# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_95 - 246 Eno-Rase_NADH_b PF12242.3 78 3.1e-05 16.8 1.3 1 1 8.2e-07 8.9e-05 15.3 1.3 38 66 6 32 2 41 0.81 # 91881 # 92618 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.673 1_64 - 218 Thymidylate_kin PF02223.12 186 1.2e-30 99.3 0.0 1 1 1.2e-32 1.3e-30 99.1 0.0 1 148 11 152 11 192 0.92 # 64441 # 65094 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.682 1_64 - 218 Rad17 PF03215.10 519 0.00016 13.4 0.0 1 1 1.9e-06 0.00021 13.0 0.0 47 71 8 32 1 46 0.81 # 64441 # 65094 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.682 1_21 - 386 MipZ PF09140.6 261 1.7e-12 40.0 0.0 1 2 3e-10 3.3e-08 25.9 0.0 2 40 118 156 117 166 0.90 # 22797 # 23954 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 1_21 - 386 MipZ PF09140.6 261 1.7e-12 40.0 0.0 2 2 5.6e-06 0.00061 11.9 0.0 78 114 222 258 203 267 0.76 # 22797 # 23954 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 1_21 - 386 YhjQ PF06564.7 244 3.3e-07 22.9 0.1 1 2 4.9e-08 5.4e-06 18.9 0.0 10 44 125 159 118 267 0.88 # 22797 # 23954 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 1_21 - 386 YhjQ PF06564.7 244 3.3e-07 22.9 0.1 2 2 0.012 1.3 1.3 0.0 206 233 354 381 342 385 0.87 # 22797 # 23954 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 1_26 - 245 Methyltransf_18 PF12847.2 112 8.4e-12 38.8 0.0 1 1 1.1e-13 1.2e-11 38.3 0.0 2 109 53 151 52 154 0.90 # 32108 # 32842 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.688 1_94 - 1144 UvrD_C_2 PF13538.1 104 2.2e-09 30.5 0.0 1 1 4.5e-11 4.9e-09 29.3 0.0 38 103 675 741 647 742 0.83 # 88137 # 91568 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.702 1_41 - 516 DUF87 PF01935.12 229 0.00035 13.4 0.0 1 1 6.7e-06 0.00073 12.4 0.0 28 68 135 175 130 266 0.77 # 47897 # 49444 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.714 1_64 - 218 AAA_22 PF13401.1 131 4.5e-07 23.1 0.0 1 1 7.9e-08 2.1e-06 20.9 0.0 5 61 7 55 2 185 0.82 # 64441 # 65094 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.682 1_25 - 1399 AAA_22 PF13401.1 131 0.00018 14.7 4.0 1 1 1e-05 0.00028 14.1 0.3 8 128 630 738 622 740 0.72 # 27257 # 31453 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.714 1_27 - 648 AAA_22 PF13401.1 131 0.00037 13.7 0.0 1 1 7e-05 0.0019 11.4 0.0 5 25 431 451 427 476 0.91 # 32923 # 34866 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.694 1_94 - 1144 AAA_22 PF13401.1 131 0.00065 12.9 0.0 1 2 0.0084 0.23 4.7 0.0 5 30 251 276 248 310 0.83 # 88137 # 91568 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.702 1_94 - 1144 AAA_22 PF13401.1 131 0.00065 12.9 0.0 2 2 0.007 0.19 4.9 0.0 89 108 525 543 486 560 0.77 # 88137 # 91568 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.702 1_64 - 218 DUF1611 PF07755.6 301 0.00033 12.3 0.0 1 2 7.8e-05 0.0085 7.7 0.0 124 145 17 38 10 48 0.90 # 64441 # 65094 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.682 1_64 - 218 DUF1611 PF07755.6 301 0.00033 12.3 0.0 2 2 0.0029 0.32 2.6 0.0 242 280 158 196 131 206 0.85 # 64441 # 65094 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.682 1_26 - 245 Methyltransf_11 PF08241.7 95 9.2e-10 32.0 0.0 1 1 1.3e-11 1.4e-09 31.4 0.0 1 95 57 151 57 151 0.91 # 32108 # 32842 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.688 1_64 - 218 PRK PF00485.13 194 0.001 11.7 0.0 1 1 2.3e-05 0.0025 10.4 0.0 1 29 8 36 8 54 0.83 # 64441 # 