# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 627 ABC_ATPase PF09818.4 448 6.6e-07 20.3 0.3 1 1 1.9e-08 1.1e-06 19.5 0.3 298 393 497 585 482 590 0.89 # 4143 # 6023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.263 1_18 - 40 NmrA PF05368.8 233 7.7e-08 24.0 0.0 1 1 2.7e-09 8.1e-08 23.9 0.0 2 33 6 37 5 39 0.95 # 18478 # 18597 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_17 - 286 NmrA PF05368.8 233 0.00017 13.0 0.3 1 1 1.1e-05 0.00032 12.1 0.0 54 103 2 62 1 112 0.88 # 17578 # 18435 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.334 1_5 - 627 AAA_22 PF13401.1 131 0.00036 12.9 0.2 1 1 0.00018 0.011 8.1 0.2 4 63 412 467 409 587 0.57 # 4143 # 6023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.263 1_9 - 371 DUF1611 PF07755.6 301 0.00039 11.2 0.0 1 1 1.1e-05 0.00066 10.5 0.0 6 147 41 184 38 187 0.86 # 9475 # 10587 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.245 1_5 - 627 AAA_17 PF13207.1 121 6e-05 16.0 0.0 1 1 2.7e-06 0.00016 14.7 0.0 2 32 415 442 414 554 0.80 # 4143 # 6023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.263 1_5 - 627 SMC_N PF02463.14 220 8.8e-08 23.7 0.0 1 1 6.8e-09 4e-07 21.6 0.0 135 208 286 590 64 597 0.77 # 4143 # 6023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.263 1_5 - 627 AAA_16 PF13191.1 185 4e-05 15.8 0.0 1 1 2.4e-06 0.00014 14.0 0.0 15 175 402 566 396 577 0.56 # 4143 # 6023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.263 1_5 - 627 AAA_23 PF13476.1 202 0.0056 9.1 13.0 1 3 0.079 4.7 -0.4 0.3 73 116 7 46 3 80 0.62 # 4143 # 6023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.263 1_5 - 627 AAA_23 PF13476.1 202 0.0056 9.1 13.0 2 3 0.00065 0.038 6.4 0.5 107 155 231 279 125 376 0.76 # 4143 # 6023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.263 1_5 - 627 AAA_23 PF13476.1 202 0.0056 9.1 13.0 3 3 8.4e-05 0.005 9.3 1.1 14 35 404 428 385 429 0.79 # 4143 # 6023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.263 1_18 - 40 adh_short PF00106.20 167 3.6e-06 19.1 0.0 1 1 1.2e-07 3.7e-06 19.1 0.0 3 27 5 29 3 38 0.84 # 18478 # 18597 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_17 - 286 adh_short PF00106.20 167 0.00011 14.4 0.0 1 1 6.9e-06 0.0002 13.4 0.0 96 139 23 66 4 73 0.79 # 17578 # 18435 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.334 1_17 - 286 Polysacc_synt_2 PF02719.10 294 1.7e-09 29.1 0.6 1 2 2.6e-10 7.7e-09 26.9 0.1 65 131 2 65 1 79 0.88 # 17578 # 18435 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.334 1_17 - 286 Polysacc_synt_2 PF02719.10 294 1.7e-09 29.1 0.6 2 2 0.044 1.3 -0.1 0.0 226 252 148 173 138 202 0.78 # 17578 # 18435 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.334 1_18 - 40 Polysacc_synt_2 PF02719.10 294 0.00025 12.1 0.0 1 1 8.3e-06 0.00025 12.1 0.0 2 22 6 26 5 37 0.88 # 18478 # 18597 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 3_4 - 335 Methyltransf_25 PF13649.1 101 2.7e-05 16.7 0.0 1 1 1.4e-06 8.4e-05 15.1 0.0 26 89 242 305 209 313 0.73 # 2311 # 3315 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.305 1_5 - 627 AAA_29 PF13555.1 62 0.00018 13.2 0.2 1 1 6.7e-06 0.0004 12.1 0.2 17 39 407 428 400 429 0.84 # 4143 # 6023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.263 1_18 - 40 KR PF08659.5 181 6.2e-05 14.9 0.0 1 1 2.3e-06 6.7e-05 14.8 0.0 4 25 6 27 4 35 0.91 # 18478 # 18597 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_17 - 286 KR PF08659.5 181 0.00015 13.6 0.0 1 1 9.3e-06 0.00027 12.8 0.0 102 142 28 68 14 76 0.84 # 17578 # 18435 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.334 1_5 - 627 DUF258 PF03193.11 161 7.3e-06 17.4 0.0 1 1 3e-07 1.8e-05 16.2 0.0 16 55 392 432 377 468 0.80 # 4143 # 6023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.263 1_5 - 627 ABC_tran PF00005.22 137 2.4e-35 114.0 0.1 1 1 1e-36 6e-35 112.7 0.0 3 137 404 551 402 551 0.89 # 4143 # 6023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.263 1_5 - 627 ATP-synt_ab PF00006.20 215 8.6e-05 14.2 0.0 1 1 2.9e-06 0.00017 13.3 0.0 4 36 401 433 399 493 0.81 # 4143 # 6023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.263 1_17 - 286 NAD_binding_4 PF07993.7 249 4e-13 41.0 0.0 1 1 1.8e-14 5.4e-13 40.5 0.0 76 201 1 128 1 172 0.77 # 17578 # 18435 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.334 1_18 - 40 NAD_binding_4 PF07993.7 249 1e-06 20.0 0.0 1 1 3.4e-08 1e-06 20.0 0.0 1 31 7 35 7 39 0.86 # 18478 # 18597 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_18 - 40 RmlD_sub_bind PF04321.12 287 8.8e-06 16.9 0.0 1 1 1.5e-07 8.8e-06 16.9 0.0 4 32 6 34 1 38 0.86 # 18478 # 18597 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_17 - 286 NAD_binding_10 PF13460.1 183 1e-11 37.3 0.0 1 1 1e-12 2.9e-11 35.8 0.0 50 180 2 167 1 170 0.69 # 17578 # 18435 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.334 1_18 - 40 NAD_binding_10 PF13460.1 183 2e-09 29.8 0.1 1 1 7.3e-11 2.1e-09 29.7 0.1 2 31 6 35 6 39 0.95 # 18478 # 18597 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_17 - 286 3Beta_HSD PF01073.14 280 1.3e-19 62.0 0.2 1 2 2.8e-20 8.3e-19 59.4 0.1 56 155 2 100 1 110 0.94 # 17578 # 18435 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.334 1_17 - 286 3Beta_HSD PF01073.14 280 1.3e-19 62.0 0.2 2 2 0.028 0.82 0.4 0.0 235 256 167 187 146 209 0.77 # 17578 # 18435 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.334 1_18 - 40 3Beta_HSD PF01073.14 280 4.9e-07 20.8 0.0 1 1 1.7e-08 4.9e-07 20.8 0.0 1 28 6 31 6 39 0.80 # 18478 # 18597 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 2_25 - 202 Methyltransf_31 PF13847.1 152 0.00039 12.2 3.9 1 1 1.1e-05 0.00062 11.5 3.8 26 112 2 85 1 158 0.76 # 18089 # 18694 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.244 1_17 - 286 Epimerase PF01370.16 236 2.2e-17 55.4 0.0 1 1 2.6e-18 7.6e-17 53.6 0.0 53 175 2 128 1 180 0.83 # 17578 # 18435 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.334 1_18 - 40 Epimerase PF01370.16 236 8.8e-07 20.7 0.0 1 1 3e-08 8.8e-07 20.7 0.0 2 30 6 34 5 39 0.84 # 18478 # 18597 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 1_9 - 371 DapB_N PF01113.15 124 0.00033 12.8 0.0 1 1 1.1e-05 0.00064 11.8 0.0 24 115 25 121 17 131 0.74 # 9475 # 10587 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.245 2_25 - 202 TrkA_N PF02254.13 116 2.7e-06 19.6 0.6 1 1 1.1e-07 6.3e-06 18.4 0.1 22 96 5 82 1 102 0.84 # 18089 # 18694 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.244 1_5 - 627 APS_kinase PF01583.15 157 0.00039 12.3 0.0 1 1 1.8e-05 0.001 10.9 0.0 2 41 412 450 411 470 0.79 # 4143 # 6023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.263 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/8739a568-7ee4-4e81-8974-939abe43720f # Target file: checkm_output/bins/pGCA_000389635.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000389635.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/8739a568-7ee4-4e81-8974-939abe43720f checkm_output/bins/pGCA_000389635.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:41:06 2020 # [ok]