# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_6 - 193 RuvB_C PF05491.8 76 0.00024 12.2 0.4 1 2 0.038 1.3 0.2 0.1 55 67 121 133 117 139 0.82 # 6771 # 7349 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_6 - 193 RuvB_C PF05491.8 76 0.00024 12.2 0.4 2 2 8.6e-05 0.003 8.7 0.0 6 43 145 178 142 182 0.86 # 6771 # 7349 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_30 - 548 3HCDH_N PF02737.13 180 8.4e-06 17.0 0.1 1 1 2.4e-07 8.4e-06 17.0 0.1 2 85 253 339 252 341 0.81 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_30 - 548 GIDA PF01134.17 392 1.4e-06 18.8 5.2 1 3 3.9e-08 1.4e-06 18.8 5.2 1 150 87 222 87 255 0.69 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_30 - 548 GIDA PF01134.17 392 1.4e-06 18.8 5.2 2 3 0.012 0.4 0.8 0.8 98 170 294 369 285 385 0.57 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_30 - 548 GIDA PF01134.17 392 1.4e-06 18.8 5.2 3 3 0.019 0.68 0.0 0.1 346 384 371 410 366 417 0.67 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_30 - 548 Pyr_redox_2 PF07992.9 201 1.2e-41 134.2 0.0 1 1 1.7e-42 2.9e-41 133.0 0.0 1 197 87 390 87 394 0.93 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_35 - 252 Pyr_redox_2 PF07992.9 201 3.5e-09 28.2 0.3 1 2 0.0022 0.038 5.2 0.1 66 120 17 66 3 72 0.77 # 29467 # 30222 # -1 # ID=1_35;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.398 1_35 - 252 Pyr_redox_2 PF07992.9 201 3.5e-09 28.2 0.3 2 2 5.1e-08 8.9e-07 20.4 0.0 163 198 74 108 71 110 0.84 # 29467 # 30222 # -1 # ID=1_35;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.398 1_30 - 548 Usp PF00582.21 140 0.00029 12.5 0.1 1 1 2.3e-05 0.00082 11.0 0.1 69 112 36 95 18 111 0.72 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_30 - 548 NAD_binding_7 PF13241.1 103 3.2e-05 15.6 0.1 1 2 0.00053 0.019 6.7 0.0 10 38 88 116 84 177 0.90 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_30 - 548 NAD_binding_7 PF13241.1 103 3.2e-05 15.6 0.1 2 2 0.00075 0.026 6.3 0.0 8 45 251 307 244 360 0.56 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_27 - 225 AAA_17 PF13207.1 121 1.5e-06 20.5 0.9 1 1 2.3e-07 3.9e-06 19.1 1.0 23 111 24 120 20 134 0.83 # 23171 # 23845 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_24 - 225 AAA_17 PF13207.1 121 0.00021 13.6 0.7 1 1 1.9e-05 0.00033 12.9 0.7 23 112 24 121 19 180 0.80 # 19416 # 20090 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_30 - 548 HI0933_like PF03486.9 409 6.6e-09 26.0 4.6 1 2 6.8e-06 0.00012 12.0 1.4 1 34 86 119 86 127 0.89 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_30 - 548 HI0933_like PF03486.9 409 6.6e-09 26.0 4.6 2 2 1.9e-06 3.2e-05 13.9 0.0 75 165 258 349 239 354 0.82 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_35 - 252 HI0933_like PF03486.9 409 3.8e-06 17.0 0.0 1 1 3.4e-07 6e-06 16.3 0.0 110 161 10 61 4 105 0.83 # 29467 # 30222 # -1 # ID=1_35;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.398 1_30 - 548 FAD_binding_2 PF00890.19 417 3e-09 27.5 7.0 1 3 4.8e-10 1.7e-08 25.1 2.7 1 36 87 121 87 128 0.91 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_30 - 548 FAD_binding_2 PF00890.19 417 3e-09 27.5 7.0 2 3 0.0019 0.068 3.3 0.1 141 204 291 351 251 366 0.76 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_30 - 548 FAD_binding_2 PF00890.19 417 3e-09 27.5 7.0 3 3 0.08 2.8 -2.0 0.0 374 402 360 390 356 397 0.77 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_30 - 548 Thi4 PF01946.12 230 0.00013 12.5 0.2 1 1 9.7e-06 0.00034 11.1 0.2 17 56 85 123 74 140 0.80 