# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 11_2 - 219 MipZ PF09140.6 261 2.1e-15 48.8 1.6 1 1 2.6e-15 8.8e-14 43.5 1.6 2 138 3 121 2 127 0.83 # 918 # 1574 # -1 # ID=11_2;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.513 7_5 - 211 MipZ PF09140.6 261 0.00015 13.2 0.1 1 1 6.6e-06 0.00022 12.7 0.1 2 54 3 55 2 119 0.83 # 2147 # 2779 # 1 # ID=7_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.502 11_2 - 219 YhjQ PF06564.7 244 0.00044 12.0 0.2 1 2 0.00015 0.01 7.5 0.2 1 37 1 37 1 42 0.84 # 918 # 1574 # -1 # ID=11_2;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.513 11_2 - 219 YhjQ PF06564.7 244 0.00044 12.0 0.2 2 2 0.0066 0.45 2.1 0.0 108 147 72 111 59 121 0.85 # 918 # 1574 # -1 # ID=11_2;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.513 2_7 - 56 tRNA_anti-like PF12869.2 144 7e-05 14.7 0.0 1 1 1e-06 7e-05 14.7 0.0 100 144 5 52 1 52 0.78 # 6652 # 6819 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.542 11_2 - 219 ArsA_ATPase PF02374.10 305 3.8e-07 21.7 0.4 1 1 1.9e-08 6.5e-07 21.0 0.4 4 49 3 50 1 64 0.85 # 918 # 1574 # -1 # ID=11_2;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.513 7_5 - 211 ArsA_ATPase PF02374.10 305 0.00013 13.4 0.0 1 1 5.6e-06 0.00019 12.8 0.0 8 41 9 42 2 57 0.87 # 2147 # 2779 # 1 # ID=7_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.502 4_1 - 385 RNA_pol_Rpb2_45 PF10385.4 66 0.00015 14.0 0.1 1 1 5.1e-06 0.00035 12.8 0.1 5 39 199 233 196 239 0.87 # 226 # 1380 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 11_2 - 219 Fer4_NifH PF00142.13 273 4.1e-05 15.2 0.0 1 1 8.4e-07 5.7e-05 14.7 0.0 7 45 9 47 1 88 0.92 # 918 # 1574 # -1 # ID=11_2;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.513 11_2 - 219 CbiA PF01656.18 195 4.3e-18 57.7 0.0 1 1 1.7e-19 5.9e-18 57.3 0.0 2 193 5 185 4 187 0.71 # 918 # 1574 # -1 # ID=11_2;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.513 7_5 - 211 CbiA PF01656.18 195 1.8e-12 39.4 0.0 1 1 8.9e-14 3e-12 38.7 0.0 1 179 4 163 4 175 0.77 # 2147 # 2779 # 1 # ID=7_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.502 11_2 - 219 AAA_31 PF13614.1 157 5.7e-07 21.9 0.1 1 2 1.8e-06 6.1e-05 15.4 0.0 5 55 6 55 2 73 0.83 # 918 # 1574 # -1 # ID=11_2;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.513 11_2 - 219 AAA_31 PF13614.1 157 5.7e-07 21.9 0.1 2 2 0.003 0.1 4.9 0.0 112 153 74 116 60 120 0.81 # 918 # 1574 # -1 # ID=11_2;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.513 7_5 - 211 AAA_31 PF13614.1 157 0.00028 13.2 0.0 1 2 0.00013 0.0044 9.3 0.0 2 40 3 41 2 58 0.88 # 2147 # 2779 # 1 # ID=7_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.502 7_5 - 211 AAA_31 PF13614.1 157 0.00028 13.2 0.0 2 2 0.028 0.94 1.8 0.0 117 148 78 108 68 116 0.82 # 2147 # 2779 # 1 # ID=7_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.502 11_2 - 219 AAA_10 PF12846.2 304 2e-05 16.5 0.0 1 1 3.8e-07 2.6e-05 16.1 0.0 5 47 4 50 2 136 0.87 # 918 # 1574 # -1 # ID=11_2;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.513 11_2 - 219 AAA_25 PF13481.1 194 7.5e-05 14.5 0.2 1 1 5.2e-06 0.00035 12.3 0.2 41 65 10 35 4 89 0.80 # 918 # 1574 # -1 # ID=11_2;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.513 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b9e809b4-8d2e-4604-839f-9964513d7d36 # Target file: checkm_output/bins/pGCA_000344335.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000344335.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b9e809b4-8d2e-4604-839f-9964513d7d36 checkm_output/bins/pGCA_000344335.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:40:59 2020 # [ok]