# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_2 - 245 Methyltransf_12 PF08242.7 99 0.00028 13.0 0.2 1 1 1.9e-05 0.00078 11.6 0.0 2 56 36 88 35 114 0.83 # 368 # 1102 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 2_3 - 1025 TIGR00392 TIGR00392 861 2.9e-288 949.9 16.5 1 1 9.5e-290 3.8e-288 949.5 16.5 10 857 7 825 1 828 0.97 # 848 # 3922 # -1 # ID=2_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 3_2 - 245 RrnaAD PF00398.15 262 1e-75 245.7 5.1 1 1 2.8e-77 1.1e-75 245.6 5.1 1 262 1 244 1 244 0.97 # 368 # 1102 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 1_19 - 131 SSB PF00436.20 104 1.6e-25 80.7 0.1 1 1 5.1e-27 2.1e-25 80.3 0.1 1 87 2 82 2 94 0.93 # 14248 # 14640 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.288 3_2 - 245 Methyltransf_18 PF12847.2 112 7.8e-08 24.6 0.0 1 1 2.7e-09 1.1e-07 24.1 0.0 3 71 32 108 30 152 0.74 # 368 # 1102 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 1_27 - 671 DUF87 PF01935.12 229 1.8e-11 35.9 5.0 1 2 0.01 0.42 1.9 0.4 121 191 103 185 53 197 0.66 # 22768 # 24780 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 1_27 - 671 DUF87 PF01935.12 229 1.8e-11 35.9 5.0 2 2 4.4e-13 1.8e-11 35.9 5.0 19 209 253 454 237 485 0.68 # 22768 # 24780 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 1_27 - 671 AAA_22 PF13401.1 131 8.5e-05 14.3 0.0 1 2 2.8e-05 0.0011 10.7 0.0 7 34 260 286 254 398 0.82 # 22768 # 24780 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 1_27 - 671 AAA_22 PF13401.1 131 8.5e-05 14.3 0.0 2 2 0.065 2.6 -0.2 0.0 81 101 493 516 470 554 0.76 # 22768 # 24780 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 3_2 - 245 Methyltransf_11 PF08241.7 95 2.3e-06 19.7 0.0 1 1 1.1e-07 4.4e-06 18.8 0.0 2 60 36 94 35 99 0.91 # 368 # 1102 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 1_17 - 180 AAA_17 PF13207.1 121 1.1e-06 21.1 0.5 1 1 6.7e-08 1.3e-06 20.8 0.5 23 113 24 122 18 174 0.84 # 13447 # 13986 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.335 2_1 - 116 AAA_17 PF13207.1 121 6e-05 15.5 0.5 1 1 3.6e-06 7.1e-05 15.3 0.5 23 102 24 110 17 116 0.79 # 3 # 350 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_27 - 671 AAA_16 PF13191.1 185 5.1e-05 14.9 0.0 1 1 1.2e-05 0.00047 11.8 0.0 25 52 258 293 244 532 0.74 # 22768 # 24780 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 1_27 - 671 AAA_18 PF13238.1 129 0.00016 13.7 2.0 1 2 3.7e-05 0.0015 10.5 1.1 2 91 261 398 261 402 0.63 # 22768 # 24780 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 1_27 - 671 AAA_18 PF13238.1 129 0.00016 13.7 2.0 2 2 0.05 2 0.4 0.0 43 90 402 452 383 469 0.61 # 22768 # 24780 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 3_2 - 245 Methyltransf_25 PF13649.1 101 0.00027 12.9 0.0 1 1 1.5e-05 0.00059 11.9 0.0 1 69 34 96 34 121 0.83 # 368 # 1102 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 1_27 - 671 AAA_14 PF13173.1 128 0.0018 9.8 11.0 1 3 8.7e-05 0.0035 8.9 0.8 2 40 257 294 256 402 0.78 # 22768 # 24780 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 1_27 - 671 AAA_14 PF13173.1 128 0.0018 9.8 11.0 2 3 0.003 0.12 3.9 0.9 16 91 450 531 446 554 0.66 # 22768 # 24780 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 1_27 - 671 AAA_14 PF13173.1 128 0.0018 9.8 11.0 3 3 0.046 1.8 0.1 0.0 28 57 608 636 592 653 0.73 # 22768 # 24780 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 2_3 - 1025 tRNA-synt_1 PF00133.17 601 1e-242 797.9 4.6 1 1 4.6e-244 1.8e-242 797.1 4.6 2 601 12 625 11 625 0.99 # 848 # 