# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 17_1 - 81 Torsin PF06309.6 127 0.0018 12.6 0.1 1 1 7.1e-06 0.0021 12.4 0.1 68 116 10 59 6 66 0.80 # 3 # 245 # 1 # ID=17_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.321 14_1 - 184 IstB_IS21 PF01695.12 178 4.9e-71 232.2 0.0 1 1 3.8e-73 5.6e-71 232.0 0.0 14 178 1 165 1 165 0.99 # 54 # 605 # -1 # ID=14_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.355 17_1 - 81 IstB_IS21 PF01695.12 178 1.2e-14 48.5 0.0 1 1 9.9e-17 1.5e-14 48.3 0.0 2 55 28 81 27 81 0.97 # 3 # 245 # 1 # ID=17_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.321 1_32 - 309 MipZ PF09140.6 261 2.5e-07 24.4 0.2 1 1 1.7e-07 5.1e-05 16.9 0.2 1 122 5 149 5 156 0.54 # 26391 # 27317 # -1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 1_32 - 309 YhjQ PF06564.7 244 4.7e-07 23.8 0.0 1 1 4.1e-09 6.1e-07 23.4 0.0 10 177 13 184 6 213 0.70 # 26391 # 27317 # -1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 3_29 - 272 YhjQ PF06564.7 244 0.00021 15.2 0.1 1 2 0.00097 0.14 5.8 0.1 3 37 4 38 2 45 0.89 # 25430 # 26245 # -1 # ID=3_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.305 3_29 - 272 YhjQ PF06564.7 244 0.00021 15.2 0.1 2 2 0.00038 0.056 7.2 0.0 102 150 122 171 88 193 0.69 # 25430 # 26245 # -1 # ID=3_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.305 8_6 - 791 UvrD_C_2 PF13538.1 104 5.9e-22 72.3 0.1 1 1 6e-24 1.8e-21 70.7 0.1 2 101 645 744 644 747 0.83 # 3354 # 5726 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_69 - 223 DUF2110 PF09883.4 225 0.0016 12.5 0.1 1 1 1.7e-05 0.0026 11.9 0.1 22 99 104 179 99 193 0.90 # 53268 # 53936 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.363 4_4 - 475 DUF2110 PF09883.4 225 0.0021 12.1 0.2 1 1 4.5e-05 0.0067 10.5 0.1 5 109 234 332 231 352 0.81 # 2400 # 3824 # 1 # ID=4_4;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 14_1 - 184 AAA_2 PF07724.9 171 0.0007 14.0 0.0 1 1 3.5e-06 0.001 13.4 0.0 3 67 34 97 32 105 0.82 # 54 # 605 # -1 # ID=14_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.355 3_14 - 967 DUF87 PF01935.12 229 2.9e-07 24.9 3.4 1 2 1e-05 0.0006 14.1 0.0 2 49 385 433 384 460 0.76 # 13613 # 16513 # -1 # ID=3_14;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.372 3_14 - 967 DUF87 PF01935.12 229 2.9e-07 24.9 3.4 2 2 0.0011 0.066 7.4 0.0 153 228 566 650 480 651 0.76 # 13613 # 16513 # -1 # ID=3_14;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.372 2_13 - 625 DUF87 PF01935.12 229 6.3e-07 23.8 3.0 1 1 1.1e-08 6.4e-07 23.8 0.2 14 142 242 385 230 475 0.56 # 7747 # 9621 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 3_28 - 486 DUF87 PF01935.12 229 1.1e-05 19.7 0.1 1 2 0.014 0.81 3.9 0.0 92 148 15 75 6 207 0.76 # 23943 # 25400 # -1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.332 3_28 - 486 DUF87 PF01935.12 229 1.1e-05 19.7 0.1 2 2 1.6e-05 0.00094 13.5 0.0 25 59 238 271 229 274 0.85 # 23943 # 25400 # -1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.332 1_77 - 645 DUF87 PF01935.12 229 0.00041 14.6 0.9 1 2 0.00037 0.022 9.0 0.0 28 68 252 291 250 324 0.79 # 62526 # 64460 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.362 1_77 - 645 DUF87 PF01935.12 229 0.00041 14.6 0.9 2 2 0.062 3.7 1.7 0.0 143 220 400 470 383 478 0.80 # 62526 # 64460 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.362 3_8 - 863 DUF87 PF01935.12 229 0.00099 13.4 0.0 1 1 4.5e-05 0.0027 12.0 0.0 26 63 496 532 488 658 0.83 # 8107 # 10695 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.365 3_28 - 486 Septin PF00735.13 281 0.00041 13.8 0.1 1 2 0.0075 2.2 1.6 0.0 71 93 65 87 43 94 0.92 # 23943 # 25400 # -1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.332 3_28 - 486 Septin PF00735.13 281 0.00041 13.8 0.1 2 2 3.2e-05 0.0096 9.3 0.1 7 39 239 271 235 292 0.76 # 23943 # 25400 # -1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.332 14_1 - 184 AAA_22 PF13401.1 131 3.3e-07 25.0 0.8 1 1 1.7e-06 7.4e-05 17.4 0.5 3 101 33 110 29 139 0.69 # 54 # 605 # -1 # ID=14_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.355 8_6 - 791 AAA_22 PF13401.1 131 2.2e-05 19.0 0.1 1 1 2.2e-06 9.4e-05 17.0 0.0 4 104 422 520 416 544 0.63 # 3354 # 5726 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 