# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_18 - 298 Saccharop_dh PF03435.13 386 1.7e-05 18.1 0.6 1 1 1.1e-07 2.7e-05 17.5 0.6 1 44 8 57 8 84 0.79 # 13908 # 14801 # -1 # ID=2_18;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.733 3_4 - 385 MipZ PF09140.6 261 2e-12 40.9 0.0 1 2 5.3e-10 1.4e-07 25.1 0.1 2 40 117 155 116 171 0.92 # 2127 # 3281 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 3_4 - 385 MipZ PF09140.6 261 2e-12 40.9 0.0 2 2 1.8e-06 0.00047 13.5 0.0 77 113 220 256 202 266 0.76 # 2127 # 3281 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 3_4 - 385 YhjQ PF06564.7 244 3.8e-09 30.4 0.0 1 1 4.7e-11 1.2e-08 28.8 0.0 10 131 124 255 118 268 0.77 # 2127 # 3281 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 1_54 - 338 CoaE PF01121.15 180 0.00047 13.8 0.0 1 1 3.3e-06 0.00084 13.0 0.0 5 40 154 190 150 197 0.84 # 42715 # 43728 # 1 # ID=1_54;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.679 2_39 - 1671 UvrD_C_2 PF13538.1 104 3.3e-06 21.5 0.1 1 1 1.2e-07 3e-05 18.4 0.1 18 98 879 957 858 961 0.62 # 33505 # 38517 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.722 1_32 - 874 AAA_22 PF13401.1 131 2.6e-06 21.9 0.1 1 2 7.9e-06 0.00051 14.4 0.0 5 124 187 301 183 313 0.70 # 21073 # 23694 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.638 1_32 - 874 AAA_22 PF13401.1 131 2.6e-06 21.9 0.1 2 2 0.013 0.85 4.0 0.0 36 81 540 592 522 618 0.69 # 21073 # 23694 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.638 2_2 - 206 AAA_22 PF13401.1 131 0.00015 16.1 0.0 1 2 9e-05 0.0058 11.0 0.0 7 28 4 25 2 51 0.88 # 1863 # 2480 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.668 2_2 - 206 AAA_22 PF13401.1 131 0.00015 16.1 0.0 2 2 0.026 1.7 3.1 0.0 19 68 130 179 129 199 0.84 # 1863 # 2480 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.668 1_21 - 328 AAA_22 PF13401.1 131 0.00019 15.8 0.0 1 1 5.6e-06 0.00036 14.9 0.0 6 28 14 36 10 110 0.69 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 2_39 - 1671 AAA_22 PF13401.1 131 0.001 13.5 3.5 1 2 0.0026 0.17 6.3 0.1 8 27 597 616 589 718 0.71 # 33505 # 38517 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.722 2_39 - 1671 AAA_22 PF13401.1 131 0.001 13.5 3.5 2 2 0.032 2.1 2.8 0.1 46 100 1350 1412 1324 1439 0.69 # 33505 # 38517 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.722 2_13 - 213 ATP_bind_2 PF03668.10 284 4.1e-07 23.5 0.0 1 1 4.9e-09 6.3e-07 22.9 0.0 183 268 89 173 83 182 0.81 # 10041 # 10679 # 1 # ID=2_13;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.726 1_10 - 105 ATP_bind_2 PF03668.10 284 9.1e-05 15.8 0.4 1 1 7.1e-07 9.1e-05 15.8 0.4 245 258 86 99 23 103 0.91 # 5825 # 6139 # -1 # ID=1_10;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.737 2_52 - 571 DNA_methylase PF00145.12 335 2.2e-20 67.3 0.0 1 3 3.3e-12 8.4e-10 32.4 0.0 4 79 31 113 29 124 0.88 # 48402 # 50114 # 1 # ID=2_52;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.698 2_52 - 571 DNA_methylase PF00145.12 335 2.2e-20 67.3 0.0 2 3 3.7e-10 9.6e-08 25.7 0.0 121 168 185 232 179 251 0.87 # 48402 # 50114 # 1 # ID=2_52;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.698 2_52 - 571 