# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 6_1 - 260 IstB_IS21 PF01695.12 178 1.5e-62 202.5 0.0 1 1 3.5e-64 2.3e-62 201.9 0.0 3 177 64 238 62 239 0.98 # 70 # 849 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.368 1_4 - 349 MipZ PF09140.6 261 9.6e-09 26.9 1.3 1 2 2.1e-06 0.00014 13.3 0.3 1 41 48 89 48 130 0.80 # 3756 # 4802 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.301 1_4 - 349 MipZ PF09140.6 261 9.6e-09 26.9 1.3 2 2 3.4e-06 0.00022 12.6 0.0 79 125 149 195 132 199 0.90 # 3756 # 4802 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.301 1_4 - 349 YhjQ PF06564.7 244 0.00013 13.7 0.0 1 1 4.3e-06 0.00028 12.5 0.0 10 149 56 200 49 226 0.70 # 3756 # 4802 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.301 1_12 - 383 Methyltransf_18 PF12847.2 112 1e-06 21.7 0.1 1 1 3.6e-08 2.3e-06 20.5 0.1 2 77 183 258 182 300 0.73 # 9676 # 10824 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_15 - 127 AAA_22 PF13401.1 131 7.9e-15 47.5 0.0 1 1 3.1e-16 1e-14 47.2 0.0 1 63 23 101 23 121 0.88 # 13371 # 13751 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 6_1 - 260 AAA_22 PF13401.1 131 7.3e-07 21.7 0.2 1 2 0.00013 0.0044 9.5 0.1 7 21 111 125 106 134 0.87 # 70 # 849 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.368 6_1 - 260 AAA_22 PF13401.1 131 7.3e-07 21.7 0.2 2 2 0.00021 0.0069 8.8 0.0 73 113 145 196 126 213 0.68 # 70 # 849 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.368 1_12 - 383 Methyltransf_11 PF08241.7 95 1.9e-05 17.4 0.0 1 1 1.5e-06 9.7e-05 15.2 0.0 3 50 189 238 187 258 0.86 # 9676 # 10824 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 6_1 - 260 AAA_17 PF13207.1 121 0.00031 13.9 0.6 1 1 1.7e-05 0.0011 12.1 0.1 2 19 111 128 110 231 0.73 # 70 # 849 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.368 1_12 - 383 ADH_zinc_N_2 PF13602.1 127 0.00012 15.3 0.0 1 1 5.7e-06 0.00037 13.7 0.0 14 118 240 370 206 379 0.64 # 9676 # 10824 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_12 - 383 ADH_zinc_N PF00107.21 130 6.9e-17 53.5 0.1 1 2 9.3e-18 6e-16 50.5 0.1 1 67 193 260 193 272 0.88 # 9676 # 10824 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_12 - 383 ADH_zinc_N PF00107.21 130 6.9e-17 53.5 0.1 2 2 0.032 2.1 0.2 0.0 72 110 285 323 279 338 0.86 # 9676 # 10824 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_4 - 349 ArsA_ATPase PF02374.10 305 4.4e-05 14.9 3.0 1 2 0.07 2.3 -0.6 0.0 190 208 30 48 18 55 0.78 # 3756 # 4802 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.301 1_4 - 349 ArsA_ATPase PF02374.10 305 4.4e-05 14.9 3.0 2 2 2.1e-06 6.7e-05 14.3 0.4 8 38 55 86 48 181 0.79 # 3756 # 4802 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.301 6_1 - 260 ArsA_ATPase PF02374.10 305 0.0002 12.7 0.2 1 2 0.098 3.2 -1.1 0.1 242 268 45 69 6 86 0.60 # 70 # 849 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.368 6_1 - 260 ArsA_ATPase PF02374.10 305 0.0002 12.7 0.2 2 2 1.7e-05 0.00056 11.3 0.0 4 37 111 145 108 225 0.83 # 70 # 849 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.368 6_1 - 260 PhoH PF02562.11 205 3.9e-07 21.8 0.0 1 1 8.9e-09 5.8e-07 21.2 0.0 2 87 91 178 90 245 0.79 # 70 # 849 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.368 1_4 - 349 Fer4_NifH PF00142.13 273 3.7e-05 15.3 0.1 1 1 1.9e-06 0.00012 13.6 0.0 7 48 55 97 49 132 0.84 # 3756 # 4802 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.301 6_1 - 260 AAA_16 PF13191.1 185 0.00019 13.7 0.1 1 1 7.4e-06 0.00048 12.4 0.0 24 41 108 125 92 178 0.85 # 70 # 849 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.368 1_4 - 349 CbiA PF01656.18 195 1.8e-29 94.8 1.0 1 1 3.8e-31 2.5e-29 94.4 1.0 1 192 50 272 50 274 0.78 # 3756 # 4802 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.301 1_12 - 383 Methyltransf_25 PF13649.1 101 0.00028 13.6 0.0 1 1 8.9e-06 0.00058 12.6 0.0 4 45 189 228 186 261 0.74 # 9676 # 10824 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 6_1 - 260 KaiC PF06745.8 227 7e-05 14.3 0.2 1 3 0.095 6.2 -1.9 0.1 97 129 21 54 5 73 0.64 # 70 # 849 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.368 6_1 - 260 KaiC PF06745.8 227 7e-05 14.3 0.2 2 3 4.3e-06 0.00028 12.3 