3_28 - 486 AAA_22 PF13401.1 131 5.4e-05 17.8 0.0 1 1 6e-06 0.00026 15.6 0.0 3 30 235 262 233 329 0.73 # 23943 # 25400 # -1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.332 1_61 - 444 AAA_22 PF13401.1 131 8.3e-05 17.2 0.1 1 1 8.5e-06 0.00036 15.1 0.0 2 27 210 235 209 319 0.69 # 47128 # 48459 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 3_14 - 967 AAA_22 PF13401.1 131 8.9e-05 17.1 0.0 1 1 5.9e-05 0.0025 12.4 0.0 4 28 407 431 406 472 0.84 # 13613 # 16513 # -1 # ID=3_14;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.372 4_11 - 201 AAA_22 PF13401.1 131 0.0022 12.6 0.2 1 1 0.00062 0.026 9.1 0.2 6 38 3 29 1 100 0.68 # 5827 # 6429 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.343 1_77 - 645 AAA_22 PF13401.1 131 0.0032 12.1 0.4 1 1 0.00039 0.016 9.8 0.0 6 28 249 271 244 296 0.87 # 62526 # 64460 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.362 3_29 - 272 ATP_bind_1 PF03029.12 238 0.0018 12.3 0.1 1 2 0.012 3.5 1.5 0.0 6 45 13 52 5 59 0.88 # 25430 # 26245 # -1 # ID=3_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.305 3_29 - 272 ATP_bind_1 PF03029.12 238 0.0018 12.3 0.1 2 2 7.3e-05 0.022 8.7 0.0 72 113 118 160 100 253 0.81 # 25430 # 26245 # -1 # ID=3_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.305 3_11 - 313 XS PF03468.9 116 0.00058 14.3 1.0 1 1 7.9e-06 0.0012 13.3 0.2 18 81 198 260 187 273 0.79 # 11579 # 12517 # -1 # ID=3_11;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.376 1_30 - 274 XS PF03468.9 116 0.00095 13.6 0.2 1 1 1.3e-05 0.002 12.5 0.2 45 85 78 118 67 132 0.86 # 25219 # 26040 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.296 1_77 - 645 KAP_NTPase PF07693.9 325 0.0016 11.9 0.1 1 1 1.5e-05 0.0044 10.4 0.0 18 64 245 467 239 529 0.77 # 62526 # 64460 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.362 1_61 - 444 AAA_17 PF13207.1 121 0.00014 17.1 4.1 1 2 0.017 0.73 5.1 0.4 48 109 15 94 3 103 0.63 # 47128 # 48459 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_61 - 444 AAA_17 PF13207.1 121 0.00014 17.1 4.1 2 2 0.00038 0.016 10.5 0.1 2 27 215 237 214 331 0.72 # 47128 # 48459 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 3_14 - 967 AAA_17 PF13207.1 121 0.00019 16.7 2.4 1 1 7.5e-05 0.0032 12.7 0.0 3 19 411 427 411 486 0.84 # 13613 # 16513 # -1 # ID=3_14;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.372 14_1 - 184 AAA_17 PF13207.1 121 0.00024 16.4 0.4 1 1 1.1e-05 0.00045 15.5 0.4 2 64 37 107 36 168 0.59 # 54 # 605 # -1 # ID=14_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.355 3_28 - 486 AAA_17 PF13207.1 121 0.0015 13.8 1.9 1 1 7.9e-05 0.0034 12.7 0.1 1 59 238 310 238 358 0.64 # 23943 # 25400 # -1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.332 1_77 - 645 AAA_17 PF13207.1 121 0.0016 13.8 0.2 1 1 0.00015 0.0065 11.7 0.0 3 23 251 271 251 331 0.80 # 62526 # 64460 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.362 2_35 - 430 AAA_17 PF13207.1 121 0.0025 13.1 0.3 1 1 0.00082 0.035 9.4 0.0 8 78 158 247 151 321 0.59 # 31155 # 32444 # 1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.316 2_13 - 625 AAA_17 PF13207.1 121 0.0089 11.3 2.1 1 1 0.0016 0.07 8.4 0.2 3 15 255 267 255 270 0.90 # 7747 # 9621 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 1_77 - 645 Miro PF08477.8 119 0.00062 14.7 0.7 1 1 1.2e-05 0.0017 13.3 0.1 3 62 251 309 250 323 0.79 # 62526 # 64460 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.362 3_28 - 486 Miro PF08477.8 119 0.00069 14.6 0.2 1 1 1.1e-05 0.0017 13.3 0.2 1 30 238 267 238 370 0.76 # 23943 # 25400 # -1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.332 1_32 - 309 ArsA_ATPase PF02374.10 305 3.9e-05 17.2 1.2 1 1 4.7e-07 0.00014 15.4 1.2 8 54 12 59 5 138 0.59 # 26391 # 27317 # -1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 8_6 - 791 PhoH PF02562.11 205 1.2e-07 25.6 0.6 1 3 6.5e-08 9.7e-06 19.4 0.0 5 37 408 440 406 476 0.84 # 3354 # 5726 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 8_6 - 791 PhoH PF02562.11 205 1.2e-07 25.6 0.6 2 3 0.014 2.1 1.9 0.0 119 161 504 546 501 576 0.77 # 3354 # 5726 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 8_6 - 791 PhoH PF02562.11 205 1.2e-07 25.6 0.6 3 3 0.074 11 -0.4 0.1 44 93 594 641 589 