# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_94 - 331 RuvB_C PF05491.8 76 0.00027 13.6 0.2 1 2 0.0016 0.17 4.6 0.0 12 44 73 105 67 107 0.91 # 120667 # 121659 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.292 1_94 - 331 RuvB_C PF05491.8 76 0.00027 13.6 0.2 2 2 0.00046 0.048 6.4 0.0 15 55 222 263 209 269 0.73 # 120667 # 121659 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.292 1_106 - 257 MipZ PF09140.6 261 7.8e-09 27.9 0.1 1 2 2.2e-07 2.3e-05 16.5 0.0 2 48 4 49 3 66 0.90 # 135313 # 136083 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.311 1_106 - 257 MipZ PF09140.6 261 7.8e-09 27.9 0.1 2 2 2.9e-05 0.003 9.6 0.0 85 148 105 168 76 197 0.77 # 135313 # 136083 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.311 1_106 - 257 YhjQ PF06564.7 244 4.1e-07 22.5 0.0 1 1 9.5e-09 1e-06 21.2 0.0 9 148 10 149 2 172 0.79 # 135313 # 136083 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.311 1_12 - 445 AAA_22 PF13401.1 131 2.1e-06 20.9 2.3 1 2 2e-07 2.1e-05 17.7 0.1 7 64 84 134 78 196 0.71 # 6698 # 8032 # 1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.284 1_12 - 445 AAA_22 PF13401.1 131 2.1e-06 20.9 2.3 2 2 0.029 3 1.0 0.5 40 111 269 361 227 374 0.62 # 6698 # 8032 # 1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.284 1_106 - 257 SRP54 PF00448.17 196 3e-07 23.0 0.2 1 2 0.00097 0.1 5.0 0.0 10 38 12 40 3 46 0.90 # 135313 # 136083 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.311 1_106 - 257 SRP54 PF00448.17 196 3e-07 23.0 0.2 2 2 4e-07 4.2e-05 16.0 0.1 70 159 106 194 92 225 0.82 # 135313 # 136083 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.311 1_12 - 445 AAA_3 PF07726.6 131 2e-05 17.2 0.0 1 1 4.7e-07 5e-05 15.9 0.0 6 91 88 177 85 212 0.77 # 6698 # 8032 # 1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.284 1_12 - 445 AAA_17 PF13207.1 121 0.0017 12.2 3.0 1 2 5.8e-05 0.0062 10.4 0.0 4 64 86 161 85 239 0.59 # 6698 # 8032 # 1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.284 1_12 - 445 AAA_17 PF13207.1 121 0.0017 12.2 3.0 2 2 0.054 5.7 0.8 0.2 39 39 323 323 239 397 0.60 # 6698 # 8032 # 1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.284 1_106 - 257 ArsA_ATPase PF02374.10 305 1.1e-11 37.2 0.4 1 1 9e-13 9.5e-11 34.2 0.4 7 76 9 75 3 229 0.73 # 135313 # 136083 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.311 1_13 - 516 Cytidylate_kin2 PF13189.1 179 0.0014 11.5 4.0 1 2 3.7e-05 0.0039 10.1 2.0 24 96 22 97 19 224 0.85 # 8069 # 9616 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.305 1_13 - 516 Cytidylate_kin2 PF13189.1 179 0.0014 11.5 4.0 2 2 0.061 6.4 -0.4 0.0 29 62 261 295 250 335 0.68 # 8069 # 9616 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.305 1_106 - 257 Fer4_NifH PF00142.13 273 1.7e-07 23.6 0.4 1 1 3.7e-09 4e-07 22.4 0.4 7 43 10 46 4 253 0.67 # 135313 # 136083 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.311 1_12 - 445 AAA_16 PF13191.1 185 1.6e-08 27.7 0.0 1 2 6.3e-10 6.7e-08 25.7 0.0 2 51 64 108 63 197 0.81 # 6698 # 8032 # 1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.284 1_12 - 445 AAA_16 PF13191.1 185 1.6e-08 27.7 0.0 2 2 0.085 9 -0.8 0.1 73 120 282 338 260 374 0.50 # 6698 # 8032 # 1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.284 1_106 - 257 CbiA PF01656.18 195 2.8e-35 114.4 0.2 1 1 3.2e-37 3.4e-35 114.2 0.2 1 187 5 214 5 222 0.77 # 135313 # 136083 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.311 1_12 - 445 AAA PF00004.24 132 1.7e-07 24.5 1.0 1 1 1.1e-08 1.1e-06 21.9 0.0 3 130 86 216 85 218 0.75 # 6698 # 8032 # 1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.284 1_106 - 257 AAA_31 PF13614.1 157 8.9e-13 41.4 0.1 1 1 5e-14 5.3e-12 38.9 0.1 2 156 4 156 3 157 0.84 # 135313 # 136083 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.311 1_12 - 445 AAA_30 PF13604.1 196 0.00082 11.9 0.0 1 1 2.5e-05 0.0027 10.3 0.0 23 48 86 112 75 176 0.82 # 6698 # 8032 # 1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.284 1_63 - 219 AAA_27 PF13514.1 1111 0.00044 10.9 0.0 1 1 5.3e-06 0.00057 10.6 0.0 107 180 10 85 3 90 0.87 # 68833 # 69489 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.248 1_12 - 445 Viral_helicase1 PF01443.13 234 0.00019 14.0 0.0 1 1 5.6e-06 0.00059 12.4 0.0 3 89 86 175 84 178 0.64 # 6698 # 8032 # 1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.284 1_12 - 445 DUF853 PF05872.7 504 0.00033 12.0 0.0 1 1 6.5e-06 0.00069 11.0 0.0 150 223 335 409 329 430 0.89 # 6698 # 8032 # 1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.284 1_106 - 257 ArgK PF03308.11 267 0.00035 12.4 0.0 1 1 6.3e-06 0.00067 11.4 0.0 37 71 11 45 2 49 0.89 # 135313 # 136083 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.311 1_12 - 445 AAA_5 PF07728.9 139 9.7e-20 63.7 0.0 1 1 3.3e-21 3.5e-19 61.9 0.0 4 139 86 210 83 210 0.90 # 6698 # 8032 # 1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.284 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/88c699fc-3582-49af-8547-4726592d61be # Target file: checkm_output/bins/pGCA_000340885.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000340885.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/88c699fc-3582-49af-8547-4726592d61be checkm_output/bins/pGCA_000340885.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:40:57 2020 # [ok]