3922 # -1 # ID=2_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_3 - 1025 tRNA-synt_1g PF09334.6 391 9.2e-26 81.9 7.9 1 4 3.1e-12 1.2e-10 32.1 0.2 10 135 44 188 41 199 0.75 # 848 # 3922 # -1 # ID=2_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_3 - 1025 tRNA-synt_1g PF09334.6 391 9.2e-26 81.9 7.9 2 4 0.03 1.2 -0.8 0.0 47 118 303 374 299 379 0.90 # 848 # 3922 # -1 # ID=2_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_3 - 1025 tRNA-synt_1g PF09334.6 391 9.2e-26 81.9 7.9 3 4 2.1e-05 0.00083 9.6 0.2 164 238 377 450 364 461 0.80 # 848 # 3922 # -1 # ID=2_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_3 - 1025 tRNA-synt_1g PF09334.6 391 9.2e-26 81.9 7.9 4 4 1e-14 4e-13 40.3 0.3 244 387 508 644 497 646 0.75 # 848 # 3922 # -1 # ID=2_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_27 - 671 AAA_29 PF13555.1 62 1.9e-05 15.8 0.2 1 1 1.8e-06 7e-05 14.0 0.1 19 39 256 273 243 278 0.81 # 22768 # 24780 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 2_3 - 1025 tRNA-synt_1_2 PF13603.1 185 5.4e-05 14.1 0.0 1 1 4.4e-06 0.00018 12.5 0.0 103 144 297 338 199 368 0.71 # 848 # 3922 # -1 # ID=2_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 3_2 - 245 PCMT PF01135.14 210 1.4e-06 19.6 0.0 1 1 1e-07 4.2e-06 18.0 0.0 53 126 10 80 3 86 0.86 # 368 # 1102 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 1_27 - 671 DUF258 PF03193.11 161 2.1e-05 15.4 1.2 1 2 0.027 1.1 0.0 0.1 70 119 205 254 194 259 0.81 # 22768 # 24780 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 1_27 - 671 DUF258 PF03193.11 161 2.1e-05 15.4 1.2 2 2 1.9e-06 7.5e-05 13.6 0.6 32 56 255 278 232 357 0.74 # 22768 # 24780 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 1_21 - 547 TraG-D_C PF12696.2 128 6.1e-38 121.2 0.1 1 1 1.5e-39 6.1e-38 121.2 0.1 1 127 289 413 289 414 0.90 # 15652 # 17292 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.298 3_2 - 245 Methyltransf_26 PF13659.1 117 5.7e-09 27.7 0.0 1 1 1.9e-10 7.7e-09 27.3 0.0 2 81 32 105 31 148 0.89 # 368 # 1102 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 1_27 - 671 FtsK_SpoIIIE PF01580.13 205 0.00011 13.3 0.0 1 1 5.8e-06 0.00023 12.2 0.0 35 78 249 293 229 299 0.78 # 22768 # 24780 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 3_2 - 245 MTS PF05175.9 170 1.2e-05 16.3 0.0 1 1 4.8e-07 1.9e-05 15.7 0.0 25 113 24 109 14 125 0.83 # 368 # 1102 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 2_3 - 1025 tRNA-synt_1f PF01921.13 360 7.3e-09 26.3 0.0 1 2 0.013 0.53 0.4 0.0 8 59 18 70 14 82 0.79 # 848 # 3922 # -1 # ID=2_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_3 - 1025 tRNA-synt_1f PF01921.13 360 7.3e-09 26.3 0.0 2 2 2.2e-09 8.7e-08 22.7 0.0 273 335 576 638 539 668 0.72 # 848 # 3922 # -1 # ID=2_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_27 - 671 ABC_tran PF00005.22 137 0.00028 12.8 3.3 1 1 5e-05 0.002 10.1 3.3 12 51 258 299 250 599 0.82 # 22768 # 24780 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 2_3 - 1025 tRNA-synt_1e PF01406.14 301 7.4e-08 23.4 0.0 1 2 0.019 0.77 0.3 0.0 9 48 34 73 27 75 0.83 # 848 # 3922 # -1 # ID=2_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_3 - 1025 tRNA-synt_1e PF01406.14 301 7.4e-08 23.4 0.0 2 2 2.7e-08 1.1e-06 19.5 0.0 242 299 573 632 556 634 0.75 # 848 # 3922 # -1 # ID=2_3;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_27 - 671 AAA_10 PF12846.2 304 8e-57 184.5 2.4 1 1 7.5e-58 1.5e-56 183.6 2.4 1 301 257 584 257 586 0.91 # 22768 # 24780 