65094 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.682 1_21 - 386 SRP54 PF00448.17 196 0.00072 12.0 0.0 1 2 0.011 1.2 1.5 0.0 61 95 29 63 18 74 0.79 # 22797 # 23954 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 1_21 - 386 SRP54 PF00448.17 196 0.00072 12.0 0.0 2 2 0.00014 0.015 7.7 0.0 11 38 127 154 117 158 0.86 # 22797 # 23954 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 1_27 - 648 AAA_15 PF13175.1 415 0.0007 11.7 0.0 1 2 2.4e-05 0.0026 9.8 0.0 20 42 427 450 398 475 0.81 # 32923 # 34866 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.694 1_27 - 648 AAA_15 PF13175.1 415 0.0007 11.7 0.0 2 2 0.044 4.8 -1.0 0.0 372 408 565 600 556 601 0.85 # 32923 # 34866 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.694 1_64 - 218 AAA_17 PF13207.1 121 3.7e-07 24.1 0.0 1 1 1.5e-08 5.3e-07 23.5 0.0 2 29 9 38 8 143 0.73 # 64441 # 65094 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.682 1_41 - 516 AAA_17 PF13207.1 121 2.7e-05 18.0 0.0 1 1 1.4e-06 4.9e-05 17.2 0.0 2 32 133 166 132 251 0.84 # 47897 # 49444 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.714 1_36 - 296 AAA_17 PF13207.1 121 0.00088 13.2 0.0 1 1 3.5e-05 0.0013 12.6 0.0 9 32 27 53 21 163 0.85 # 42461 # 43348 # 1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.739 1_27 - 648 AAA_21 PF13304.1 303 3.6e-06 20.1 0.0 1 2 3.8e-07 4.2e-05 16.6 0.0 2 22 433 453 432 469 0.89 # 32923 # 34866 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.694 1_27 - 648 AAA_21 PF13304.1 303 3.6e-06 20.1 0.0 2 2 0.02 2.2 1.1 0.0 236 293 544 598 543 601 0.70 # 32923 # 34866 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.694 1_27 - 648 Miro PF08477.8 119 0.00045 13.8 0.0 1 1 8.1e-06 0.00089 12.8 0.0 2 25 433 456 432 479 0.86 # 32923 # 34866 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.694 1_64 - 218 MobB PF03205.9 140 2.7e-05 17.0 0.0 1 1 9.2e-07 5e-05 16.1 0.0 3 31 9 37 7 43 0.90 # 64441 # 65094 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.682 1_27 - 648 MobB PF03205.9 140 0.00038 13.2 0.0 1 1 1.4e-05 0.00074 12.3 0.0 2 24 432 454 431 483 0.77 # 32923 # 34866 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.694 1_11 - 974 Helicase_C PF00271.26 78 0.00011 15.1 0.0 1 1 4.9e-06 0.00053 12.9 0.0 34 77 651 698 630 699 0.81 # 8314 # 11235 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.686 1_21 - 386 ArsA_ATPase PF02374.10 305 4.3e-11 35.4 0.0 1 2 9.9e-12 1.1e-09 30.8 0.0 2 45 118 161 117 173 0.87 # 22797 # 23954 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 1_21 - 386 ArsA_ATPase PF02374.10 305 4.3e-11 35.4 0.0 2 2 0.0043 0.46 2.4 0.0 123 137 237 253 199 259 0.81 # 22797 # 23954 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 1_94 - 1144 PhoH PF02562.11 205 9.8e-06 17.9 0.0 1 2 0.0049 0.54 2.4 0.0 18 47 249 278 234 304 0.75 # 88137 # 91568 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.702 1_94 - 1144 PhoH PF02562.11 205 9.8e-06 17.9 0.0 2 2 3.3e-06 0.00036 12.8 0.0 123 162 527 566 523 593 0.88 # 88137 # 91568 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.702 1_100 - 80 TIGR00810 TIGR00810 73 0.0002 14.2 3.5 1 1 2.3e-06 0.00025 13.9 3.5 5 46 22 62 19 70 0.64 # 97165 # 97404 # 1 # ID=1_100;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.708 1_26 - 245 CMAS PF02353.15 273 4.1e-07 22.3 0.0 1 1 4.9e-09 5.3e-07 21.9 0.0 62 163 52 150 45 162 0.85 # 32108 # 32842 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.688 1_21 - 386 Methyltransf_24 PF13578.1 106 0.00019 15.3 0.0 1 1 5.7e-06 0.00063 13.6 0.0 7 81 130 254 126 270 0.69 # 22797 # 23954 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 1_27 - 648 SMC_N PF02463.14 220 7e-07 21.7 0.0 1 2 9.4e-05 0.01 8.1 0.0 25 42 431 448 417 452 0.81 # 32923 # 34866 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.694 1_27 - 648 SMC_N PF02463.14 220 7e-07 21.7 0.0 2 2 9e-06 0.00098 11.4 0.0 124 211 532 615 472 622 0.90 # 32923 # 34866 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.694 1_21 - 386 VirC1 PF07015.6 231 0.00015 13.9 0.0 1 1 3.2e-06 0.00034 12.7 0.0 6 46 121 161 117 167 0.89 # 22797 # 23954 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 1_21 - 386 Fer4_NifH PF00142.13 273 2.6e-09 29.6 0.0 1 2 1.8e-08 1.9e-06 20.2 0.0 8 44 125 161 118 167 0.89 # 22797 # 23954 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 1_21 - 386 Fer4_NifH PF00142.13 273 2.6e-09 29.6 0.0 2 2 0.00016 0.018 7.2 0.0 175 246 310 384 298 385 0.78 # 22797 # 23954 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 1_64 - 218 AAA_16 PF13191.1 185 3.2e-07 23.5 0.0 1 1 1.3e-08 4.6e-07 23.0 0.0 25 119 7 108 2 181 0.61 # 64441 # 65094 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.682 1_27 - 648 AAA_16 PF13191.1 185 0.00017 14.7 0.2 1 1 2e-05 0.00074 12.5 0.2 22 44 428 450 418 598 0.78 # 32923 # 34866 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.694 1_41 - 516 AAA_16 PF13191.1 185 0.0005 13.1 1.4 1 1 7.1e-05 0.0026 10.8 0.0 25 49 131 155 116 178 0.83 # 47897 # 49444 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.714 1_27 - 648 AAA_23 PF13476.1 202 4.3e-05 16.9 0.0 1 1 6e-07 6.5e-05 16.3 0.0 15 40 425 451 418 461 0.81 # 32923 # 34866 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.694 1_64 - 218 AAA_18 PF13238.1 129 8e-08 25.7 0.0 1 1 1.7e-08 9.2e-07 22.3 0.0 1 113 9 144 9 150 0.75 # 64441 # 65094 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.682 1_41 - 516 AAA_18 PF13238.1 129 0.00011 15.6 0.1 1 1 3.9e-06 0.00021 14.6 0.1 1 24 133 166 133 173 0.78 # 47897 # 49444 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.714 1_95 - 246 adh_short PF00106.20 167 5.1e-36 117.1 5.0 1 2 4.7e-38 5.1e-36 117.1 5.0 1 165 7 172 7 174 0.96 # 91881 # 92618 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.673 1_95 - 246 adh_short PF00106.20 167 5.1e-36 117.1 5.0 2 2 0.049 5.3 -0.1 0.2 45 82 194 233 176 239 0.63 # 91881 # 92618 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.673 1_21 - 386 CbiA PF01656.18 195 3.7e-28 91.3 0.0 1 1 1.5e-29 1.6e-27 89.2 0.0 2 184 120 348 119 360 0.74 # 22797 # 23954 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 1_26 - 245 Methyltransf_25 PF13649.1 101 1.2e-08 28.3 0.0 1 1 1.5e-10 1.7e-08 27.9 0.0 1 101 56 147 56 147 0.87 # 32108 # 32842 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.688 1_64 - 218 AAA_14 PF13173.1 128 0.00099 12.1 0.0 1 1 1.6e-05 0.0017 11.3 0.0 3 27 7 31 5 59 0.84 # 64441 # 65094 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.682 1_27 - 648 AAA_29 PF13555.1 62 1.9e-06 20.4 0.1 1 1 1.1e-07 4.1e-06 19.3 0.1 18 46 426 453 419 461 0.77 # 32923 # 34866 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.694 1_64 - 218 AAA_29 PF13555.1 62 8.1e-06 18.4 0.0 1 1 5.6e-07 2e-05 17.1 0.0 23 50 6 33 1 