_N PF02463.14 220 1e-06 20.0 0.0 1 2 4.7e-06 0.00011 13.3 0.0 19 44 26 51 19 57 0.85 # 4191 # 4898 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.664 1_8 - 236 SMC_N PF02463.14 220 1e-06 20.0 0.0 2 2 0.0019 0.045 4.8 0.0 118 198 114 193 83 211 0.73 # 4191 # 4898 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.664 1_43 - 196 VirC1 PF07015.6 231 2e-11 35.2 0.0 1 1 1.3e-12 3e-11 34.6 0.0 4 119 3 114 1 127 0.86 # 41864 # 42451 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_48 - 196 VirC1 PF07015.6 231 2.4e-10 31.7 0.0 1 1 1.4e-11 3.3e-10 31.2 0.0 4 133 3 128 1 149 0.88 # 45175 # 45762 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.616 1_43 - 196 Fer4_NifH PF00142.13 273 0.00055 11.0 0.1 1 1 1.9e-05 0.00091 10.3 0.1 5 33 6 34 2 44 0.87 # 41864 # 42451 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_8 - 236 AAA_16 PF13191.1 185 0.00024 13.0 0.2 1 1 7.7e-06 0.00037 12.4 0.2 26 85 33 85 25 180 0.63 # 4191 # 4898 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.664 1_8 - 236 AAA_23 PF13476.1 202 2.5e-06 19.8 0.1 1 1 1.6e-07 3.9e-06 19.2 0.1 15 41 27 53 15 62 0.85 # 4191 # 4898 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.664 1_5 - 311 AAA_23 PF13476.1 202 6.5e-05 15.2 0.2 1 1 4.2e-06 0.0001 14.5 0.2 18 39 29 50 19 54 0.83 # 2193 # 3125 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.672 1_8 - 236 AAA_13 PF13166.1 712 0.00054 10.3 0.0 1 1 2.4e-05 0.0012 9.2 0.1 21 36 36 51 29 57 0.85 # 4191 # 4898 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.664 1_48 - 196 CbiA PF01656.18 195 4.4e-21 67.0 0.2 1 1 3.7e-22 9e-21 66.0 0.2 2 188 4 164 3 171 0.75 # 45175 # 45762 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.616 1_43 - 196 CbiA PF01656.18 195 7.6e-21 66.2 0.0 1 1 4.5e-22 1.1e-20 65.7 0.0 1 167 3 146 3 171 0.76 # 41864 # 42451 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_19 - 333 HI0933_like PF03486.9 409 1.1e-09 29.0 0.0 1 2 1e-06 2.4e-05 14.7 0.1 2 36 8 42 7 43 0.94 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_19 - 333 HI0933_like PF03486.9 409 1.1e-09 29.0 0.0 2 2 8e-06 0.00019 11.8 0.0 108 168 77 135 74 141 0.93 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_29 - 474 HI0933_like PF03486.9 409 0.0004 10.7 2.6 1 2 9.1e-05 0.0022 8.3 1.2 1 33 5 37 5 46 0.90 # 20012 # 21433 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.717 1_29 - 474 HI0933_like PF03486.9 409 0.0004 10.7 2.6 2 2 0.013 0.3 1.3 0.0 108 163 218 276 188 282 0.76 # 20012 # 21433 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.717 1_8 - 236 AAA_29 PF13555.1 62 6.5e-06 17.6 0.1 1 1 6e-07 1.4e-05 16.5 0.1 23 40 32 48 21 55 0.83 # 4191 # 4898 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.664 1_5 - 311 AAA_29 PF13555.1 62 0.00011 13.6 0.1 1 1 8.4e-06 0.0002 12.8 0.1 17 40 25 47 18 65 0.78 # 2193 # 3125 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.672 1_19 - 333 FAD_binding_2 PF00890.19 417 2.1e-07 21.9 0.1 1 2 1.5e-07 3.7e-06 17.8 0.0 2 36 9 43 8 51 0.90 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_19 - 333 FAD_binding_2 PF00890.19 417 2.1e-07 21.9 0.1 2 2 0.0089 0.21 2.1 0.0 186 211 116 154 76 212 0.69 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_29 - 474 FAD_binding_2 PF00890.19 417 3.4e-05 14.6 5.3 1 2 1.4e-06 3.4e-05 14.6 5.3 1 36 6 40 6 66 0.86 # 20012 # 21433 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.717 1_29 - 474 FAD_binding_2 PF00890.19 417 3.4e-05 14.6 5.3 2 2 0.0061 0.15 2.7 0.5 142 239 220 306 202 348 0.64 # 20012 # 21433 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.717 1_5 - 311 AAA