658 0.85 # 3354 # 5726 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 14_1 - 184 PhoH PF02562.11 205 8.6e-07 22.8 0.0 1 1 1e-08 1.5e-06 22.0 0.1 13 60 28 75 15 107 0.79 # 54 # 605 # -1 # ID=14_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.355 14_1 - 184 AFG1_ATPase PF03969.11 362 6.3e-06 19.6 0.0 1 1 2.5e-08 7.5e-06 19.3 0.0 66 207 38 175 12 181 0.72 # 54 # 605 # -1 # ID=14_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.355 1_61 - 444 T2SE PF00437.15 272 3.5e-34 112.3 0.0 1 1 6.9e-36 5.1e-34 111.8 0.0 10 264 95 352 86 360 0.87 # 47128 # 48459 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 3_28 - 486 T2SE PF00437.15 272 5.1e-33 108.5 0.0 1 1 9.9e-35 7.4e-33 108.0 0.0 4 260 111 374 108 384 0.90 # 23943 # 25400 # -1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.332 2_38 - 482 T2SE PF00437.15 272 5.9e-23 75.5 0.1 1 1 7.9e-25 5.9e-23 75.5 0.1 25 261 144 382 137 387 0.87 # 34390 # 35835 # 1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.328 8_6 - 791 T2SE PF00437.15 272 0.0005 13.4 0.1 1 1 1.6e-05 0.0012 12.2 0.1 103 155 398 449 372 459 0.80 # 3354 # 5726 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_77 - 645 Zeta_toxin PF06414.7 201 0.00018 15.1 0.7 1 2 0.0018 0.54 3.7 0.2 97 133 141 178 92 185 0.79 # 62526 # 64460 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.362 1_77 - 645 Zeta_toxin PF06414.7 201 0.00018 15.1 0.7 2 2 4.2e-05 0.012 9.1 0.0 19 56 250 287 239 300 0.82 # 62526 # 64460 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.362 1_32 - 309 Fer4_NifH PF00142.13 273 0.00084 13.0 0.4 1 2 9.3e-06 0.0028 11.3 0.1 7 59 12 65 7 89 0.74 # 26391 # 27317 # -1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 1_32 - 309 Fer4_NifH PF00142.13 273 0.00084 13.0 0.4 2 2 0.078 23 -1.6 0.0 192 239 175 221 170 229 0.65 # 26391 # 27317 # -1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 14_1 - 184 Arch_ATPase PF01637.13 234 0.00018 15.7 0.3 1 1 2.2e-06 0.00065 13.9 0.3 16 83 32 117 20 149 0.60 # 54 # 605 # -1 # ID=14_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.355 14_1 - 184 AAA_16 PF13191.1 185 1.2e-05 19.8 0.0 1 1 1.2e-07 1.8e-05 19.3 0.0 23 73 33 80 18 164 0.77 # 54 # 605 # -1 # ID=14_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.355 1_61 - 444 AAA_16 PF13191.1 185 4.3e-05 18.0 0.0 1 1 1.5e-06 0.00022 15.7 0.0 22 47 210 235 199 263 0.84 # 47128 # 48459 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_77 - 645 AAA_23 PF13476.1 202 0.012 10.3 8.4 1 2 0.0017 0.25 6.0 0.5 71 173 69 170 20 195 0.51 # 62526 # 64460 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.362 1_77 - 645 AAA_23 PF13476.1 202 0.012 10.3 8.4 2 2 0.00034 0.051 8.3 0.8 24 41 252 269 251 366 0.74 # 62526 # 64460 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.362 3_28 - 486 AAA_23 PF13476.1 202 0.012 10.3 5.2 1 1 3.9e-05 0.0057 11.4 1.5 22 78 239 305 235 480 0.57 # 23943 # 25400 # -1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.332 1_61 - 444 AAA_18 PF13238.1 129 7.9e-05 17.4 3.4 1 1 1.1e-05 0.00049 14.9 0.0 1 42 215 260 215 318 0.66 # 47128 # 48459 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_77 - 645 AAA_18 PF13238.1 129 0.00036 15.3 2.4 1 1 1.2e-05 0.00051 14.8 0.0 2 40 251 286 251 325 0.74 # 62526 # 64460 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.362 2_35 - 430 AAA_18 PF13238.1 129 0.00052 14.8 0.0 1 1 7.4e-05 0.0031 12.3 0.0 7 92 158 253 157 278 0.66 # 31155 # 32444 # 1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.316 3_28 - 486 AAA_18 PF13238.1 129 0.001 13.9 0.9 1 1 6.5e-05 0.0028 12.4 0.1 1 35 239 277 239 341 0.77 # 23943 # 25400 # -1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.332 14_1 - 184 AAA_18 PF13238.1 129 0.0012 13.6 1.2 1 1 0.00016 0.0067 11.2 1.2 1 82 37 105 37 147 0.57 # 54 # 605 # -1 # ID=14_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.355 3_14 - 967 AAA_18 PF13238.1 129 0.0045 11.8 2.5 1 1 0.00046 0.019 9.7 0.0 2 18 411 427 411 462 0.83 # 13613 # 16513 # -1 # ID=3_14;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.372 8_6 - 791 AAA_18 PF13238.1 129 0.039 8.7 0.0 1 2 0.029 1.2 3.9 0.1 17 58 289 328 273 357 0.84 # 3354 # 5726 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 