# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_29 - 208 MipZ PF09140.6 261 1.4e-13 43.2 1.5 1 1 3.5e-14 3.2e-12 38.8 1.2 1 136 7 122 7 133 0.81 # 27235 # 27858 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.486 1_29 - 208 YhjQ PF06564.7 244 8.5e-10 31.1 0.1 1 2 4.1e-08 3.7e-06 19.2 0.1 6 38 11 43 5 47 0.88 # 27235 # 27858 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.486 1_29 - 208 YhjQ PF06564.7 244 8.5e-10 31.1 0.1 2 2 2.9e-05 0.0026 9.9 0.0 108 144 76 111 57 121 0.82 # 27235 # 27858 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.486 1_64 - 1327 UvrD_C_2 PF13538.1 104 1.5e-08 27.5 0.1 1 1 1e-09 4.8e-08 25.9 0.1 38 103 876 936 836 937 0.67 # 65111 # 69091 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_18 - 561 UvrD_C_2 PF13538.1 104 2.2e-06 20.6 0.0 1 1 1.3e-07 6e-06 19.2 0.0 17 102 412 507 394 509 0.75 # 16847 # 18529 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.507 1_64 - 1327 AAA_22 PF13401.1 131 3.5e-06 20.0 1.7 1 3 0.064 1.9 1.4 0.0 11 22 48 59 47 66 0.91 # 65111 # 69091 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_64 - 1327 AAA_22 PF13401.1 131 3.5e-06 20.0 1.7 2 3 0.00016 0.0049 9.8 0.1 7 128 589 709 583 711 0.64 # 65111 # 69091 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_64 - 1327 AAA_22 PF13401.1 131 3.5e-06 20.0 1.7 3 3 0.0082 0.25 4.3 0.0 49 101 977 1042 947 1067 0.65 # 65111 # 69091 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_18 - 561 AAA_22 PF13401.1 131 6.5e-06 19.1 1.7 1 2 0.0028 0.084 5.8 0.0 7 22 18 33 11 85 0.84 # 16847 # 18529 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.507 1_18 - 561 AAA_22 PF13401.1 131 6.5e-06 19.1 1.7 2 2 0.0001 0.0031 10.5 1.7 39 111 160 222 127 232 0.66 # 16847 # 18529 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.507 1_37 - 852 AAA_22 PF13401.1 131 0.00018 14.4 0.0 1 2 0.054 1.6 1.6 0.0 13 31 53 71 46 104 0.80 # 36897 # 39452 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_37 - 852 AAA_22 PF13401.1 131 0.00018 14.4 0.0 2 2 0.00035 0.011 8.7 0.0 69 108 166 210 114 220 0.80 # 36897 # 39452 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_29 - 208 SRP54 PF00448.17 196 4.7e-07 22.2 0.0 1 1 8.4e-09 7.7e-07 21.5 0.0 11 91 17 92 8 112 0.84 # 27235 # 27858 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.486 1_19 - 539 AAA_15 PF13175.1 415 1.2e-14 46.9 0.0 1 2 1.9e-05 0.0017 10.1 0.0 25 43 18 49 3 113 0.71 # 18533 # 20149 # -1 # ID=1_19;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.511 1_19 - 539 AAA_15 PF13175.1 415 1.2e-14 46.9 0.0 2 2 6.1e-13 5.5e-11 34.8 0.0 338 415 246 311 158 311 0.76 # 18533 # 20149 # -1 # ID=1_19;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.511 1_38 - 616 N6_N4_Mtase PF01555.13 231 2.1e-46 151.0 0.4 1 1 7.7e-48 7e-46 149.3 0.4 1 228 101 402 101 405 0.82 # 39455 # 41302 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.462 1_19 - 539 AAA_21 PF13304.1 303 6.7e-22 71.5 0.0 1 2 1.2e-08 1.1e-06 21.6 0.0 3 60 26 87 25 116 0.73 # 18533 # 20149 # -1 # ID=1_19;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.511 1_19 - 539 AAA_21 PF13304.1 303 6.7e-22 71.5 0.0 2 2 1.3e-16 1.2e-14 47.7 0.0 169 301 168 310 143 311 0.69 # 18533 # 20149 # -1 # ID=1_19;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.511 1_36 - 1797 Helicase_C PF00271.26 78 3.3e-05 16.5 0.1 1 1 1.1e-06 0.0001 15.0 0.1 21 78 