42 0.79 # 64441 # 65094 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.682 1_41 - 516 AAA_29 PF13555.1 62 0.00056 12.5 0.0 1 1 3.4e-05 0.0012 11.4 0.0 24 49 131 156 125 164 0.84 # 47897 # 49444 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.714 1_64 - 218 AAA PF00004.24 132 0.00018 14.8 0.0 1 1 7.5e-06 0.00041 13.6 0.0 5 29 13 40 9 85 0.64 # 64441 # 65094 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.682 1_21 - 386 AAA PF00004.24 132 0.00038 13.7 0.0 1 1 1.4e-05 0.00079 12.7 0.0 8 57 127 198 119 230 0.82 # 22797 # 23954 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 1_94 - 1144 UvrD_C PF13361.1 351 0.0013 11.2 0.0 1 1 2.3e-05 0.0025 10.3 0.0 264 348 671 743 669 745 0.80 # 88137 # 91568 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.702 1_95 - 246 KR PF08659.5 181 1.1e-16 54.0 2.8 1 1 1.5e-18 1.6e-16 53.5 2.8 3 169 9 175 8 214 0.88 # 91881 # 92618 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.673 1_26 - 245 PCMT PF01135.14 210 2e-05 17.2 0.0 1 1 2.4e-07 2.6e-05 16.8 0.0 73 149 52 124 45 159 0.74 # 32108 # 32842 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.688 1_27 - 648 MMR_HSR1 PF01926.18 116 8.6e-05 15.5 0.0 1 1 1.9e-06 0.00021 14.3 0.0 2 24 433 455 432 486 0.86 # 32923 # 34866 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.694 1_99 - 779 N6_Mtase PF02384.11 311 3.8e-55 180.1 0.0 1 1 4.8e-57 5.2e-55 179.6 0.0 8 306 200 508 194 512 0.91 # 94775 # 97111 # 1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.691 1_27 - 648 DUF258 PF03193.11 161 1.9e-06 20.1 0.0 1 1 6.4e-08 3.5e-06 19.3 0.0 18 66 412 461 400 467 0.82 # 32923 # 34866 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.694 1_64 - 218 DUF258 PF03193.11 161 2.1e-05 16.8 0.0 1 1 6.1e-07 3.3e-05 16.1 0.0 38 62 9 33 4 95 0.73 # 64441 # 65094 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.682 1_43 - 569 TraG-D_C PF12696.2 128 7.7e-23 73.8 0.0 1 1 1.1e-24 1.2e-22 73.2 0.0 4 127 406 520 403 521 0.87 # 50356 # 52062 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.692 1_21 - 386 AAA_31 PF13614.1 157 3.6e-09 29.7 0.0 1 1 6.5e-10 7.1e-08 25.6 0.0 9 134 125 259 118 267 0.82 # 22797 # 23954 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 1_64 - 218 NTPase_1 PF03266.10 168 1.2e-05 18.1 0.0 1 2 3.6e-07 3.9e-05 16.4 0.0 2 31 9 38 8 81 0.88 # 64441 # 65094 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.682 1_64 - 218 NTPase_1 PF03266.10 168 1.2e-05 18.1 0.0 2 2 0.088 9.6 -1.1 0.0 36 80 138 184 134 197 0.68 # 64441 # 65094 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.682 1_64 - 218 AAA_33 PF13671.1 143 1.9e-09 30.6 0.0 1 1 6e-11 3.3e-09 29.8 0.0 6 122 13 147 8 170 0.74 # 64441 # 65094 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.682 1_27 - 648 AAA_33 PF13671.1 143 0.00048 13.1 0.0 1 1 3e-05 0.0016 11.3 0.0 1 20 432 451 432 519 0.90 # 32923 # 34866 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.694 1_99 - 779 Methyltransf_26 PF13659.1 117 2e-07 24.1 0.3 1 1 1.8e-08 9.9e-07 21.9 0.0 32 117 282 380 224 380 0.71 # 94775 # 97111 # 1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.691 1_26 - 245 Methyltransf_26 PF13659.1 117 2.7e-05 17.2 0.4 1 1 1.2e-06 6.7e-05 16.0 0.4 1 114 53 152 53 155 0.76 # 32108 # 32842 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.688 1_25 - 1399 AAA_30 PF13604.1 196 7.9e-50 162.1 6.5 1 2 0.043 