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_30 - 548 Pyr_redox_3 PF13738.1 203 1.7e-16 52.3 0.5 1 2 5.2e-13 1.8e-11 35.9 0.0 1 200 89 283 89 286 0.63 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_30 - 548 Pyr_redox_3 PF13738.1 203 1.7e-16 52.3 0.5 2 2 2e-06 6.9e-05 14.4 0.1 82 147 291 357 287 390 0.70 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_30 - 548 2-Hacid_dh_C PF02826.14 178 0.00023 11.7 0.3 1 3 0.077 2.7 -1.5 0.0 38 67 87 116 57 127 0.86 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_30 - 548 2-Hacid_dh_C PF02826.14 178 0.00023 11.7 0.3 2 3 4.5e-05 0.0016 9.0 0.0 37 70 251 284 237 304 0.83 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_30 - 548 2-Hacid_dh_C PF02826.14 178 0.00023 11.7 0.3 3 3 0.065 2.3 -1.3 0.0 47 108 293 355 291 373 0.62 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_30 - 548 XdhC_C PF13478.1 136 6.4e-05 14.7 0.0 1 1 4.7e-06 0.00016 13.4 0.0 1 49 253 302 253 321 0.79 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_30 - 548 Lycopene_cycl PF05834.7 374 2.4e-05 14.7 1.0 1 2 0.00031 0.011 6.0 0.4 1 33 87 117 87 120 0.91 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_30 - 548 Lycopene_cycl PF05834.7 374 2.4e-05 14.7 1.0 2 2 0.00016 0.0055 7.0 0.0 64 143 273 351 268 372 0.81 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_30 - 548 K_oxygenase PF13434.1 341 2.6e-10 31.1 1.5 1 3 0.0086 0.3 1.3 0.0 3 25 86 108 85 118 0.82 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_30 - 548 K_oxygenase PF13434.1 341 2.6e-10 31.1 1.5 2 3 8.3e-09 2.9e-07 21.0 0.0 140 232 205 290 190 302 0.83 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_30 - 548 K_oxygenase PF13434.1 341 2.6e-10 31.1 1.5 3 3 0.00033 0.012 5.9 0.2 119 160 310 351 294 385 0.66 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_30 - 548 UDPG_MGDP_dh_N PF03721.9 185 3.7e-05 14.6 0.0 1 1 2.5e-06 8.7e-05 13.4 0.0 2 39 252 289 251 354 0.75 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_30 - 548 FAD_oxidored PF12831.2 428 1e-12 39.2 1.3 1 2 1.3e-09 4.4e-08 23.9 0.3 1 45 87 130 87 195 0.80 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_30 - 548 FAD_oxidored PF12831.2 428 1e-12 39.2 1.3 2 2 1.1e-06 4e-05 14.2 0.0 78 147 281 347 240 349 0.74 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_30 - 548 DAO PF01266.19 358 1.9e-08 24.9 0.7 1 2 1e-06 3.6e-05 14.1 0.1 1 35 87 121 87 223 0.79 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_30 - 548 DAO PF01266.19 358 1.9e-08 24.9 0.7 2 2 3.3e-05 0.0011 9.2 0.1 152 205 296 352 253 444 0.78 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_30 - 548 Pyr_redox PF00070.22 80 4.6e-25 79.4 2.2 1 2 0.00015 0.0026 9.7 0.5 2 31 88 117 87 119 0.95 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_30 - 548 Pyr_redox PF00070.22 80 4.6e-25 79.4 2.2 2 2 5.7e-23 1e-21 68.7 0.1 1 72 252 323 252 334 0.93 # 25406 # 27049 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_35 - 252 Pyr_redox PF00070.22 80 3.3e-06 18.9 0.1 1 1 4.9e-07 8.6e-06 17.6 0.1 37 72 6 41 2 50 0.89 # 29467 # 30222 # -1 # ID=1_35;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.398 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/907f4c52-acfd-44a6-9c57-4cfcbc4b346c # Target file: checkm_output/bins/pGCA_000382965.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000382965.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/907f4c52-acfd-44a6-9c57-4cfcbc4b346c checkm_output/bins/pGCA_000382965.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:41:05 2020 # [ok]