# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_2 - 223 Seryl_tRNA_N PF02403.17 108 0.0036 9.0 8.6 1 2 1.1e-05 0.00043 11.9 3.2 32 95 13 77 3 82 0.87 # 409 # 1077 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.628 2_2 - 223 Seryl_tRNA_N PF02403.17 108 0.0036 9.0 8.6 2 2 0.043 1.7 0.4 0.0 20 57 77 114 72 139 0.51 # 409 # 1077 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.628 1_15 - 197 MipZ PF09140.6 261 3.8e-11 34.1 0.1 1 2 9.9e-09 4e-07 20.9 0.0 3 47 4 48 2 67 0.85 # 10996 # 11586 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_15 - 197 MipZ PF09140.6 261 3.8e-11 34.1 0.1 2 2 6.2e-06 0.00025 11.8 0.0 97 174 73 149 49 152 0.76 # 10996 # 11586 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_15 - 197 YhjQ PF06564.7 244 3e-08 24.9 0.0 1 2 1.2e-06 4.7e-05 14.4 0.0 2 41 2 41 1 49 0.88 # 10996 # 11586 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_15 - 197 YhjQ PF06564.7 244 3e-08 24.9 0.0 2 2 7.3e-05 0.0029 8.5 0.0 104 210 61 174 45 177 0.71 # 10996 # 11586 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_15 - 197 ATP_bind_1 PF03029.12 238 0.00043 11.5 0.0 1 2 0.00073 0.029 5.4 0.0 6 41 12 47 10 71 0.84 # 10996 # 11586 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_15 - 197 ATP_bind_1 PF03029.12 238 0.00043 11.5 0.0 2 2 0.0017 0.068 4.2 0.0 88 101 71 85 49 91 0.68 # 10996 # 11586 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_15 - 197 SRP54 PF00448.17 196 8.1e-05 13.7 0.0 1 1 9e-06 0.00036 11.6 0.0 11 97 12 88 3 123 0.78 # 10996 # 11586 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_15 - 197 ArsA_ATPase PF02374.10 305 9e-11 32.9 0.1 1 1 4.3e-12 1.7e-10 32.0 0.1 2 57 3 57 2 82 0.87 # 10996 # 11586 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_15 - 197 VirC1 PF07015.6 231 4.9e-13 40.2 0.0 1 1 4.3e-14 1.7e-12 38.4 0.0 1 185 1 172 1 186 0.86 # 10996 # 11586 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_15 - 197 Fer4_NifH PF00142.13 273 0.00025 11.9 0.0 1 1 1.3e-05 0.00051 10.8 0.0 5 39 7 41 2 48 0.88 # 10996 # 11586 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_17 - 296 AAA_23 PF13476.1 202 0.01 7.7 10.8 1 2 0.00013 0.0052 8.7 2.0 155 197 90 158 47 163 0.71 # 11860 # 12747 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.602 1_17 - 296 AAA_23 PF13476.1 202 0.01 7.7 10.8 2 2 0.0032 0.13 4.1 1.8 158 196 239 289 168 291 0.52 # 11860 # 12747 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.602 1_17 - 296 AAA_13 PF13166.1 712 0.0012 8.8 17.7 1 1 4e-05 0.0016 8.5 17.2 282 455 91 288 88 292 0.79 # 11860 # 12747 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.602 1_15 - 197 CbiA PF01656.18 195 2.3e-20 64.4 0.0 1 1 1.5e-21 5.9e-20 63.1 0.0 1 190 4 166 4 171 0.70 # 10996 # 11586 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_15 - 197 AAA_31 PF13614.1 157 9.7e-14 43.2 0.0 1 2 2.7e-10 1.1e-08 26.8 0.0 1 48 2 49 2 54 0.88 # 10996 # 11586 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_15 - 197 AAA_31 PF13614.1 157 9.7e-14 43.2 0.0 2 2 2e-06 8.1e-05 14.2 0.0 117 154 74 107 64 110 0.88 # 10996 # 11586 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 2_14 - 569 VirE PF05272.6 198 9.4e-34 108.2 0.0 1 1 3.8e-35 1.5e-33 107.5 0.0 2 193 273 463 272 468 0.86 # 5786 # 7492 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_15 - 197 AAA_24 PF13479.1 213 8.6e-07 20.3 0.0 1 1 3.6e-08 1.4e-06 19.6 0.0 11 88 10 94 5 97 0.80 # 10996 # 11586 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 2_17 - 215 AAA_25 PF13481.1 194 0.00011 13.3 0.4 1 2 0.023 0.9 0.5 0.0 158 184 9 35 2 38 0.78 # 8509 # 9153 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.636 2_17 - 215 AAA_25 PF13481.1 194 0.00011 13.3 0.4 2 2 7.9e-06 0.00031 11.8 0.3 80 173 13 124 11 137 0.68 # 8509 # 9153 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.636 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/9ad51736-110c-4440-a3af-05e439b48ffe # Target file: checkm_output/bins/pGCA_000327065.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000327065.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/9ad51736-110c-4440-a3af-05e439b48ffe checkm_output/bins/pGCA_000327065.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:40:52 2020 # [ok]