DNA_methylase PF00145.12 335 2.2e-20 67.3 0.0 3 3 0.00052 0.13 5.5 0.0 286 333 506 560 463 562 0.89 # 48402 # 50114 # 1 # ID=2_52;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.698 1_124 - 859 Flavi_DEAD PF07652.9 148 3.3e-06 21.1 0.3 1 2 0.00073 0.19 5.7 0.1 11 54 40 80 32 86 0.70 # 105368 # 107944 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.705 1_124 - 859 Flavi_DEAD PF07652.9 148 3.3e-06 21.1 0.3 2 2 4.5e-06 0.0012 12.9 0.0 90 136 140 186 105 194 0.77 # 105368 # 107944 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.705 2_2 - 206 AAA_17 PF13207.1 121 3.5e-17 57.6 0.0 1 1 1.1e-18 7.1e-17 56.6 0.0 1 113 3 101 3 126 0.80 # 1863 # 2480 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.668 1_54 - 338 AAA_17 PF13207.1 121 6.1e-06 21.3 0.0 1 1 5.7e-07 3.7e-05 18.8 0.0 1 41 151 189 151 237 0.78 # 42715 # 43728 # 1 # ID=1_54;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.679 1_55 - 190 AAA_17 PF13207.1 121 7e-06 21.1 0.1 1 1 4.2e-07 2.7e-05 19.2 0.1 2 23 7 45 7 183 0.66 # 43725 # 44294 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.704 1_21 - 328 AAA_17 PF13207.1 121 1.7e-05 19.9 0.1 1 1 1.2e-06 7.6e-05 17.8 0.1 2 110 15 123 14 174 0.71 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 1_79 - 363 ADH_zinc_N_2 PF13602.1 127 5.5e-06 21.6 0.1 1 1 1.7e-07 4.3e-05 18.7 0.0 14 116 232 345 220 350 0.74 # 70862 # 71950 # 1 # ID=1_79;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.736 1_79 - 363 ADH_zinc_N PF00107.21 130 2.1e-07 24.8 0.1 1 1 2.6e-09 6.6e-07 23.2 0.1 2 117 182 307 182 320 0.79 # 70862 # 71950 # 1 # ID=1_79;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.736 2_18 - 298 Semialdhyde_dh PF01118.19 121 0.00015 16.4 0.9 1 1 1.1e-06 0.00027 15.5 0.9 2 110 8 122 7 127 0.83 # 13908 # 14801 # -1 # ID=2_18;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.733 1_124 - 859 Helicase_C PF00271.26 78 2.1e-09 31.4 0.0 1 1 5.5e-11 4.7e-09 30.3 0.0 11 77 321 398 314 399 0.95 # 105368 # 107944 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.705 3_51 - 934 Helicase_C PF00271.26 78 1.1e-06 22.7 0.3 1 1 2.5e-08 2.1e-06 21.8 0.3 12 77 416 492 411 493 0.89 # 40012 # 42813 # -1 # ID=3_51;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.688 1_67 - 949 Helicase_C PF00271.26 78 0.00054 14.1 0.0 1 1 1.9e-05 0.0016 12.6 0.0 35 77 641 680 611 681 0.87 # 58244 # 61090 # 1 # ID=1_67;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.687 3_4 - 385 ArsA_ATPase PF02374.10 305 6.8e-11 35.9 0.2 1 1 8.6e-13 2.2e-10 34.2 0.2 2 44 117 159 116 254 0.93 # 2127 # 3281 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 2_39 - 1671 PhoH PF02562.11 205 0.00037 14.0 0.2 1 3 0.00021 0.053 6.9 0.0 8 37 580 611 575 638 0.75 # 33505 # 38517 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.722 2_39 - 1671 PhoH PF02562.11 205 0.00037 14.0 0.2 2 3 0.0039 1 2.8 0.0 121 158 677 715 635 721 0.85 # 33505 # 38517 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.722 2_39 - 1671 PhoH PF02562.11 205 0.00037 14.0 0.2 3 3 0.057 15 -1.0 0.0 108 143 923 956 896 986 0.77 # 33505 # 38517 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.722 