8_6 - 791 AAA_18 PF13238.1 129 0.039 8.7 0.0 2 2 0.00091 0.039 8.7 0.0 3 81 427 513 426 530 0.78 # 3354 # 5726 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_32 - 309 CbiA PF01656.18 195 7.4e-26 85.2 0.2 1 1 1.3e-27 9.6e-26 84.8 0.2 1 193 7 230 7 231 0.77 # 26391 # 27317 # -1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 2_35 - 430 CbiA PF01656.18 195 5.1e-05 17.2 0.0 1 1 3.5e-06 0.00026 14.9 0.0 1 131 151 300 151 322 0.55 # 31155 # 32444 # 1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.316 3_29 - 272 CbiA PF01656.18 195 7.4e-05 16.7 0.0 1 1 1.3e-06 9.4e-05 16.3 0.0 11 158 15 206 8 240 0.65 # 25430 # 26245 # -1 # ID=3_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.305 14_1 - 184 CbiA PF01656.18 195 0.00016 15.6 0.2 1 1 2.7e-06 0.0002 15.2 0.2 6 36 41 72 37 168 0.71 # 54 # 605 # -1 # ID=14_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.355 3_28 - 486 KaiC PF06745.8 227 0.00033 14.3 0.1 1 1 3.8e-06 0.0011 12.5 0.0 17 60 234 276 223 320 0.74 # 23943 # 25400 # -1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.332 14_1 - 184 AAA_14 PF13173.1 128 4.8e-07 24.2 0.2 1 1 1.7e-08 8.6e-07 23.4 0.2 3 74 35 111 33 171 0.70 # 54 # 605 # -1 # ID=14_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.355 8_6 - 791 AAA_14 PF13173.1 128 5.3e-06 20.8 2.0 1 2 0.057 2.8 2.3 0.4 37 87 373 423 353 425 0.62 # 3354 # 5726 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 8_6 - 791 AAA_14 PF13173.1 128 5.3e-06 20.8 2.0 2 2 1.2e-06 6.1e-05 17.4 0.1 2 97 422 539 421 544 0.62 # 3354 # 5726 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_77 - 645 AAA_14 PF13173.1 128 3.5e-05 18.2 0.9 1 2 0.0003 0.015 9.7 0.1 7 87 252 358 249 365 0.71 # 62526 # 64460 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.362 1_77 - 645 AAA_14 PF13173.1 128 3.5e-05 18.2 0.9 2 2 0.0049 0.24 5.8 0.1 28 78 451 525 432 559 0.54 # 62526 # 64460 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.362 2_38 - 482 AAA_14 PF13173.1 128 3.7e-05 18.1 0.2 1 1 4.3e-06 0.00021 15.6 0.0 5 73 250 330 247 345 0.71 # 34390 # 35835 # 1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.328 4_11 - 201 AAA_14 PF13173.1 128 0.00021 15.6 0.2 1 1 1.5e-05 0.00072 13.9 0.0 3 78 2 75 1 113 0.73 # 5827 # 6429 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.343 1_46 - 113 AAA_14 PF13173.1 128 0.0007 14.0 0.2 1 1 1.6e-05 0.0008 13.8 0.2 6 73 1 72 1 98 0.66 # 37337 # 37675 # 1 # ID=1_46;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.283 2_38 - 482 AAA_29 PF13555.1 62 0.0019 12.2 0.0 1 1 3.6e-05 0.0036 11.3 0.0 25 41 249 265 236 276 0.84 # 34390 # 35835 # 1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.328 1_77 - 645 AAA_29 PF13555.1 62 0.0022 12.0 0.1 1 1 4.6e-05 0.0045 11.0 0.1 26 40 250 264 239 284 0.80 # 62526 # 64460 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.362 2_13 - 625 AAA_29 PF13555.1 62 0.0023 12.0 0.0 1 1 6.4e-05 0.0063 10.5 0.0 26 40 254 268 245 273 0.84 # 7747 # 9621 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 14_1 - 184 AAA PF00004.24 132 1.2e-07 26.4 0.0 1 1 1.3e-09 1.9e-07 25.8 0.0 2 70 38 107 37 146 0.75 # 54 # 605 # -1 # ID=14_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.355 4_11 - 201 AAA PF00004.24 132 0.0015 13.2 0.0 1 1 1.5e-05 0.0022 12.6 0.0 1 122 4 114 4 124 0.70 # 5827 # 6429 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.343 14_1 - 184 Bac_DnaA PF00308.13 219 8.6e-10 33.0 0.4 1 1 3.9e-12 1.2e-09 32.6 0.4 37 135 37 133 19 139 0.89 # 54 # 605 # -1 # ID=14_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.355 3_28 - 486 Sigma54_activat PF00158.21 168 1e-05 19.5 0.0 1 1 1.8e-07 1.7e-05 18.8 0.0 7 62 221 276 215 284 0.84 # 23943 # 25400 # -1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.332 14_1 - 184 Sigma54_activat PF00158.21 168 4e-05 17.6 0.1 1 2 3.5e-06 0.00034 14.5 0.0 18 66 30 78 16 86 0.81 # 54 # 605 # -1 # ID=14_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.355 14_1 - 184 Sigma54_activat PF00158.21 168 4e-05 17.6 0.1 2 2 0.06 5.9 0.8 0.0 96 117 98 120 89 138 0.74 # 54 # 605 # -1 # ID=14_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.355 1_61 - 444 Sigma54_activat PF00158.21 168 0.00016 15.6 0.0 1 