1312 1371 1302 1371 0.85 # 31377 # 36767 # 1 # ID=1_36;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.515 1_29 - 208 ArsA_ATPase PF02374.10 305 3.2e-07 22.4 2.9 1 2 4.4e-08 4e-06 18.8 0.5 6 45 12 51 7 64 0.90 # 27235 # 27858 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.486 1_29 - 208 ArsA_ATPase PF02374.10 305 3.2e-07 22.4 2.9 2 2 0.0019 0.18 3.5 0.1 120 139 78 97 57 100 0.81 # 27235 # 27858 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.486 1_18 - 561 PhoH PF02562.11 205 2.5e-05 16.3 0.0 1 2 0.0053 0.24 3.3 0.0 22 65 18 64 8 81 0.66 # 16847 # 18529 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.507 1_18 - 561 PhoH PF02562.11 205 2.5e-05 16.3 0.0 2 2 3.7e-05 0.0017 10.4 0.0 121 157 201 235 199 269 0.79 # 16847 # 18529 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.507 1_64 - 1327 PhoH PF02562.11 205 9.8e-05 14.4 4.0 1 1 4.1e-06 0.00019 13.5 0.0 6 34 571 601 569 631 0.75 # 65111 # 69091 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_48 - 217 AAA_26 PF13500.1 199 8.5e-05 15.0 0.0 1 1 2e-06 0.00019 13.9 0.0 133 196 78 149 76 151 0.76 # 50374 # 51024 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_29 - 208 Methyltransf_24 PF13578.1 106 0.00013 15.6 0.0 1 1 6.9e-06 0.00032 14.3 0.0 7 94 20 109 16 120 0.76 # 27235 # 27858 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.486 1_64 - 1327 Methyltransf_24 PF13578.1 106 0.002 11.8 2.8 1 2 0.00068 0.031 8.0 0.1 6 102 598 699 595 700 0.87 # 65111 # 69091 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_64 - 1327 Methyltransf_24 PF13578.1 106 0.002 11.8 2.8 2 2 0.046 2.1 2.0 0.1 26 66 1245 1282 1219 1302 0.81 # 65111 # 69091 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_19 - 539 SMC_N PF02463.14 220 4.6e-06 18.7 0.2 1 1 4.2e-07 3.8e-05 15.7 0.2 24 202 22 311 2 325 0.81 # 18533 # 20149 # -1 # ID=1_19;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.511 1_29 - 208 VirC1 PF07015.6 231 8.6e-16 50.4 0.1 1 1 1.6e-17 1.4e-15 49.7 0.1 3 152 8 147 6 182 0.76 # 27235 # 27858 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.486 1_29 - 208 Fer4_NifH PF00142.13 273 0.00013 14.0 0.0 1 1 2.5e-06 0.00022 13.2 0.0 5 39 12 46 8 65 0.89 # 27235 # 27858 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.486 1_37 - 852 AAA_16 PF13191.1 185 2e-05 17.4 0.7 1 2 9e-05 0.0041 9.9 0.0 32 166 52 200 19 221 0.56 # 36897 # 39452 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_37 - 852 AAA_16 PF13191.1 185 2e-05 17.4 0.7 2 2 0.0038 0.17 4.6 0.5 66 142 587 662 559 677 0.64 # 36897 # 39452 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_64 - 1327 AAA_16 PF13191.1 185 0.0093 8.7 5.5 1 2 0.053 2.4 0.8 0.0 30 48 47 66 29 167 0.77 # 65111 # 69091 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_64 - 1327 AAA_16 PF13191.1 185 0.0093 8.7 5.5 2 2 0.00086 0.039 6.7 0.0 30 57 592 619 570 647 0.75 # 65111 # 69091 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_19 - 539 AAA_23 PF13476.1 202 4.1e-07 23.3 0.1 1 1 1.7e-08 1.6e-06 21.4 0.1 3 101 7 163 5 228 0.52 # 18533 # 20149 # -1 # ID=1_19;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.511 1_29 - 208 CbiA PF01656.18 195 3.8e-27 87.7 0.1 1 1 5.8e-29 5.3e-27 87.2 0.1 1 174 9 161 9 181 0.83 # 27235 # 27858 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.486 1_19 - 539 AAA_29 PF13555.1 62 0.00052 12.4 0.0 1 1 1.2e-05 0.0011 