2_2 - 206 SKI PF01202.17 158 9.9e-08 26.2 0.0 1 2 8.1e-08 2.1e-05 18.7 0.0 2 29 11 38 10 62 0.81 # 1863 # 2480 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.668 2_2 - 206 SKI PF01202.17 158 9.9e-08 26.2 0.0 2 2 0.00073 0.19 5.8 0.0 84 128 77 119 60 151 0.66 # 1863 # 2480 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.668 3_4 - 385 AAA_26 PF13500.1 199 0.0013 12.6 0.8 1 2 3.3e-05 0.0084 9.9 0.1 11 30 126 145 121 148 0.87 # 2127 # 3281 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 3_4 - 385 AAA_26 PF13500.1 199 0.0013 12.6 0.8 2 2 0.029 7.4 0.3 0.0 160 195 311 352 212 356 0.60 # 2127 # 3281 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 2_18 - 298 Shikimate_DH PF01488.15 135 0.00012 16.5 0.5 1 1 7.5e-07 0.00019 15.8 0.5 15 84 8 83 6 111 0.67 # 13908 # 14801 # -1 # ID=2_18;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.733 3_4 - 385 Methyltransf_24 PF13578.1 106 9.3e-05 17.5 0.0 1 1 1.1e-06 0.00028 15.9 0.0 14 80 136 252 126 269 0.61 # 2127 # 3281 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 1_21 - 328 Zeta_toxin PF06414.7 201 7.4e-09 29.2 0.8 1 1 5e-10 6.4e-08 26.1 0.8 12 179 8 152 2 163 0.88 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 1_54 - 338 Zeta_toxin PF06414.7 201 4.4e-05 16.9 0.0 1 1 6.4e-07 8.2e-05 16.0 0.0 14 37 147 170 135 182 0.86 # 42715 # 43728 # 1 # ID=1_54;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.679 1_56 - 279 F420_oxidored PF03807.12 96 2.4e-07 25.4 0.5 1 1 6.6e-09 8.5e-07 23.6 0.1 2 87 6 88 5 96 0.80 # 44302 # 45138 # -1 # ID=1_56;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.719 2_18 - 298 F420_oxidored PF03807.12 96 8.3e-05 17.2 1.0 1 1 1.1e-06 0.00014 16.5 1.0 2 70 8 82 7 106 0.83 # 13908 # 14801 # -1 # ID=2_18;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.733 3_50 - 663 SMC_N PF02463.14 220 0.0024 11.3 0.0 1 2 0.00016 0.042 7.3 0.0 11 52 19 60 9 77 0.80 # 38022 # 40010 # 1 # ID=3_50;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.628 3_50 - 663 SMC_N PF02463.14 220 0.0024 11.3 0.0 2 2 0.011 2.9 1.3 0.0 101 154 251 567 186 594 0.65 # 38022 # 40010 # 1 # ID=3_50;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.628 3_4 - 385 VirC1 PF07015.6 231 0.0018 11.6 0.0 1 2 3.4e-05 0.0087 9.4 0.0 4 40 118 154 116 161 0.88 # 2127 # 3281 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 3_4 - 385 VirC1 PF07015.6 231 0.0018 11.6 0.0 2 2 0.05 13 -1.0 0.0 70 80 229 239 201 250 0.54 # 2127 # 3281 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 3_4 - 385 Fer4_NifH PF00142.13 273 3.1e-06 20.7 0.0 1 2 1e-06 0.00026 14.5 0.0 8 43 124 159 116 170 0.85 # 2127 # 3281 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 3_4 - 385 Fer4_NifH PF00142.13 273 3.1e-06 20.7 0.0 2 2 0.0014 0.37 4.1 0.0 175 245 309 382 271 384 0.79 # 2127 # 3281 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 1_32 - 874 AAA_16 PF13191.1 185 2.1e-05 18.8 0.7 1 1 1.3e-05 0.0011 13.2 0.1 24 51 186 213 161 305 0.84 # 21073 # 23694 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.638 1_21 - 328 AAA_16 PF13191.1 185 0.00012 16.3 0.3 1 1 3.1e-06 0.00027 15.2 0.3 26 81 14 70 6 180 