1 3.5e-06 0.00035 14.5 0.0 14 46 204 236 197 257 0.80 # 47128 # 48459 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_77 - 645 MMR_HSR1 PF01926.18 116 0.00061 14.2 0.0 1 2 6.6e-05 0.0098 10.3 0.0 4 61 252 307 250 372 0.66 # 62526 # 64460 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.362 1_77 - 645 MMR_HSR1 PF01926.18 116 0.00061 14.2 0.0 2 2 0.079 12 0.4 0.0 44 65 430 470 404 541 0.55 # 62526 # 64460 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.362 2_38 - 482 MMR_HSR1 PF01926.18 116 0.0025 12.2 0.4 1 1 4.8e-05 0.0071 10.8 0.0 2 58 250 331 249 409 0.54 # 34390 # 35835 # 1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.328 8_6 - 791 DUF258 PF03193.11 161 1.8e-05 18.4 0.1 1 1 6.5e-07 4.9e-05 17.0 0.1 17 57 403 445 387 475 0.77 # 3354 # 5726 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 14_1 - 184 DUF258 PF03193.11 161 8.7e-05 16.2 0.0 1 1 2e-06 0.00015 15.5 0.0 28 56 27 55 3 108 0.73 # 54 # 605 # -1 # ID=14_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.355 3_14 - 967 DUF258 PF03193.11 161 0.00081 13.0 0.0 1 1 2.2e-05 0.0016 12.1 0.0 19 61 392 434 380 444 0.70 # 13613 # 16513 # -1 # ID=3_14;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.372 3_8 - 863 DUF258 PF03193.11 161 0.0021 11.7 0.0 1 1 5.9e-05 0.0044 10.7 0.0 22 56 480 514 463 522 0.84 # 8107 # 10695 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.365 2_29 - 754 TraG-D_C PF12696.2 128 4.1e-39 127.8 0.2 1 1 2.5e-40 1.8e-38 125.7 0.1 3 127 406 530 404 531 0.92 # 23614 # 25875 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.311 1_71 - 660 TraG-D_C PF12696.2 128 2.5e-32 105.9 0.7 1 1 8.5e-34 6.3e-32 104.6 0.1 1 125 367 482 367 485 0.89 # 54871 # 56850 # 1 # ID=1_71;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_44 - 284 TraG-D_C PF12696.2 128 3.8e-05 18.0 0.0 1 1 2.2e-06 0.00016 16.0 0.0 16 85 157 218 144 223 0.86 # 35952 # 36803 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.302 3_14 - 967 TraG-D_C PF12696.2 128 4.4e-05 17.8 0.1 1 1 1.8e-06 0.00014 16.2 0.0 4 45 667 708 665 736 0.81 # 13613 # 16513 # -1 # ID=3_14;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.372 2_37 - 379 AAA_31 PF13614.1 157 8.6e-28 91.7 0.2 1 1 2.2e-29 1.6e-27 90.8 0.2 1 157 116 269 116 269 0.97 # 33231 # 34367 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.288 3_29 - 272 AAA_31 PF13614.1 157 6.4e-26 85.6 0.0 1 1 1.2e-27 9.2e-26 85.1 0.0 1 152 3 172 3 177 0.95 # 25430 # 26245 # -1 # ID=3_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.305 2_35 - 430 AAA_31 PF13614.1 157 1.9e-11 38.6 0.1 1 1 2.9e-12 2.2e-10 35.2 0.0 2 154 150 299 149 301 0.88 # 31155 # 32444 # 1 # ID=2_35;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.316 1_32 - 309 AAA_31 PF13614.1 157 7.5e-07 23.6 0.5 1 1 2.1e-08 1.6e-06 22.6 0.5 10 153 14 160 12 163 0.67 # 26391 # 27317 # -1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 1_77 - 645 NTPase_1 PF03266.10 168 0.00023 15.4 0.2 1 1 5.2e-06 0.00078 13.6 0.2 3 54 251 302 250 335 0.81 # 62526 # 64460 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.362 14_1 - 184 NTPase_1 PF03266.10 168 0.0007 13.8 0.3 1 2 0.0037 0.55 4.3 0.1 3 27 38 62 36 80 0.71 # 54 # 605 # -1 # ID=14_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.355 14_1 - 184 NTPase_1 PF03266.10 168 0.0007 13.8 0.3 2 2 0.00022 0.033 8.3 0.0 81 107 82 107 57 143 0.64 # 54 # 605 # -1 # ID=14_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.355 14_1 - 184 AAA_33 PF13671.1 143 0.00071 13.9 0.1 1 1 3.3e-06 0.001 13.4 0.1 2 39 37 79 37 155 0.78 # 54 # 605 # -1 # ID=14_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.355 8_6 - 791 AAA_30 PF13604.1 196 2.7e-20 67.2 0.0 1 1 2.3e-22 7e-20 65.9 0.0 2 173 408 584 407 597 0.87 # 3354 # 5726 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 3_8 - 863 GBP PF02263.14 260 0.00051 13.6 0.0 1 1 4.6e-06 0.0014 12.2 0.0 9 43 482 515 478 565 0.73 # 8107 # 10695 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.365 2_38 - 482 FtsK_SpoIIIE PF01580.13 205 9.1e-05 16.4 0.0 1 1 1.6e-06 0.00024 15.1 0.0 27 61 228 270 214 275 0.73 # 34390 # 35835 # 1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.328 3_28 - 486 FtsK_SpoIIIE PF01580.13 205 0.0011 