11.3 0.0 19 50 19 49 6 59 0.77 # 18533 # 20149 # -1 # ID=1_19;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.511 1_64 - 1327 AAA PF00004.24 132 0.00085 12.3 0.3 1 2 0.035 3.2 0.7 0.0 5 16 48 59 47 78 0.83 # 65111 # 69091 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_64 - 1327 AAA PF00004.24 132 0.00085 12.3 0.3 2 2 0.00026 0.023 7.7 0.0 4 30 592 621 591 693 0.64 # 65111 # 69091 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_18 - 561 UvrD_C PF13361.1 351 6.4e-14 44.8 0.0 1 2 5.5e-05 0.005 9.0 0.0 1 100 260 352 260 369 0.77 # 16847 # 18529 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.507 1_18 - 561 UvrD_C PF13361.1 351 6.4e-14 44.8 0.0 2 2 2.6e-12 2.4e-10 33.1 0.0 269 344 436 506 423 512 0.85 # 16847 # 18529 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.507 1_19 - 539 DUF258 PF03193.11 161 0.00047 12.1 0.0 1 1 1e-05 0.00092 11.2 0.0 16 60 4 47 1 60 0.77 # 18533 # 20149 # -1 # ID=1_19;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.511 1_29 - 208 FTHFS PF01268.14 557 0.0004 11.2 0.1 1 1 7.1e-06 0.00065 10.5 0.1 59 91 8 40 4 47 0.89 # 27235 # 27858 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.486 1_61 - 584 TraG-D_C PF12696.2 128 1.7e-30 98.3 0.0 1 1 3.2e-32 2.9e-30 97.5 0.0 1 128 427 546 427 546 0.87 # 62105 # 63856 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_29 - 208 AAA_31 PF13614.1 157 8.1e-09 28.4 0.1 1 2 1.1e-06 9.7e-05 15.1 0.0 2 41 8 47 7 51 0.90 # 27235 # 27858 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.486 1_29 - 208 AAA_31 PF13614.1 157 8.1e-09 28.4 0.1 2 2 2.3e-05 0.0021 10.8 0.0 113 149 79 115 66 123 0.78 # 27235 # 27858 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.486 1_36 - 1797 Methyltransf_26 PF13659.1 117 3.9e-17 55.2 0.0 1 1 4.2e-18 1.9e-16 52.9 0.0 3 116 62 169 60 170 0.89 # 31377 # 36767 # 1 # ID=1_36;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.515 1_38 - 616 Methyltransf_26 PF13659.1 117 0.00033 13.5 0.0 1 2 0.02 0.91 2.4 0.0 69 112 99 150 78 155 0.67 # 39455 # 41302 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.462 1_38 - 616 Methyltransf_26 PF13659.1 117 0.00033 13.5 0.0 2 2 0.00025 0.011 8.5 0.0 2 72 367 502 366 505 0.68 # 39455 # 41302 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.462 1_64 - 1327 AAA_30 PF13604.1 196 3.4e-56 182.7 1.4 1 1 9.2e-58 8.4e-56 181.4 1.4 2 195 570 769 569 770 0.95 # 65111 # 69091 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_19 - 539 DUF2813 PF11398.3 373 7.8e-12 37.6 0.0 1 2 2.5e-09 2.2e-07 23.0 0.0 16 61 16 63 1 71 0.80 # 18533 # 20149 # -1 # ID=1_19;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.511 1_19 - 539 DUF2813 PF11398.3 373 7.8e-12 37.6 0.0 2 2 4.3e-06 0.00039 12.3 0.0 287 334 272 319 257 328 0.89 # 18533 # 20149 # -1 # ID=1_19;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.511 1_19 - 539 ABC_tran PF00005.22 137 3.4e-05 16.9 0.3 1 1 1.3e-05 0.0011 12.0 0.3 6 33 17 44 13 279 0.78 # 18533 # 20149 # -1 # ID=1_19;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.511 1_38 - 616 Cons_hypoth95 PF03602.10 183 5.6e-05 15.3 0.0 1 2 3.8e-05 0.0035 9.5 0.0 113 144 99 130 72 163 0.81 # 39455 # 41302 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.462 1_38 - 616 Cons_hypoth95 PF03602.10 183 5.6e-05 15.3 0.0 2 2 0.0031 0.28 3.3 0.0 43 58 366 381 346 409 0.77 # 39455 # 41302 