0.60 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 1_54 - 338 AAA_16 PF13191.1 185 0.00054 14.2 0.0 1 1 2.4e-05 0.0021 12.3 0.0 9 47 130 171 128 198 0.82 # 42715 # 43728 # 1 # ID=1_54;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.679 3_50 - 663 AAA_23 PF13476.1 202 0.00013 16.5 0.0 1 1 5.1e-07 0.00013 16.5 0.0 12 68 20 93 10 307 0.50 # 38022 # 40010 # 1 # ID=3_50;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.628 2_2 - 206 AAA_18 PF13238.1 129 7.3e-07 23.8 0.0 1 1 7.2e-08 4.6e-06 21.2 0.0 1 33 4 39 4 82 0.71 # 1863 # 2480 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.668 1_55 - 190 AAA_18 PF13238.1 129 2.1e-06 22.3 0.0 1 1 5.6e-07 3.6e-05 18.3 0.0 1 114 7 133 7 140 0.51 # 43725 # 44294 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.704 1_21 - 328 AAA_18 PF13238.1 129 0.00011 16.8 0.1 1 1 6.8e-06 0.00044 14.8 0.1 1 115 15 126 15 139 0.72 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 1_54 - 338 AAA_18 PF13238.1 129 0.0019 12.7 0.1 1 1 7.6e-05 0.0049 11.4 0.1 1 21 152 172 152 284 0.81 # 42715 # 43728 # 1 # ID=1_54;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.679 1_79 - 363 adh_short PF00106.20 167 5.5e-05 17.4 0.3 1 1 4.4e-07 0.00011 16.4 0.3 2 85 172 247 171 266 0.70 # 70862 # 71950 # 1 # ID=1_79;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.736 3_50 - 663 AAA_13 PF13166.1 712 3.2e-07 23.4 0.9 1 2 0.00068 0.17 4.4 0.3 93 173 206 280 188 324 0.54 # 38022 # 40010 # 1 # ID=3_50;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.628 3_50 - 663 AAA_13 PF13166.1 712 3.2e-07 23.4 0.9 2 2 8.1e-08 2.1e-05 17.4 0.0 357 536 390 586 370 586 0.83 # 38022 # 40010 # 1 # ID=3_50;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.628 3_4 - 385 CbiA PF01656.18 195 2.5e-28 93.0 0.0 1 1 4.3e-30 1.1e-27 90.9 0.0 1 184 118 347 118 357 0.71 # 2127 # 3281 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 1_56 - 279 Rossmann-like PF10727.4 127 0.00068 13.6 1.0 1 1 4.5e-06 0.0011 12.9 0.2 12 91 5 84 1 97 0.83 # 44302 # 45138 # -1 # ID=1_56;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_21 - 328 AAA_29 PF13555.1 62 0.0002 15.1 0.0 1 1 1.7e-06 0.00043 14.0 0.0 25 39 14 28 4 30 0.85 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 2_2 - 206 AAA PF00004.24 132 8.6e-05 17.0 0.0 1 1 1e-06 0.00013 16.4 0.0 2 25 5 28 4 74 0.86 # 1863 # 2480 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.668 3_4 - 385 AAA PF00004.24 132 0.00011 16.6 0.0 1 1 3.2e-06 0.00041 14.8 0.0 8 54 126 194 119 243 0.81 # 2127 # 3281 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 1_21 - 328 DUF258 PF03193.11 161 0.00016 15.2 0.0 1 1 1e-06 0.00027 14.4 0.0 35 60 12 37 3 66 0.80 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 2_44 - 789 TraG-D_C PF12696.2 128 3.5e-25 82.6 0.0 1 1 2.5e-27 6.4e-25 81.7 0.0 3 127 481 599 479 600 0.85 # 41624 # 43990 # -1 # ID=2_44;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.697 1_56 - 279 NAD_binding_2 PF03446.10 163 2e-09 31.7 0.0 1 1 1.2e-11 3e-09 31.2 0.0 4 160 6 157 3 160 0.88 # 44302 # 45138 # -1 # ID=1_56;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.719 3_4 - 385 AAA_31 