12.9 0.0 1 1 1.4e-05 0.0021 12.0 0.0 32 64 230 262 219 283 0.77 # 23943 # 25400 # -1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.332 13_2 - 69 Lon_C PF05362.8 205 0.00033 14.4 0.0 1 1 1.2e-06 0.00035 14.4 0.0 58 106 20 68 8 69 0.91 # 1378 # 1584 # 1 # ID=13_2;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.314 1_61 - 444 ABC_tran PF00005.22 137 0.00059 14.6 0.0 1 1 2e-05 0.0015 13.3 0.0 11 51 212 252 206 354 0.76 # 47128 # 48459 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 14_1 - 184 ABC_tran PF00005.22 137 0.00069 14.4 0.1 1 1 2.8e-05 0.0021 12.8 0.0 8 31 31 54 23 94 0.83 # 54 # 605 # -1 # ID=14_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.355 3_28 - 486 ABC_tran PF00005.22 137 0.00098 13.9 0.0 1 1 2.6e-05 0.0019 12.9 0.0 10 47 235 272 229 367 0.74 # 23943 # 25400 # -1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.332 1_77 - 645 ABC_tran PF00005.22 137 0.00098 13.9 0.2 1 1 3.7e-05 0.0027 12.4 0.0 16 33 252 269 243 359 0.93 # 62526 # 64460 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.362 14_1 - 184 RuvB_N PF05496.7 234 0.00033 14.2 0.2 1 2 8.6e-06 0.0026 11.3 0.1 48 86 32 68 10 126 0.66 # 54 # 605 # -1 # ID=14_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.355 14_1 - 184 RuvB_N PF05496.7 234 0.00033 14.2 0.2 2 2 0.016 4.8 0.6 0.0 214 231 147 164 121 167 0.73 # 54 # 605 # -1 # ID=14_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.355 8_6 - 791 AAA_19 PF13245.1 76 5.7e-09 30.1 0.0 1 1 3.8e-11 1.1e-08 29.2 0.0 7 74 420 485 414 487 0.83 # 3354 # 5726 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 8_6 - 791 Helicase_RecD PF05127.9 177 0.00012 16.2 0.0 1 1 1e-06 0.00031 14.8 0.0 2 120 427 537 426 539 0.69 # 3354 # 5726 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 1_77 - 645 AAA_10 PF12846.2 304 5.6e-60 197.7 1.0 1 1 1.8e-61 6.6e-60 197.5 0.1 3 301 249 598 247 602 0.88 # 62526 # 64460 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.362 2_13 - 625 AAA_10 PF12846.2 304 2.2e-46 153.1 0.2 1 1 8.8e-48 3.3e-46 152.5 0.2 1 299 251 564 251 567 0.91 # 7747 # 9621 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 3_8 - 863 AAA_10 PF12846.2 304 1.5e-33 110.9 0.0 1 1 6.8e-35 2.5e-33 110.2 0.0 3 303 495 804 493 805 0.82 # 8107 # 10695 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.365 3_14 - 967 AAA_10 PF12846.2 304 1.2e-15 52.2 0.0 1 1 6.8e-17 2.5e-15 51.1 0.0 5 299 411 737 408 740 0.76 # 13613 # 16513 # -1 # ID=3_14;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.372 2_29 - 754 AAA_10 PF12846.2 304 1.4e-10 35.6 0.4 1 1 3.6e-12 1.4e-10 35.6 0.4 1 300 155 483 155 487 0.68 # 23614 # 25875 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.311 2_79 - 79 AAA_10 PF12846.2 304 0.0002 15.3 0.0 1 1 5.4e-06 0.0002 15.3 0.0 39 73 6 41 2 75 0.81 # 59411 # 59647 # 1 # ID=2_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.266 4_11 - 201 AAA_10 PF12846.2 304 0.00065 13.6 0.1 1 2 0.018 0.67 3.7 0.2 5 33 5 33 2 50 0.83 # 5827 # 6429 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.343 4_11 - 201 AAA_10 PF12846.2 304 0.00065 13.6 0.1 2 2 0.00099 0.037 7.8 0.0 218 268 56 110 43 124 0.84 # 5827 # 6429 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.343 14_1 - 184 AAA_10 PF12846.2 304 0.0011 12.8 0.1 1 1 0.00015 0.0056 10.5 0.1 3 29 36 62 34 103 0.82 # 54 # 605 # -1 # ID=14_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.355 14_1 - 184 ResIII PF04851.10 184 0.00019 15.7 0.1 1 1 3.7e-05 0.0022 12.3 0.1 15 56 25 68 10 147 0.58 # 54 # 605 # -1 # ID=14_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.355 3_28 - 486 ResIII PF04851.10 184 0.00042 14.6 0.0 1 1 1.2e-05 0.00073 13.8 0.0 22 61 226 274 152 309 0.82 # 23943 # 25400 # -1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.332 1_61 - 444 ResIII PF04851.10 184 0.0012 13.1 0.3 1 1 7.4e-05 0.0044 11.3 0.2 22 42 199 229 120 250 0.71 # 47128 # 48459 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_77 - 645 ResIII PF04851.10 184 0.0014 12.9 1.0 1 1 4.8e-05 0.0029 11.9 0.1 88 170 451 535 423 550 0.66 # 62526 # 64460 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.362 3_14 - 967 ResIII PF04851.10 184 0.0018 12.5 0.0 1 1 3.1e-05 0.0018 12.5 0.0 24 64 406 