PF00004.24 132 0.00043 12.4 0.2 1 1 4.3e-05 0.0021 10.2 0.2 3 25 35 57 33 219 0.81 # 2193 # 3125 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.672 1_19 - 333 Thi4 PF01946.12 230 1.6e-07 22.5 0.3 1 2 1.1e-08 5.1e-07 20.8 0.0 19 56 8 45 4 58 0.87 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_19 - 333 Thi4 PF01946.12 230 1.6e-07 22.5 0.3 2 2 0.083 4 -1.7 0.1 18 37 163 182 153 187 0.79 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_19 - 333 Pyr_redox_3 PF13738.1 203 8.5e-31 99.4 0.0 1 2 2.8e-31 6.7e-30 96.5 0.0 1 202 10 196 10 198 0.90 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_19 - 333 Pyr_redox_3 PF13738.1 203 8.5e-31 99.4 0.0 2 2 0.06 1.4 0.7 0.0 123 137 259 273 238 326 0.72 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_29 - 474 Pyr_redox_3 PF13738.1 203 6.2e-10 31.3 0.9 1 2 2.6e-08 6.3e-07 21.5 0.1 1 201 8 213 8 215 0.65 # 20012 # 21433 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.717 1_29 - 474 Pyr_redox_3 PF13738.1 203 6.2e-10 31.3 0.9 2 2 0.00035 0.0083 8.0 0.0 81 144 218 285 213 318 0.71 # 20012 # 21433 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.717 1_8 - 236 MMR_HSR1 PF01926.18 116 0.00017 13.4 0.1 1 1 1.8e-05 0.00085 11.2 0.1 3 23 35 55 33 192 0.67 # 4191 # 4898 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.664 1_43 - 196 AAA_31 PF13614.1 157 3e-12 38.6 0.1 1 3 7.4e-10 1.8e-08 26.4 0.0 2 44 2 44 1 56 0.89 # 41864 # 42451 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_43 - 196 AAA_31 PF13614.1 157 3e-12 38.6 0.1 2 3 0.00028 0.0068 8.2 0.0 119 154 79 114 64 117 0.74 # 41864 # 42451 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_43 - 196 AAA_31 PF13614.1 157 3e-12 38.6 0.1 3 3 0.07 1.7 0.4 0.0 52 72 140 160 124 180 0.77 # 41864 # 42451 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_48 - 196 AAA_31 PF13614.1 157 4.4e-10 31.6 0.0 1 2 7.2e-10 1.7e-08 26.4 0.0 2 43 2 43 1 54 0.93 # 45175 # 45762 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.616 1_48 - 196 AAA_31 PF13614.1 157 4.4e-10 31.6 0.0 2 2 0.0088 0.21 3.4 0.0 119 154 80 114 60 117 0.79 # 45175 # 45762 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.616 1_5 - 311 AAA_33 PF13671.1 143 0.00019 13.2 0.1 1 1 5.4e-05 0.0013 10.5 0.0 1 47 32 105 32 192 0.54 # 2193 # 3125 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.672 1_8 - 236 AAA_33 PF13671.1 143 0.00049 11.9 0.3 1 1 4.8e-05 0.0012 10.7 0.3 1 20 33 52 33 203 0.80 # 4191 # 4898 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.664 1_38 - 948 Methyltransf_26 PF13659.1 117 9.2e-10 30.5 0.0 1 2 0.052 2.5 0.1 0.0 48 95 124 219 54 267 0.71 # 31230 # 34073 # 1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.593 1_38 - 948 Methyltransf_26 PF13659.1 117 9.2e-10 30.5 0.0 2 2 2e-10 9.8e-09 27.2 0.0 5 93 395 539 393 579 0.76 # 31230 # 34073 # 1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.593 1_5 - 311 AAA_30 PF13604.1 196 5.1e-06 18.0 0.2 1 1 2.1e-07 5.1e-06 18.0 0.2 14 59 26 71 23 72 0.94 # 2193 # 3125 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.672 1_8 - 236 AAA_30 PF13604.1 196 0.00015 13.2 0.5 1 1 1.6e-05 0.00038 11.9 0.5 20 82 33 103 27 163 0.69 # 4191 # 4898 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.664 1_19 - 333 Lycopene_cycl PF05834.7 374 0.0006 10.6 2.3 1 2 1.5e-05 0.00071 10.4 0.1 3 44 10 49 8 57 0.88 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_19 - 333 Lycopene_cycl PF05834.7 374 0.0006 10.6 2.3 2 2 0.03 1.4 -0.5 0.3 2 20 165 183 164 188 0.87 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_8 - 236 ABC_tran PF00005.22 137 1.2e-27 88.8 