1.6 1.3 0.1 40 79 168 207 147 221 0.78 # 27257 # 31453 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.714 1_25 - 1399 AAA_30 PF13604.1 196 7.9e-50 162.1 6.5 2 2 2.2e-51 7.9e-50 162.1 6.5 2 195 610 798 609 799 0.98 # 27257 # 31453 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.714 1_64 - 218 AAA_30 PF13604.1 196 1.3e-05 17.9 0.0 1 1 5.8e-07 2.1e-05 17.2 0.0 19 98 7 91 3 105 0.70 # 64441 # 65094 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.682 1_94 - 1144 AAA_30 PF13604.1 196 0.0003 13.4 0.0 1 1 8.1e-05 0.003 10.2 0.0 9 34 241 266 219 300 0.84 # 88137 # 91568 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.702 1_41 - 516 FtsK_SpoIIIE PF01580.13 205 0.00026 13.5 0.6 1 2 8.6e-06 0.00094 11.7 0.0 37 60 129 152 111 172 0.86 # 47897 # 49444 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.714 1_41 - 516 FtsK_SpoIIIE PF01580.13 205 0.00026 13.5 0.6 2 2 0.049 5.4 -0.6 0.1 172 204 391 419 240 420 0.73 # 47897 # 49444 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.714 1_26 - 245 MTS PF05175.9 170 0.0011 11.4 0.0 1 1 1.3e-05 0.0015 11.0 0.0 31 103 52 122 45 151 0.80 # 32108 # 32842 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.688 1_16 - 1140 Lon_C PF05362.8 205 0.00022 13.6 0.0 1 1 5e-06 0.00055 12.3 0.0 130 181 296 346 284 358 0.88 # 14210 # 17629 # 1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.709 1_27 - 648 Dynamin_N PF00350.18 168 0.0013 11.6 0.1 1 1 1.9e-05 0.0021 10.9 0.1 1 27 433 459 433 463 0.87 # 32923 # 34866 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.694 1_27 - 648 ABC_tran PF00005.22 137 1.5e-35 115.5 0.0 1 1 4.9e-37 2.7e-35 114.7 0.0 2 137 421 573 420 573 0.92 # 32923 # 34866 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.694 1_64 - 218 ABC_tran PF00005.22 137 3.8e-05 17.0 0.0 1 1 8.6e-07 4.7e-05 16.7 0.0 9 42 4 37 1 113 0.82 # 64441 # 65094 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.682 1_64 - 218 TIGR03263 TIGR03263 180 0.0002 13.7 0.1 1 1 4.6e-06 0.0005 12.4 0.0 3 26 8 31 6 45 0.81 # 64441 # 65094 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.682 1_95 - 246 THF_DHG_CYH_C PF02882.14 161 0.0002 13.5 0.1 1 1 4e-06 0.00044 12.4 0.1 34 78 4 48 2 66 0.92 # 91881 # 92618 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.673 1_99 - 779 Eco57I PF07669.6 106 2.2e-05 17.8 0.0 1 1 3.8e-07 4.2e-05 17.0 0.0 2 102 321 428 320 432 0.83 # 94775 # 97111 # 1 # ID=1_99;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.691 1_26 - 245 Methyltransf_9 PF08003.6 315 0.0016 10.2 0.0 1 1 2e-05 0.0022 9.7 0.0 111 189 48 124 44 145 0.83 # 32108 # 32842 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.688 1_94 - 1144 AAA_19 PF13245.1 76 1.2e-11 37.3 0.0 1 1 3.2e-12 1.2e-10 34.1 0.0 9 63 249 306 243 321 0.81 # 88137 # 91568 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.702 1_11 - 974 AAA_19 PF13245.1 76 2.5e-05 17.0 0.9 1 1 3e-06 0.00011 15.0 0.1 2 61 304 363 303 386 0.70 # 8314 # 11235 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.686 1_41 - 516 AAA_19 PF13245.1 76 0.00016 14.4 0.0 1 1 1.2e-05 0.00045 13.0 0.0 10 49 130 165 123 174 0.83 # 47897 # 49444 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.714 1_95 - 246 NAD_binding_10 PF13460.1 183 5.9e-10 32.4 4.5 1 1 7.5e-12 8.2e-10 32.0 4.5 1 182 9 227 9 228 0.74 # 91881 # 92618 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.673 