456 390 481 0.69 # 13613 # 16513 # -1 # ID=3_14;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.372 1_77 - 645 Zot PF05707.7 193 3e-06 21.2 0.3 1 1 1.2e-07 1.8e-05 18.7 0.0 34 129 458 556 444 568 0.68 # 62526 # 64460 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.362 4_11 - 201 Zot PF05707.7 193 9.6e-06 19.6 0.1 1 1 8.7e-07 0.00013 15.9 0.1 68 162 48 138 2 166 0.78 # 5827 # 6429 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.343 8_6 - 791 Viral_helicase1 PF01443.13 234 1.7e-16 54.8 0.0 1 2 2.6e-09 3.9e-07 24.2 0.0 3 112 427 553 425 558 0.79 # 3354 # 5726 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 8_6 - 791 Viral_helicase1 PF01443.13 234 1.7e-16 54.8 0.0 2 2 4.7e-10 7e-08 26.7 0.0 184 233 702 747 608 748 0.79 # 3354 # 5726 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 14_1 - 184 Viral_helicase1 PF01443.13 234 0.00038 14.5 0.0 1 1 3.5e-06 0.00051 14.0 0.0 2 79 38 109 37 120 0.83 # 54 # 605 # -1 # ID=14_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.355 8_6 - 791 DUF2075 PF09848.4 352 3.1e-05 17.5 0.0 1 2 1e-06 0.00031 14.2 0.0 2 91 423 512 422 513 0.64 # 3354 # 5726 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 8_6 - 791 DUF2075 PF09848.4 352 3.1e-05 17.5 0.0 2 2 0.025 7.3 -0.2 0.0 310 352 711 750 695 750 0.64 # 3354 # 5726 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 3_28 - 486 PduV-EutP PF10662.4 143 0.001 13.0 0.2 1 1 8.2e-06 0.0024 11.8 0.2 2 35 237 270 236 277 0.88 # 23943 # 25400 # -1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.332 3_28 - 486 DEAD PF00270.24 169 0.0006 13.8 0.0 1 2 0.081 12 -0.2 0.0 117 142 47 73 26 89 0.79 # 23943 # 25400 # -1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.332 3_28 - 486 DEAD PF00270.24 169 0.0006 13.8 0.0 2 2 2.7e-05 0.004 11.1 0.0 11 52 232 271 223 327 0.79 # 23943 # 25400 # -1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.332 1_61 - 444 DEAD PF00270.24 169 0.00067 13.6 0.0 1 1 9.2e-06 0.0014 12.6 0.0 9 48 206 243 201 398 0.72 # 47128 # 48459 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 2_29 - 754 TrwB_AAD_bind PF10412.4 386 5.4e-40 131.6 0.0 1 1 2.3e-41 9.7e-40 130.7 0.0 12 380 152 544 143 547 0.85 # 23614 # 25875 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.311 1_71 - 660 TrwB_AAD_bind PF10412.4 386 3.9e-14 46.5 0.0 1 2 0.02 0.84 2.6 0.0 69 163 31 127 23 137 0.82 # 54871 # 56850 # 1 # ID=1_71;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_71 - 660 TrwB_AAD_bind PF10412.4 386 3.9e-14 46.5 0.0 2 2 3.7e-14 1.6e-12 41.2 0.0 218 364 336 482 319 500 0.79 # 54871 # 56850 # 1 # ID=1_71;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 2_13 - 625 TrwB_AAD_bind PF10412.4 386 1.3e-06 21.6 0.3 1 1 1.6e-07 6.7e-06 19.3 0.0 14 61 250 297 236 317 0.83 # 7747 # 9621 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 3_14 - 967 TrwB_AAD_bind PF10412.4 386 1.1e-05 18.6 0.2 1 2 0.00028 0.012 8.6 0.1 18 40 410 432 397 435 0.84 # 13613 # 16513 # -1 # ID=3_14;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.372 3_14 - 967 TrwB_AAD_bind PF10412.4 386 1.1e-05 18.6 0.2 2 2 0.00056 0.024 7.6 0.0 223 287 640 707 615 732 0.76 # 13613 # 16513 # -1 # ID=3_14;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.372 3_28 - 486 TrwB_AAD_bind PF10412.4 386 0.00051 13.1 0.0 1 1 1.9e-05 0.00079 12.5 0.0 13 51 234 272 224 291 0.85 # 23943 # 25400 # -1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.332 1_61 - 444 TrwB_AAD_bind PF10412.4 386 0.00088 12.4 0.0 1 1 3.6e-05 0.0015 11.6 0.0 15 61 212 258 206 311 0.78 # 47128 # 48459 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 3_8 - 863 TrwB_AAD_bind PF10412.4 386 0.0016 11.5 0.0 1 1 8e-05 0.0034 10.4 0.0 11 54 489 532 482 536 0.90 # 8107 # 10695 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.365 8_6 - 791 AAA_11 PF13086.1 236 2.4e-10 34.8 0.9 1 2 5.7e-07 0.00017 15.6 0.1 2 51 408 448 407 490 0.73 # 3354 # 5726 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 8_6 - 791 AAA_11 PF13086.1 236 2.4e-10 34.8 0.9 2 2 2.7e-07 8.2e-05 16.7 0.0 185 235 499 549 482 550 0.75 # 3354 # 5726 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 3_28 - 486 Sigma54_activ_2 PF14532.1 138 4.3e-05 18.0 0.0 1 1 2.7e-07 