PF13614.1 157 2.8e-11 37.8 0.0 1 1 7.5e-13 1.9e-10 35.1 0.0 8 134 123 258 116 267 0.84 # 2127 # 3281 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 1_21 - 328 AAA_33 PF13671.1 143 2.7e-21 70.2 0.2 1 1 8.6e-23 4.4e-21 69.5 0.2 1 138 14 139 14 148 0.86 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 1_54 - 338 AAA_33 PF13671.1 143 2.8e-14 47.5 0.0 1 1 1.4e-15 7.3e-14 46.1 0.0 1 140 151 301 151 303 0.90 # 42715 # 43728 # 1 # ID=1_54;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.679 2_2 - 206 AAA_33 PF13671.1 143 6.1e-08 26.9 0.1 1 1 1.6e-08 8.2e-07 23.2 0.1 3 39 5 102 4 190 0.69 # 1863 # 2480 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.668 1_55 - 190 AAA_33 PF13671.1 143 5.8e-07 23.7 0.1 1 1 5.8e-08 3e-06 21.4 0.0 2 134 7 144 7 153 0.67 # 43725 # 44294 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.704 2_17 - 377 AAA_33 PF13671.1 143 0.00033 14.8 0.1 1 1 3e-05 0.0015 12.6 0.0 2 56 160 247 159 256 0.86 # 12754 # 13884 # -1 # ID=2_17;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.714 1_21 - 328 KTI12 PF08433.5 270 9.5e-10 32.3 0.0 1 1 2e-11 2.5e-09 30.9 0.0 2 131 13 135 13 141 0.90 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 2_2 - 206 KTI12 PF08433.5 270 0.00094 12.6 0.0 1 1 1.3e-05 0.0016 11.9 0.0 1 27 1 27 1 39 0.87 # 1863 # 2480 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.668 1_56 - 279 2-Hacid_dh_C PF02826.14 178 3e-08 27.2 0.0 1 1 1.8e-10 4.5e-08 26.7 0.0 36 102 3 72 1 101 0.82 # 44302 # 45138 # -1 # ID=1_56;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.719 2_39 - 1671 AAA_30 PF13604.1 196 5.6e-45 147.5 2.4 1 1 2.2e-47 5.6e-45 147.5 2.4 2 195 577 787 576 788 0.90 # 33505 # 38517 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.722 1_21 - 328 ABC_tran PF00005.22 137 6.1e-05 17.6 0.0 1 1 1.4e-06 0.00012 16.6 0.0 8 29 9 30 5 36 0.90 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 2_2 - 206 ABC_tran PF00005.22 137 0.001 13.6 0.0 1 1 1.8e-05 0.0015 13.0 0.0 13 36 3 26 1 128 0.79 # 1863 # 2480 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.668 2_39 - 1671 ABC_tran PF00005.22 137 0.0013 13.3 0.0 1 1 0.00012 0.01 10.3 0.0 15 41 597 623 585 694 0.86 # 33505 # 38517 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.722 1_55 - 190 TIGR03263 TIGR03263 180 3.1e-05 17.6 0.0 1 1 4.5e-07 5.8e-05 16.7 0.0 4 137 7 135 4 167 0.86 # 43725 # 44294 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.704 1_21 - 328 TIGR03263 TIGR03263 180 0.0028 11.2 0.0 1 1 3.4e-05 0.0044 10.6 0.0 2 21 13 32 12 42 0.86 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 2_39 - 1671 AAA_19 PF13245.1 76 4.6e-07 23.8 1.9 1 2 6.6e-07 5.7e-05 17.1 0.2 3 60 585 640 583 650 0.79 # 33505 # 38517 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.722 2_39 - 1671 AAA_19 PF13245.1 76 4.6e-07 23.8 1.9 2 2 0.0058 0.5 4.5 0.1 40 65 803 829 791 845 0.76 # 33505 # 38517 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.722 1_124 - 859 AAA_19 PF13245.1 76 0.00024 15.1 0.6 1 1 1.4e-05 0.0012 12.8 0.6 15 63 38 81 31 98 0.80 # 105368 # 107944 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.705 1_67 - 949 AAA_19 