1_41 - 516 AAA_10 PF12846.2 304 1.9e-58 191.2 0.0 1 1 4.2e-60 2.3e-58 191.0 0.0 1 304 130 467 130 467 0.92 # 47897 # 49444 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.714 1_64 - 218 AAA_10 PF12846.2 304 0.00077 11.9 0.0 1 1 2.2e-05 0.0012 11.3 0.0 8 35 13 40 6 93 0.78 # 64441 # 65094 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.682 1_95 - 246 adh_short_C2 PF13561.1 241 3.2e-19 62.6 0.1 1 1 5.4e-21 5.9e-19 61.8 0.0 5 192 15 198 13 224 0.91 # 91881 # 92618 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.673 1_26 - 245 Methyltransf_31 PF13847.1 152 5.4e-06 19.1 0.0 1 1 6.5e-08 7.1e-06 18.7 0.0 3 83 52 127 50 167 0.76 # 32108 # 32842 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.688 1_94 - 1144 Viral_helicase1 PF01443.13 234 6e-07 22.2 0.1 1 2 0.028 1.5 1.2 0.3 1 13 253 265 253 273 0.88 # 88137 # 91568 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.702 1_94 - 1144 Viral_helicase1 PF01443.13 234 6e-07 22.2 0.1 2 2 5.6e-07 3.1e-05 16.6 0.0 183 232 678 741 492 743 0.67 # 88137 # 91568 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.702 1_25 - 1399 Viral_helicase1 PF01443.13 234 0.00018 14.1 0.0 1 1 8.8e-06 0.00048 12.7 0.0 3 101 631 738 630 751 0.67 # 27257 # 31453 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.714 1_94 - 1144 DUF2075 PF09848.4 352 3.7e-05 15.8 0.0 1 1 8.5e-07 9.3e-05 14.5 0.0 2 25 251 274 250 301 0.80 # 88137 # 91568 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.702 1_95 - 246 Epimerase PF01370.16 236 5.6e-05 15.6 0.6 1 2 2.8e-06 0.00031 13.2 0.2 2 157 10 172 9 186 0.68 # 91881 # 92618 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.673 1_95 - 246 Epimerase PF01370.16 236 5.6e-05 15.6 0.6 2 2 0.021 2.3 0.5 0.0 34 69 194 232 157 234 0.64 # 91881 # 92618 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.673 1_11 - 974 DEAD PF00270.24 169 3.5e-08 26.1 0.0 1 1 7.4e-09 8e-07 21.7 0.0 2 164 299 515 298 521 0.68 # 8314 # 11235 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.686 1_64 - 218 DUF815 PF05673.8 250 0.00087 11.2 0.0 1 1 1.1e-05 0.0012 10.8 0.0 59 85 12 38 4 78 0.76 # 64441 # 65094 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.682 1_43 - 569 TrwB_AAD_bind PF10412.4 386 4.8e-18 57.9 0.0 1 1 1.3e-19 7.1e-18 57.3 0.0 75 380 218 534 215 540 0.78 # 50356 # 52062 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.692 1_41 - 516 TrwB_AAD_bind PF10412.4 386 0.00035 12.3 0.1 1 2 2.5e-05 0.0014 10.3 0.0 17 56 132 172 126 198 0.89 # 47897 # 49444 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.714 1_41 - 516 TrwB_AAD_bind PF10412.4 386 0.00035 12.3 0.1 2 2 0.064 3.5 -0.9 0.0 223 309 352 450 346 470 0.64 # 47897 # 49444 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.714 1_25 - 1399 AAA_11 PF13086.1 236 0.0012 11.5 3.0 1 1 7.3e-06 0.00079 12.0 0.1 189 232 695 740 659 741 0.74 # 27257 # 31453 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.714 1_43 - 569 T4SS-DNA_transf PF02534.9 469 2e-31 102.1 0.0 1 1 5.6e-33 6.1e-31 100.4 0.0 46 454 155 549 121 556 0.81 # 50356 # 52062 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.692 1_64 - 218 ArgK PF03308.11 267 2.1e-05 16.4 0.1 1 1 6.2e-07 3.4e-05 15.7 0.1 29 61 6 38 2 50 0.85 # 64441 # 65094 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.682 1_41 - 516 ArgK PF03308.11 267 2.3e-05 16.3 0.0 1 1 8.3e-07 4.5e-05 15.3 0.0 32 