0.0 1 1 6.2e-29 1.5e-27 88.5 0.0 5 136 26 163 22 164 0.91 # 4191 # 4898 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.664 1_5 - 311 ABC_tran PF00005.22 137 1e-23 76.0 0.0 1 1 8.8e-25 2.1e-23 75.0 0.0 3 136 22 162 20 163 0.83 # 2193 # 3125 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.672 1_19 - 333 K_oxygenase PF13434.1 341 1.7e-11 35.4 0.0 1 3 0.0093 0.22 2.1 0.0 191 212 7 28 3 42 0.71 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_19 - 333 K_oxygenase PF13434.1 341 1.7e-11 35.4 0.0 2 3 6.3e-11 1.5e-09 29.0 0.0 118 225 101 194 75 202 0.83 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_19 - 333 K_oxygenase PF13434.1 341 1.7e-11 35.4 0.0 3 3 0.041 0.99 0.0 0.0 326 340 259 273 244 274 0.88 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_29 - 474 K_oxygenase PF13434.1 341 1.5e-05 15.9 0.1 1 1 3.5e-06 8.3e-05 13.4 0.0 131 246 127 235 116 248 0.79 # 20012 # 21433 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.717 1_5 - 311 AAA_19 PF13245.1 76 6e-06 17.9 0.2 1 1 1.1e-06 1.8e-05 16.4 0.2 10 53 30 69 25 72 0.79 # 2193 # 3125 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.672 1_43 - 196 AAA_19 PF13245.1 76 4.5e-05 15.1 0.0 1 2 4.7e-05 0.00076 11.2 0.0 13 46 4 33 3 55 0.84 # 41864 # 42451 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_43 - 196 AAA_19 PF13245.1 76 4.5e-05 15.1 0.0 2 2 0.051 0.82 1.4 0.0 7 20 77 89 71 141 0.83 # 41864 # 42451 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_48 - 196 AAA_19 PF13245.1 76 7.2e-05 14.4 0.3 1 2 0.00013 0.002 9.8 0.1 14 47 5 34 3 58 0.84 # 45175 # 45762 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.616 1_48 - 196 AAA_19 PF13245.1 76 7.2e-05 14.4 0.3 2 2 0.026 0.42 2.4 0.0 4 20 74 89 71 98 0.83 # 45175 # 45762 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.616 1_48 - 196 AAA_10 PF12846.2 304 6.8e-05 14.2 0.0 1 1 3.3e-06 7.9e-05 14.0 0.0 7 47 7 49 3 101 0.83 # 45175 # 45762 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.616 1_8 - 236 AAA_10 PF12846.2 304 0.00039 11.7 0.2 1 1 2.8e-05 0.00067 11.0 0.2 4 22 34 52 32 65 0.86 # 4191 # 4898 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.664 1_29 - 474 FAD_oxidored PF12831.2 428 8.8e-08 23.4 9.1 1 2 1.6e-07 3.9e-06 17.9 6.1 1 43 6 47 6 65 0.87 # 20012 # 21433 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.717 1_29 - 474 FAD_oxidored PF12831.2 428 8.8e-08 23.4 9.1 2 2 0.00064 0.015 6.1 0.0 88 142 218 271 161 274 0.82 # 20012 # 21433 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.717 1_19 - 333 FAD_oxidored PF12831.2 428 1.2e-05 16.3 0.1 1 1 9.7e-07 2.3e-05 15.4 0.1 3 39 10 46 8 58 0.92 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_19 - 333 DAO PF01266.19 358 2.1e-14 45.0 5.1 1 2 1.6e-11 3.8e-10 31.0 0.2 2 43 9 44 8 97 0.81 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_19 - 333 DAO PF01266.19 358 2.1e-14 45.0 5.1 2 2 5.2e-07 1.2e-05 16.1 0.8 173 343 104 301 95 313 0.61 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_29 - 474 DAO PF01266.19 358 0.021 5.5 16.8 1 3 0.00039 0.0093 6.7 3.1 1 43 6 46 6 75 0.87 # 20012 # 21433 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.717 1_29 - 474 DAO PF01266.19 358 0.021 5.5 16.8 2 3 0.0039 0.093 3.4 0.1 2 35 182 215 181 222 0.93 # 20012 # 21433 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.717 1_29 - 474 DAO PF01266.19 358 0.021 5.5 16.8 3 3 0.0046 0.11 3.1 2.0 151 201 223 277 217 359 0.64 # 20012 # 21433 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.717 1_19 - 333 ThiF PF00899.16 136 0.00025 12.8 1.1 1 2 1.4e-05 0.00069 11.3 0.0 4 33 8 37 5 40 0.90 