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.462 1_18 - 561 AAA_19 PF13245.1 76 8.5e-13 40.7 0.1 1 2 5e-13 1.5e-11 36.7 0.1 13 62 18 68 8 97 0.86 # 16847 # 18529 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.507 1_18 - 561 AAA_19 PF13245.1 76 8.5e-13 40.7 0.1 2 2 0.093 2.8 0.6 0.0 38 62 325 350 314 371 0.73 # 16847 # 18529 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.507 1_64 - 1327 AAA_19 PF13245.1 76 2.7e-08 26.3 0.4 1 1 7.7e-09 2.3e-07 23.3 0.2 8 73 583 642 576 650 0.79 # 65111 # 69091 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_29 - 208 AAA_19 PF13245.1 76 0.0011 11.5 2.7 1 2 0.00013 0.004 9.7 0.6 12 55 9 49 4 80 0.72 # 27235 # 27858 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.486 1_29 - 208 AAA_19 PF13245.1 76 0.0011 11.5 2.7 2 2 0.061 1.8 1.2 0.1 13 35 88 110 78 184 0.75 # 27235 # 27858 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.486 1_56 - 575 AAA_10 PF12846.2 304 8.3e-64 208.6 0.0 1 1 1.1e-65 1e-63 208.3 0.0 1 303 140 492 140 493 0.94 # 57151 # 58875 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.526 1_37 - 852 ResIII PF04851.10 184 8.8e-22 70.6 0.0 1 1 3.4e-23 1.6e-21 69.7 0.0 2 183 19 223 18 224 0.90 # 36897 # 39452 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_36 - 1797 ResIII PF04851.10 184 1.6e-05 17.6 0.0 1 1 5.9e-06 0.00027 13.6 0.0 4 158 837 1029 835 1054 0.61 # 31377 # 36767 # 1 # ID=1_36;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.515 1_64 - 1327 Viral_helicase1 PF01443.13 234 1.5e-07 23.9 0.2 1 2 0.00013 0.012 7.8 0.0 60 105 668 713 654 738 0.74 # 65111 # 69091 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_64 - 1327 Viral_helicase1 PF01443.13 234 1.5e-07 23.9 0.2 2 2 3.3e-06 0.0003 13.1 0.1 180 233 893 937 849 938 0.80 # 65111 # 69091 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_36 - 1797 DEAD PF00270.24 169 6.1e-06 18.6 0.0 1 2 2.9e-05 0.0013 11.0 0.0 2 75 839 909 838 948 0.74 # 31377 # 36767 # 1 # ID=1_36;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.515 1_36 - 1797 DEAD PF00270.24 169 6.1e-06 18.6 0.0 2 2 0.0027 0.12 4.6 0.0 116 138 1014 1036 992 1082 0.80 # 31377 # 36767 # 1 # ID=1_36;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.515 1_18 - 561 DEAD PF00270.24 169 3.9e-05 16.0 0.3 1 2 5.4e-05 0.0024 10.1 0.0 17 75 18 70 7 110 0.71 # 16847 # 18529 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.507 1_18 - 561 DEAD PF00270.24 169 3.9e-05 16.0 0.3 2 2 0.0056 0.26 3.5 0.2 100 135 176 215 129 235 0.67 # 16847 # 18529 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.507 1_61 - 584 TrwB_AAD_bind PF10412.4 386 8e-10 30.6 0.0 1 1 1.8e-11 1.7e-09 29.5 0.0 90 383 258 562 246 565 0.75 # 62105 # 63856 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_64 - 1327 AAA_11 PF13086.1 236 1.1e-05 17.9 4.7 1 2 0.00031 0.014 7.7 0.0 2 75 570 636 569 647 0.82 # 65111 # 69091 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_64 - 1327 AAA_11 PF13086.1 236 1.1e-05 17.9 4.7 2 2 3.8e-05 0.0017 10.7 0.5 194 232 670 711 664 712 0.77 # 65111 # 69091 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_18 - 561 AAA_11 PF13086.1 236 0.00045 12.6 0.4 1 1 4.5e-05 0.0021 10.4 0.3 21 76 19 72 9 208 0.75 # 16847 # 18529 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.507 1_29 - 208 ParA PF10609.4 81 0.00022 13.9 0.2 1 1 6.4e-06 0.00058 12.5 0.2 2 63 86 145 85 161 0.72 # 