64 133 164 122 174 0.84 # 47897 # 49444 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.714 1_26 - 245 Methyltransf_23 PF13489.1 161 8.4e-15 47.9 0.0 1 1 9.9e-17 1.1e-14 47.5 0.0 22 121 52 169 40 208 0.75 # 32108 # 32842 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.688 1_64 - 218 RNA_helicase PF00910.17 107 0.00028 14.1 0.0 1 1 4.3e-06 0.00047 13.4 0.0 1 25 9 33 9 63 0.86 # 64441 # 65094 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.682 1_27 - 648 UPF0079 PF02367.12 123 0.00016 14.3 0.1 1 1 3.1e-06 0.00033 13.3 0.1 10 35 425 450 419 457 0.87 # 32923 # 34866 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.694 1_18 - 504 S1 PF00575.18 74 1.2e-33 108.1 0.9 1 2 5.6e-18 6.1e-16 51.4 0.0 2 74 338 410 337 410 0.95 # 19117 # 20628 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.655 1_18 - 504 S1 PF00575.18 74 1.2e-33 108.1 0.9 2 2 3.7e-19 4.1e-17 55.2 0.4 3 72 423 495 421 497 0.97 # 19117 # 20628 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.655 1_95 - 246 IlvN PF07991.7 165 0.00062 12.2 0.5 1 1 1.1e-05 0.0012 11.3 0.2 2 61 4 68 3 76 0.72 # 91881 # 92618 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.673 1_94 - 1144 UvrD-helicase PF00580.16 315 8.9e-10 31.3 0.0 1 2 9.7e-07 0.00011 14.6 0.0 5 51 241 288 237 289 0.83 # 88137 # 91568 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.702 1_94 - 1144 UvrD-helicase PF00580.16 315 8.9e-10 31.3 0.0 2 2 1.3e-06 0.00014 14.2 0.0 256 295 523 562 516 563 0.93 # 88137 # 91568 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.702 1_64 - 218 NACHT PF05729.7 166 0.00048 12.8 0.0 1 1 2.6e-05 0.0014 11.3 0.0 3 30 9 36 7 60 0.91 # 64441 # 65094 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.682 1_27 - 648 NACHT PF05729.7 166 0.00095 11.9 0.2 1 1 4.6e-05 0.0025 10.5 0.2 2 20 432 450 431 454 0.91 # 32923 # 34866 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.694 1_27 - 648 AAA_25 PF13481.1 194 1.1e-05 17.9 0.6 1 2 5.7e-07 6.2e-05 15.5 0.1 30 131 427 516 396 523 0.78 # 32923 # 34866 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.694 1_27 - 648 AAA_25 PF13481.1 194 1.1e-05 17.9 0.6 2 2 0.073 7.9 -1.2 0.0 97 187 560 601 522 605 0.59 # 32923 # 34866 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.694 1_64 - 218 AAA_28 PF13521.1 163 4.3e-07 23.0 0.0 1 1 4.9e-09 5.4e-07 22.7 0.0 2 94 9 108 8 183 0.69 # 64441 # 65094 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.682 1_21 - 386 APS_kinase PF01583.15 157 0.00039 13.1 0.0 1 2 0.0028 0.15 4.7 0.0 12 52 127 166 119 172 0.87 # 22797 # 23954 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 1_21 - 386 APS_kinase PF01583.15 157 0.00039 13.1 0.0 2 2 0.0012 0.063 6.0 0.0 96 136 239 278 218 286 0.85 # 22797 # 23954 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 1_64 - 218 APS_kinase PF01583.15 157 0.00049 12.8 0.0 1 1 1.7e-05 0.00095 11.9 0.0 1 34 5 38 5 44 0.91 # 64441 # 65094 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.682 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/9813c3e9-d82d-4caf-bce8-8996b265f68d # Target file: checkm_output/bins/pGCA_000364805.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000364805.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/9813c3e9-d82d-4caf-bce8-8996b265f68d checkm_output/bins/pGCA_000364805.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:41:06 2020 # [ok]