# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 256 MipZ PF09140.6 261 3.9e-10 30.6 0.2 1 1 5.3e-11 1.8e-09 28.4 0.2 3 132 6 156 4 201 0.65 # 403 # 1170 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.374 1_1 - 256 YhjQ PF06564.7 244 1.3e-08 25.8 0.2 1 1 6e-10 2e-08 25.2 0.2 4 157 6 162 3 183 0.80 # 403 # 1170 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.374 1_33 - 246 Usp PF00582.21 140 0.0074 7.9 6.8 1 2 0.00013 0.0046 8.6 1.3 17 82 18 85 15 99 0.84 # 27959 # 28696 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_33 - 246 Usp PF00582.21 140 0.0074 7.9 6.8 2 2 0.013 0.43 2.2 0.4 59 101 194 240 150 243 0.70 # 27959 # 28696 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_1 - 256 SRP54 PF00448.17 196 3.2e-05 14.8 0.1 1 2 1.4e-05 0.00049 10.9 0.0 11 38 14 42 6 46 0.92 # 403 # 1170 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.374 1_1 - 256 SRP54 PF00448.17 196 3.2e-05 14.8 0.1 2 2 0.01 0.36 1.6 0.0 123 170 163 210 105 228 0.73 # 403 # 1170 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.374 1_1 - 256 ArsA_ATPase PF02374.10 305 4.4e-07 20.5 0.0 1 2 4.1e-08 1.4e-06 18.9 0.0 9 46 12 50 5 88 0.86 # 403 # 1170 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.374 1_1 - 256 ArsA_ATPase PF02374.10 305 4.4e-07 20.5 0.0 2 2 0.052 1.8 -1.2 0.0 125 137 121 133 98 206 0.75 # 403 # 1170 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.374 1_1 - 256 Fer4_NifH PF00142.13 273 1.9e-11 35.0 0.8 1 2 5.3e-08 1.8e-06 18.6 0.2 7 61 11 64 5 85 0.79 # 403 # 1170 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.374 1_1 - 256 Fer4_NifH PF00142.13 273 1.9e-11 35.0 0.8 2 2 6.8e-07 2.3e-05 15.0 0.0 142 246 145 251 137 255 0.77 # 403 # 1170 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.374 1_1 - 256 CbiA PF01656.18 195 4.1e-38 122.1 1.0 1 1 1.4e-39 4.8e-38 121.9 1.0 1 194 6 221 6 222 0.80 # 403 # 1170 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.374 1_24 - 228 HI0933_like PF03486.9 409 0.00021 11.1 0.0 1 1 1e-05 0.00035 10.4 0.0 287 363 125 199 86 211 0.74 # 19659 # 20342 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 1_1 - 256 AAA_31 PF13614.1 157 5.4e-12 37.3 0.4 1 1 2.9e-13 1e-11 36.4 0.4 3 152 6 156 5 159 0.81 # 403 # 1170 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.374 1_1 - 256 ArgK PF03308.11 267 0.0002 11.6 0.0 1 1 1e-05 0.00034 10.8 0.0 39 97 14 73 5 78 0.80 # 403 # 1170 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.374 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/d1bd85f2-263b-4fbb-b6ae-c700ffecafad # Target file: checkm_output/bins/pGCA_000418515.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000418515.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d1bd85f2-263b-4fbb-b6ae-c700ffecafad checkm_output/bins/pGCA_000418515.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:41:13 2020 # [ok]