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 1_21 - 547 AAA_10 PF12846.2 304 3.4e-09 28.1 0.1 1 1 5.3e-10 1.1e-08 26.5 0.1 1 300 31 368 31 371 0.69 # 15652 # 17292 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.298 3_2 - 245 NodS PF05401.6 201 1.2e-05 16.4 0.0 1 1 4.8e-07 1.9e-05 15.7 0.0 44 107 31 94 9 115 0.84 # 368 # 1102 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 3_2 - 245 Methyltransf_31 PF13847.1 152 7.3e-06 17.2 3.0 1 1 2.9e-07 1.2e-05 16.6 2.6 2 76 29 98 28 220 0.73 # 368 # 1102 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 3_2 - 245 DOT1 PF08123.8 205 1.2e-05 16.3 1.2 1 2 1.8e-06 7.4e-05 13.7 0.0 29 91 17 77 13 117 0.83 # 368 # 1102 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 3_2 - 245 DOT1 PF08123.8 205 1.2e-05 16.3 1.2 2 2 0.016 0.62 0.9 0.6 78 133 180 229 169 236 0.57 # 368 # 1102 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 1_21 - 547 TrwB_AAD_bind PF10412.4 386 1.8e-25 80.9 0.0 1 2 1.2e-05 0.00023 11.4 0.0 12 121 28 144 23 171 0.79 # 15652 # 17292 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.298 1_21 - 547 TrwB_AAD_bind PF10412.4 386 1.8e-25 80.9 0.0 2 2 1.3e-22 2.5e-21 67.2 0.0 219 377 260 424 207 431 0.86 # 15652 # 17292 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.298 1_27 - 671 TrwB_AAD_bind PF10412.4 386 1.5e-09 28.5 1.0 1 2 9.5e-07 1.9e-05 15.0 0.0 10 61 252 305 244 356 0.78 # 22768 # 24780 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 1_27 - 671 TrwB_AAD_bind PF10412.4 386 1.5e-09 28.5 1.0 2 2 1.7e-05 0.00034 10.8 0.0 237 316 495 577 480 603 0.75 # 22768 # 24780 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 1_19 - 131 tRNA_anti_2 PF13742.1 99 0.00021 12.8 0.0 1 1 6.8e-06 0.00027 12.4 0.0 37 87 23 79 9 88 0.79 # 14248 # 14640 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.288 1_21 - 547 T4SS-DNA_transf PF02534.9 469 5.3e-149 488.3 4.4 1 1 1.3e-150 5.3e-149 488.3 4.4 3 468 3 462 1 463 0.97 # 15652 # 17292 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.298 3_2 - 245 TIGR00755 TIGR00755 256 3.3e-49 158.7 1.7 1 1 1.1e-50 4.2e-49 158.4 1.7 6 254 7 237 3 239 0.88 # 368 # 1102 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 1_23 - 701 TIGR00615 TIGR00615 196 9.1e-07 19.8 0.1 1 1 5.8e-08 2.3e-06 18.5 0.1 123 171 89 138 80 156 0.86 # 17769 # 19871 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 3_2 - 245 Methyltransf_23 PF13489.1 161 2e-05 15.9 0.0 1 1 1.4e-06 5.4e-05 14.6 0.0 11 67 17 78 8 131 0.73 # 368 # 1102 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 1_19 - 131 tRNA_anti-codon PF01336.20 75 9e-06 17.2 0.1 1 1 3.4e-07 1.4e-05 16.6 0.1 23 65 39 81 9 99 0.82 # 14248 # 14640 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.288 3_2 - 245 Methyltransf_4 PF02390.12 197 6.6e-06 16.9 1.8 1 2 1.7e-07 6.9e-06 16.8 0.3 20 97 31 101 4 104 0.77 # 368 # 1102 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 3_2 - 245 Methyltransf_4 PF02390.12 197 6.6e-06 16.9 1.8 2 2 0.089 3.6 -1.8 0.1 136 159 187 207 166 229 0.63 # 368 # 1102 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.254 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/adcbd8e8-bf6b-4e50-8181-1162f5c4e063 # Target file: checkm_output/bins/pGCA_000382985.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000382985.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/adcbd8e8-bf6b-4e50-8181-1162f5c4e063 checkm_output/bins/pGCA_000382985.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:41:05 2020 # [ok]