PF13245.1 76 0.00051 14.0 1.9 1 1 1.8e-05 0.0015 12.5 0.1 2 58 283 339 282 358 0.68 # 58244 # 61090 # 1 # ID=1_67;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.687 1_79 - 363 NAD_binding_10 PF13460.1 183 4.5e-07 24.3 0.1 1 1 2.9e-09 7.4e-07 23.6 0.1 2 102 174 281 173 295 0.79 # 70862 # 71950 # 1 # ID=1_79;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.736 1_40 - 708 AAA_10 PF12846.2 304 0.00025 14.7 0.1 1 2 3e-05 0.0038 10.9 0.1 2 35 373 406 372 465 0.81 # 30255 # 32378 # -1 # ID=1_40;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.730 1_40 - 708 AAA_10 PF12846.2 304 0.00025 14.7 0.1 2 2 0.023 3 1.4 0.0 226 263 474 515 461 532 0.86 # 30255 # 32378 # -1 # ID=1_40;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.730 1_21 - 328 AAA_10 PF12846.2 304 0.00034 14.3 0.0 1 1 3.5e-06 0.00046 13.9 0.0 1 41 12 55 12 105 0.82 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 1_124 - 859 ResIII PF04851.10 184 1.1e-20 68.5 0.0 1 1 1.1e-21 1.5e-19 64.8 0.0 2 183 4 187 3 188 0.75 # 105368 # 107944 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.705 3_51 - 934 ResIII PF04851.10 184 2.8e-16 54.1 0.0 1 1 6.9e-18 8.9e-16 52.5 0.0 9 183 57 254 46 255 0.74 # 40012 # 42813 # -1 # ID=3_51;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.688 2_39 - 1671 Zot PF05707.7 193 0.002 11.8 0.0 1 1 1.8e-05 0.0047 10.6 0.0 2 94 595 690 594 768 0.77 # 33505 # 38517 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.722 1_124 - 859 DEAD PF00270.24 169 1.8e-11 38.1 0.0 1 1 5.1e-13 4.3e-11 36.8 0.0 2 163 8 187 7 192 0.69 # 105368 # 107944 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.705 3_51 - 934 DEAD PF00270.24 169 7.8e-08 26.2 0.0 1 1 2.7e-09 2.3e-07 24.7 0.0 19 133 81 226 69 257 0.68 # 40012 # 42813 # -1 # ID=3_51;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.688 1_67 - 949 DEAD PF00270.24 169 2.9e-06 21.1 0.0 1 2 0.00032 0.028 8.2 0.0 2 87 278 372 277 389 0.66 # 58244 # 61090 # 1 # ID=1_67;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.687 1_67 - 949 DEAD PF00270.24 169 2.9e-06 21.1 0.0 2 2 5.4e-05 0.0046 10.7 0.0 118 163 452 496 411 503 0.70 # 58244 # 61090 # 1 # ID=1_67;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.687 2_44 - 789 TrwB_AAD_bind PF10412.4 386 4.6e-16 52.6 0.0 1 1 3.2e-18 8.3e-16 51.7 0.0 183 370 413 603 391 616 0.84 # 41624 # 43990 # -1 # ID=2_44;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.697 1_55 - 190 CPT PF07931.7 174 1.3e-12 41.9 0.4 1 1 4.4e-14 5.7e-12 39.8 0.4 4 172 7 179 5 181 0.79 # 43725 # 44294 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.704 1_21 - 328 CPT PF07931.7 174 0.0015 12.4 3.0 1 2 0.00018 0.023 8.5 0.1 3 20 14 31 12 37 0.91 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 1_21 - 328 CPT PF07931.7 174 0.0015 12.4 3.0 2 2 0.0047 0.61 3.9 0.6 106 149 99 146 70 155 0.68 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 2_44 - 789 T4SS-DNA_transf PF02534.9 469 1.1e-20 67.8 0.0 1 1 6.3e-22 1.6e-19 64.0 0.0 46 465 209 640 158 644 0.77 # 41624 # 43990 # -1 # ID=2_44;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.697 2_18 - 298 Ldh_1_N PF00056.18 141 9.6e-15 48.9 