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_19 - 333 ThiF PF00899.16 136 0.00025 12.8 1.1 2 2 0.067 3.2 -0.6 0.2 2 24 162 184 161 186 0.89 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_8 - 236 DUF3584 PF12128.3 1201 2.2e-05 13.7 0.3 1 1 6.1e-07 2.9e-05 13.3 0.3 9 37 23 51 17 56 0.82 # 4191 # 4898 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.664 1_19 - 333 FMO-like PF00743.14 532 7.9e-12 35.9 0.0 1 2 0.00028 0.014 5.4 0.0 49 97 44 91 9 96 0.88 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_19 - 333 FMO-like PF00743.14 532 7.9e-12 35.9 0.0 2 2 3.4e-11 1.7e-09 28.2 0.0 141 219 124 198 110 205 0.88 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_19 - 333 NAD_binding_9 PF13454.1 156 9.8e-07 20.5 1.8 1 2 1.1e-05 0.00053 11.7 0.1 1 44 10 47 10 61 0.74 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_19 - 333 NAD_binding_9 PF13454.1 156 9.8e-07 20.5 1.8 2 2 0.0004 0.019 6.6 0.1 89 155 73 131 61 132 0.75 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_29 - 474 Pyr_redox PF00070.22 80 9.8e-18 56.3 4.6 1 2 0.00051 0.012 8.0 0.6 2 31 7 36 6 38 0.95 # 20012 # 21433 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.717 1_29 - 474 Pyr_redox PF00070.22 80 9.8e-18 56.3 4.6 2 2 6.5e-17 1.6e-15 49.3 0.2 1 76 181 255 181 262 0.87 # 20012 # 21433 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.717 1_19 - 333 Pyr_redox PF00070.22 80 8.4e-08 24.5 0.1 1 2 4.3e-05 0.001 11.4 0.0 2 34 9 41 8 45 0.91 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_19 - 333 Pyr_redox PF00070.22 80 8.4e-08 24.5 0.1 2 2 5.8e-05 0.0014 11.0 0.0 1 32 164 194 164 206 0.89 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_19 - 333 Amino_oxidase PF01593.19 450 2.9e-08 25.0 0.0 1 2 3.7e-09 1.8e-07 22.4 0.0 2 35 17 51 17 60 0.88 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_19 - 333 Amino_oxidase PF01593.19 450 2.9e-08 25.0 0.0 2 2 0.02 0.97 0.2 0.0 226 273 99 141 54 146 0.71 # 11530 # 12528 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.678 1_29 - 474 AlaDh_PNT_C PF01262.16 168 0.00025 12.5 0.8 1 1 1.5e-05 0.00072 11.0 0.0 10 53 169 212 162 235 0.77 # 20012 # 21433 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.717 1_8 - 236 NACHT PF05729.7 166 7.6e-05 14.3 0.2 1 1 3.1e-06 0.00015 13.3 0.2 3 21 34 52 32 57 0.89 # 4191 # 4898 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.664 1_8 - 236 AAA_25 PF13481.1 194 1.5e-05 16.3 0.0 1 1 1.5e-06 2.4e-05 15.7 0.0 34 174 32 183 21 193 0.74 # 4191 # 4898 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.664 1_48 - 196 AAA_25 PF13481.1 194 1.9e-05 16.0 0.0 1 1 1.9e-06 3.1e-05 15.3 0.0 36 97 4 53 2 98 0.69 # 45175 # 45762 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.616 1_43 - 196 AAA_25 PF13481.1 194 0.00022 12.5 0.3 1 1 3e-05 0.00048 11.4 0.3 36 65 4 34 2 134 0.70 # 41864 # 42451 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_43 - 196 APS_kinase PF01583.15 157 0.0002 12.9 0.0 1 2 0.00012 0.0058 8.2 0.0 11 39 10 38 2 45 0.89 # 41864 # 42451 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_43 - 196 APS_kinase PF01583.15 157 0.0002 12.9 0.0 2 2 0.0062 0.3 2.6 0.0 55 106 110 163 103 169 0.85 # 41864 # 42451 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/4c16a1b4-b37e-416f-b8b8-28b124b30831 # Target file: checkm_output/bins/pGCA_000442645.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000442645.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4c16a1b4-b37e-416f-b8b8-28b124b30831 checkm_output/bins/pGCA_000442645.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:41:19 2020 # [ok]