27235 # 27858 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.486 1_61 - 584 T4SS-DNA_transf PF02534.9 469 4.3e-28 90.8 0.0 1 1 8.9e-30 8.1e-28 89.9 0.0 20 448 138 568 118 580 0.75 # 62105 # 63856 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_38 - 616 MethyltransfD12 PF02086.10 260 4.7e-05 15.7 0.0 1 1 1.5e-06 0.00014 14.1 0.0 176 249 99 174 55 184 0.85 # 39455 # 41302 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.462 1_64 - 1327 PIF1 PF05970.9 364 8.7e-05 14.3 0.0 1 1 1.8e-06 0.00017 13.4 0.0 25 83 589 647 569 720 0.71 # 65111 # 69091 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_36 - 1797 Methyltransf_23 PF13489.1 161 0.00015 14.3 0.0 1 1 4.4e-06 0.0004 12.9 0.0 23 117 60 170 25 197 0.72 # 31377 # 36767 # 1 # ID=1_36;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.515 1_29 - 208 AAA_24 PF13479.1 213 1.7e-05 17.3 0.2 1 1 3.6e-07 3.3e-05 16.3 0.2 6 76 10 92 6 94 0.71 # 27235 # 27858 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.486 1_18 - 561 UvrD-helicase PF00580.16 315 3.4e-31 101.4 1.7 1 2 1.2e-14 1.1e-12 40.6 0.0 16 139 18 136 6 153 0.78 # 16847 # 18529 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.507 1_18 - 561 UvrD-helicase PF00580.16 315 3.4e-31 101.4 1.7 2 2 4.2e-21 3.8e-19 61.8 1.0 180 311 117 252 107 255 0.84 # 16847 # 18529 # -1 # ID=1_18;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.507 1_64 - 1327 NACHT PF05729.7 166 0.016 7.7 5.1 1 2 0.0063 0.58 2.6 0.0 6 19 47 60 45 72 0.88 # 65111 # 69091 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_64 - 1327 NACHT PF05729.7 166 0.016 7.7 5.1 2 2 0.0011 0.1 5.0 0.1 6 28 592 614 587 619 0.88 # 65111 # 69091 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 1_29 - 208 AAA_25 PF13481.1 194 0.00036 12.7 0.1 1 2 1.6e-05 0.0014 10.8 0.0 36 98 10 61 4 93 0.76 # 27235 # 27858 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.486 1_29 - 208 AAA_25 PF13481.1 194 0.00036 12.7 0.1 2 2 0.063 5.7 -1.0 0.0 70 99 136 164 120 202 0.70 # 27235 # 27858 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.486 1_36 - 1797 SNF2_N PF00176.18 299 3.8e-10 31.7 0.0 1 1 2.3e-11 1e-09 30.3 0.0 1 225 840 1150 840 1176 0.76 # 31377 # 36767 # 1 # ID=1_36;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.515 1_37 - 852 SNF2_N PF00176.18 299 0.00085 10.9 0.0 1 2 0.0063 0.29 2.6 0.0 34 70 53 85 42 90 0.89 # 36897 # 39452 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_37 - 852 SNF2_N PF00176.18 299 0.00085 10.9 0.0 2 2 0.0007 0.032 5.7 0.0 133 173 183 223 158 269 0.83 # 36897 # 39452 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.488 1_29 - 208 APS_kinase PF01583.15 157 0.0005 12.5 0.0 1 2 7.1e-05 0.0065 8.9 0.0 11 43 16 48 7 63 0.90 # 27235 # 27858 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.486 1_29 - 208 APS_kinase PF01583.15 157 0.0005 12.5 0.0 2 2 0.012 1.1 1.6 0.0 73 93 107 127 82 171 0.80 # 27235 # 27858 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.486 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/9fe6675f-55ff-4075-8639-eabc2888864d # Target file: checkm_output/bins/pGCA_000344785.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000344785.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/9fe6675f-55ff-4075-8639-eabc2888864d checkm_output/bins/pGCA_000344785.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:41:03 2020 # [ok]