0.7 1 1 6.5e-17 1.7e-14 48.1 0.7 3 136 8 141 7 146 0.92 # 13908 # 14801 # -1 # ID=2_18;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.733 2_2 - 206 RNA_helicase PF00910.17 107 0.002 12.6 0.0 1 1 2.2e-05 0.0029 12.1 0.0 1 26 4 29 4 88 0.74 # 1863 # 2480 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.668 1_32 - 874 RNA_helicase PF00910.17 107 0.003 12.0 0.0 1 1 8.3e-05 0.011 10.2 0.0 2 31 190 219 189 315 0.83 # 21073 # 23694 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.638 1_56 - 279 IlvN PF07991.7 165 8.3e-05 16.2 0.0 1 1 6e-07 0.00015 15.4 0.0 5 78 4 79 1 90 0.86 # 44302 # 45138 # -1 # ID=1_56;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.719 1_21 - 328 AAA_24 PF13479.1 213 7e-05 16.7 0.0 1 1 3.9e-07 0.0001 16.2 0.0 5 75 14 81 10 102 0.73 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 1_32 - 874 NACHT PF05729.7 166 7e-11 36.3 0.0 1 1 8.8e-13 2.3e-10 34.6 0.0 1 163 187 363 187 365 0.73 # 21073 # 23694 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.638 1_21 - 328 AAA_25 PF13481.1 194 3.1e-05 17.7 0.9 1 2 4.1e-06 0.00035 14.2 0.0 25 50 4 29 2 35 0.86 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 1_21 - 328 AAA_25 PF13481.1 194 3.1e-05 17.7 0.9 2 2 0.048 4.1 1.0 0.1 145 176 37 68 31 80 0.83 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 1_32 - 874 AAA_25 PF13481.1 194 3.6e-05 17.5 0.0 1 1 1.2e-06 0.0001 16.0 0.0 28 85 181 235 159 279 0.83 # 21073 # 23694 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.638 2_2 - 206 AAA_25 PF13481.1 194 0.00087 12.9 0.0 1 1 1.8e-05 0.0015 12.2 0.0 37 57 5 25 2 45 0.87 # 1863 # 2480 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.668 1_124 - 859 SNF2_N PF00176.18 299 0.00019 14.5 0.0 1 1 1.2e-06 0.0003 13.9 0.0 113 172 125 186 42 192 0.83 # 105368 # 107944 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.705 2_2 - 206 AAA_28 PF13521.1 163 8.1e-05 16.9 0.0 1 1 2.1e-06 0.00018 15.7 0.0 1 26 3 29 3 36 0.86 # 1863 # 2480 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.668 1_21 - 328 AAA_28 PF13521.1 163 0.0011 13.1 1.1 1 1 4.2e-05 0.0036 11.5 0.3 2 17 15 30 14 37 0.92 # 11183 # 12166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.723 3_50 - 663 AAA_28 PF13521.1 163 0.0018 12.5 0.0 1 1 2.1e-05 0.0018 12.5 0.0 3 39 36 76 34 97 0.85 # 38022 # 40010 # 1 # ID=3_50;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.628 3_4 - 385 APS_kinase PF01583.15 157 0.00024 15.0 0.1 1 2 0.00029 0.074 6.9 0.0 11 50 125 163 117 171 0.80 # 2127 # 3281 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 3_4 - 385 APS_kinase PF01583.15 157 0.00024 15.0 0.1 2 2 0.00074 0.19 5.6 0.0 92 138 234 279 218 289 0.81 # 2127 # 3281 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.642 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/c12d98bb-150b-4ee6-9523-6ab0361f9dc5 # Target file: checkm_output/bins/pGCA_000340845.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000340845.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c12d98bb-150b-4ee6-9523-6ab0361f9dc5 checkm_output/bins/pGCA_000340845.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:40:58 2020 # [ok]