# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_21 - 193 RuvB_C PF05491.8 76 0.0002 12.2 0.4 1 2 0.038 1.1 0.2 0.1 55 67 121 133 117 139 0.82 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_21 - 193 RuvB_C PF05491.8 76 0.0002 12.2 0.4 2 2 8.6e-05 0.0024 8.7 0.0 6 43 145 178 142 182 0.86 # 15831 # 16409 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_3 - 225 AAA_17 PF13207.1 121 0.00017 13.6 0.7 1 1 9.5e-06 0.00027 12.9 0.7 23 112 24 121 19 180 0.80 # 3090 # 3764 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.326 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/e5848b6b-bf5f-40be-8678-34aa95ffb603 # Target file: checkm_output/bins/pGCA_000383005.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000383005.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e5848b6b-bf5f-40be-8678-34aa95ffb603 checkm_output/bins/pGCA_000383005.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:41:05 2020 # [ok]