0.0 19 68 108 156 94 178 0.84 # 70 # 849 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.368 6_1 - 260 KaiC PF06745.8 227 7e-05 14.3 0.2 3 3 0.088 5.8 -1.8 0.0 117 146 171 197 159 221 0.59 # 70 # 849 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.368 6_1 - 260 AAA PF00004.24 132 4.7e-09 28.9 0.2 1 1 3.6e-10 1.2e-08 27.6 0.0 1 111 111 210 111 240 0.78 # 70 # 849 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.368 1_15 - 127 AAA PF00004.24 132 5.6e-05 15.7 0.0 1 1 5.5e-06 0.00018 14.0 0.0 3 23 31 51 30 77 0.70 # 13371 # 13751 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 6_1 - 260 Bac_DnaA PF00308.13 219 3.7e-14 45.1 0.0 1 1 1.1e-15 7.2e-14 44.2 0.0 33 136 107 208 101 213 0.93 # 70 # 849 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.368 6_1 - 260 Sigma54_activat PF00158.21 168 0.00022 13.0 0.1 1 1 2.8e-05 0.0019 10.0 0.0 17 65 103 151 90 207 0.72 # 70 # 849 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.368 6_1 - 260 DUF258 PF03193.11 161 0.00023 12.7 0.0 1 1 7.3e-06 0.00047 11.7 0.0 18 53 91 126 74 177 0.75 # 70 # 849 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.368 1_4 - 349 AAA_31 PF13614.1 157 6.9e-08 24.9 0.3 1 1 3.2e-09 2.1e-07 23.3 0.3 9 152 56 202 54 206 0.85 # 3756 # 4802 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.301 6_1 - 260 RuvB_N PF05496.7 234 0.00015 13.1 0.0 1 1 3.7e-06 0.00024 12.5 0.0 48 113 106 181 56 196 0.76 # 70 # 849 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.368 6_1 - 260 AAA_19 PF13245.1 76 0.00032 12.8 0.0 1 1 9.4e-06 0.00061 11.9 0.0 16 52 114 146 105 163 0.88 # 70 # 849 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.368 6_1 - 260 AAA_10 PF12846.2 304 9.7e-05 14.2 0.1 1 2 5.6e-06 0.00036 12.3 0.0 3 30 110 145 108 181 0.72 # 70 # 849 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.368 6_1 - 260 AAA_10 PF12846.2 304 9.7e-05 14.2 0.1 2 2 0.089 5.8 -1.5 0.0 219 246 168 195 157 209 0.75 # 70 # 849 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.368 6_1 - 260 ResIII PF04851.10 184 0.00012 14.2 0.0 1 2 1.1e-05 0.0007 11.7 0.0 22 70 90 155 49 171 0.72 # 70 # 849 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.368 6_1 - 260 ResIII PF04851.10 184 0.00012 14.2 0.0 2 2 0.024 1.5 0.8 0.0 143 163 166 186 141 210 0.58 # 70 # 849 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.368 1_12 - 383 Methyltransf_31 PF13847.1 152 4.5e-05 15.4 0.1 1 1 1.4e-06 8.8e-05 14.4 0.1 2 78 181 256 180 290 0.76 # 9676 # 10824 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 6_1 - 260 RNA_helicase PF00910.17 107 2.4e-06 20.0 0.0 1 1 1.4e-07 8.8e-06 18.2 0.0 1 77 111 198 111 211 0.84 # 70 # 849 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.368 1_12 - 383 TrkA_N PF02254.13 116 0.00036 12.9 0.1 1 1 9.4e-06 0.00061 12.1 0.1 1 50 186 237 186 295 0.70 # 9676 # 10824 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_12 - 383 AlaDh_PNT_C PF01262.16 168 0.00028 12.8 0.1 1 1 1.1e-05 0.00071 11.5 0.1 21 60 184 224 174 242 0.72 # 9676 # 10824 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_15 - 127 AAA_24 PF13479.1 213 0.00035 12.5 0.1 1 1 7.9e-06 0.00051 11.9 0.1 3 22 26 45 24 51 0.85 # 13371 # 13751 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 6_1 - 260 AAA_25 PF13481.1 194 4.3e-05 15.2 0.0 1 1 1.3e-06 8.7e-05 14.3 0.0 28 63 103 139 85 177 0.82 # 70 # 849 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.368 6_1 - 260 AAA_5 PF07728.9 139 0.00019 13.5 0.3 1 2 0.0042 0.27 3.2 0.0 69 94 33 58 12 85 0.81 # 70 # 849 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.368 6_1 - 260 AAA_5 PF07728.9 139 0.00019 13.5 0.3 2 2 0.00025 0.016 7.2 0.0 1 17 110 126 110 137 0.90 # 70 # 849 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.368 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/5d0023d5-daf9-4388-befe-0c67ec874676 # Target file: checkm_output/bins/pGCA_000438705.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000438705.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/5d0023d5-daf9-4388-befe-0c67ec874676 checkm_output/bins/pGCA_000438705.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:41:14 2020 # [ok]