8.1e-05 17.1 0.0 6 83 221 300 216 337 0.71 # 23943 # 25400 # -1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.332 2_29 - 754 T4SS-DNA_transf PF02534.9 469 2.7e-83 274.5 6.4 1 1 2.8e-85 2.7e-83 274.5 6.4 44 449 155 554 117 602 0.85 # 23614 # 25875 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.311 1_71 - 660 T4SS-DNA_transf PF02534.9 469 6.2e-34 111.7 3.4 1 2 1.3e-14 1.3e-12 41.5 0.3 90 258 9 191 1 196 0.71 # 54871 # 56850 # 1 # ID=1_71;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_71 - 660 T4SS-DNA_transf PF02534.9 469 6.2e-34 111.7 3.4 2 2 1.5e-23 1.5e-21 70.9 0.2 259 432 321 491 302 507 0.90 # 54871 # 56850 # 1 # ID=1_71;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_44 - 284 T4SS-DNA_transf PF02534.9 469 2.5e-09 30.6 0.2 1 2 1.6e-09 1.6e-07 24.6 0.0 48 102 27 81 9 92 0.87 # 35952 # 36803 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.302 1_44 - 284 T4SS-DNA_transf PF02534.9 469 2.5e-09 30.6 0.2 2 2 0.0027 0.26 4.2 0.1 285 383 121 212 94 222 0.73 # 35952 # 36803 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.302 8_6 - 791 PIF1 PF05970.9 364 2.4e-09 31.0 0.2 1 1 2.5e-11 7.5e-09 29.4 0.0 21 159 421 549 407 646 0.78 # 3354 # 5726 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 2_38 - 482 GTP_EFTU PF00009.22 188 0.00013 15.9 2.5 1 1 4.4e-07 0.00013 15.9 0.0 3 26 247 270 245 289 0.88 # 34390 # 35835 # 1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.328 14_1 - 184 RNA_helicase PF00910.17 107 4.4e-06 21.3 0.0 1 1 8.3e-08 8.2e-06 20.4 0.0 1 79 37 123 37 146 0.85 # 54 # 605 # -1 # ID=14_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.355 1_61 - 444 RNA_helicase PF00910.17 107 7.7e-05 17.3 0.0 1 1 2.5e-06 0.00025 15.7 0.0 1 90 215 307 215 318 0.77 # 47128 # 48459 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 3_28 - 486 RNA_helicase PF00910.17 107 0.0014 13.3 0.0 1 1 3.7e-05 0.0037 11.9 0.0 1 23 239 262 239 313 0.69 # 23943 # 25400 # -1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.332 1_77 - 645 UPF0079 PF02367.12 123 0.0022 12.1 0.0 1 2 0.0001 0.031 8.4 0.0 21 41 253 273 249 292 0.88 # 62526 # 64460 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.362 1_77 - 645 UPF0079 PF02367.12 123 0.0022 12.1 0.0 2 2 0.026 7.9 0.6 0.0 11 31 427 447 422 453 0.88 # 62526 # 64460 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.362 3_40 - 196 TrkA_N PF02254.13 116 0.00065 14.2 0.4 1 2 3.4e-05 0.01 10.3 0.2 34 107 20 99 4 109 0.78 # 34431 # 35018 # -1 # ID=3_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 3_40 - 196 TrkA_N PF02254.13 116 0.00065 14.2 0.4 2 2 0.013 3.8 2.0 0.0 9 43 134 167 131 179 0.83 # 34431 # 35018 # -1 # ID=3_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 14_1 - 184 AAA_24 PF13479.1 213 0.0011 12.9 0.3 1 1 1.4e-05 0.0043 11.1 0.3 5 23 36 54 32 108 0.80 # 54 # 605 # -1 # ID=14_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.355 8_6 - 791 UvrD-helicase PF00580.16 315 1.4e-07 25.5 0.1 1 1 4.6e-10 1.4e-07 25.5 0.1 1 68 408 482 408 512 0.74 # 3354 # 5726 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 14_1 - 184 NACHT PF05729.7 166 0.00022 15.4 0.4 1 1 3.2e-06 0.00094 13.3 0.4 3 43 37 71 35 140 0.84 # 54 # 605 # -1 # ID=14_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.355 14_1 - 184 AAA_25 PF13481.1 194 2.9e-07 24.5 0.0 1 1 4.5e-09 1.3e-06 22.3 0.0 22 64 23 65 3 158 0.81 # 54 # 605 # -1 # ID=14_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.355 8_6 - 791 AAA_5 PF07728.9 139 3e-06 21.4 0.0 1 1 6.4e-08 9.5e-06 19.8 0.0 3 86 426 525 424 529 0.89 # 3354 # 5726 # 1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.285 14_1 - 184 AAA_5 PF07728.9 139 0.0019 12.4 0.1 1 1 2.1e-05 0.0031 11.7 0.1 2 28 37 66 36 128 0.76 # 54 # 605 # -1 # ID=14_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.355 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/2b4f5ab7-c285-4d19-a029-24c396fc7f82 # Target file: checkm_output/bins/pGCA_000338755.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000338755.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/2b4f5ab7-c285-4d19-a029-24c396fc7f82 checkm_output/bins/pGCA_000338755.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:40:57 2020 # [ok]