# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 4_5 - 277 ATP_bind_3 PF01171.15 182 1.7e-06 19.9 0.0 1 1 4e-08 2.5e-06 19.3 0.0 2 108 21 128 20 139 0.80 # 2918 # 3748 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.466 3_6 - 539 UPF0020 PF01170.13 180 1e-06 20.6 0.0 1 1 3.4e-08 2.1e-06 19.6 0.0 25 118 228 319 217 328 0.85 # 2887 # 4503 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.438 2_10 - 279 MipZ PF09140.6 261 3.4e-07 21.8 0.4 1 2 1e-05 0.00065 11.0 0.1 3 40 5 43 3 51 0.80 # 4941 # 5777 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 2_10 - 279 MipZ PF09140.6 261 3.4e-07 21.8 0.4 2 2 4.8e-05 0.003 8.8 0.0 67 127 92 153 72 163 0.85 # 4941 # 5777 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 2_10 - 279 YhjQ PF06564.7 244 3.2e-06 18.8 0.0 1 1 7e-07 4.4e-05 15.1 0.0 9 150 10 157 2 181 0.72 # 4941 # 5777 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 2_8 - 246 Usp PF00582.21 140 0.06 5.8 8.2 1 2 0.00045 0.028 6.9 2.2 17 90 18 84 15 102 0.78 # 2768 # 3505 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.455 2_8 - 246 Usp PF00582.21 140 0.06 5.8 8.2 2 2 0.013 0.78 2.2 0.4 59 101 194 240 150 243 0.70 # 2768 # 3505 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_10 - 819 DUF87 PF01935.12 229 4.2e-07 22.2 0.1 1 1 4e-08 2.5e-06 19.7 0.0 28 98 464 529 463 624 0.84 # 10822 # 13278 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.458 1_10 - 819 AAA_22 PF13401.1 131 5e-05 15.7 1.4 1 3 0.00027 0.017 7.5 0.0 3 23 458 478 454 505 0.82 # 10822 # 13278 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.458 1_10 - 819 AAA_22 PF13401.1 131 5e-05 15.7 1.4 2 3 0.0088 0.55 2.6 0.0 73 104 656 688 639 704 0.70 # 10822 # 13278 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.458 1_10 - 819 AAA_22 PF13401.1 131 5e-05 15.7 1.4 3 3 0.05 3.1 0.2 0.2 70 113 711 753 694 773 0.65 # 10822 # 13278 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.458 4_5 - 277 Arginosuc_synth PF00764.14 388 0.0002 12.7 0.1 1 1 4.7e-06 0.00029 12.1 0.1 2 52 23 75 22 93 0.77 # 2918 # 3748 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.466 4_5 - 277 NAD_synthase PF02540.12 242 1.4e-12 39.3 0.1 1 1 6.8e-14 4.2e-12 37.6 0.1 18 91 18 91 8 174 0.78 # 2918 # 3748 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.466 2_10 - 279 ArsA_ATPase PF02374.10 305 5.7e-07 21.0 0.5 1 1 3.5e-08 2.2e-06 19.1 0.5 9 64 11 63 3 137 0.62 # 4941 # 5777 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 4_5 - 277 TIGR02432 TIGR02432 189 2.2e-05 16.4 0.0 1 1 4.8e-07 2.9e-05 16.0 0.0 2 99 21 116 20 131 0.63 # 2918 # 3748 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.466 2_10 - 279 Fer4_NifH PF00142.13 273 0.00017 13.0 0.4 1 2 1.6e-05 0.001 10.5 0.1 8 46 11 50 5 82 0.86 # 4941 # 5777 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 2_10 - 279 Fer4_NifH PF00142.13 273 0.00017 13.0 0.4 2 2 0.021 1.3 0.3 0.0 159 185 211 237 141 271 0.57 # 4941 # 5777 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 4_5 - 277 QueC PF06508.8 210 2.4e-05 15.9 0.1 1 1 1.3e-06 7.8e-05 14.2 0.0 3 57 22 77 20 96 0.82 # 2918 # 3748 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.466 2_10 - 279 CbiA PF01656.18 195 1.4e-29 95.1 0.1 1 1 3.1e-31 1.9e-29 94.7 0.1 2 193 6 225 5 227 0.80 # 4941 # 5777 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 2_4 - 73 Glyco_hydro_4 PF02056.11 183 0.00036 12.1 0.0 1 1 5.8e-06 0.00036 12.1 0.0 53 111 12 70 1 72 0.83 # 1058 # 1276 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 5_1 - 228 HI0933_like PF03486.9 409 0.00039 11.1 0.0 1 1 1e-05 0.00064 10.4 0.0 287 363 125 199 86 211 0.74 # 74 # 757 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 4_5 - 277 PAPS_reduct PF01507.14 174 0.00042 12.4 0.0 1 1 1.2e-05 0.00073 11.6 0.0 2 72 21 93 20 133 0.72 # 2918 # 3748 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.466 3_6 - 539 N6_Mtase PF02384.11 311 7.3e-119 388.6 0.0 1 1 1.8e-120 1.1e-118 388.0 0.0 2 308 181 489 180 492 0.96 # 2887 # 4503 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.438 1_14 - 632 TraG-D_C PF12696.2 128 2.6e-31 100.4 0.2 1 1 9.7e-33 6e-31 99.2 0.0 2 126 416 532 415 534 0.87 # 14692 # 16587 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 4_5 - 277 Asn_synthase PF00733.16 255 1e-07 23.9 0.0 1 1 2.7e-09 1.7e-07 23.2 0.0 14 95 15 100 7 114 0.79 # 2918 # 3748 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.466 2_10 - 279 AAA_31 PF13614.1 157 1.4e-11 36.8 0.0 1 1 3.5e-13 2.2e-11 36.2 0.0 3 154 5 160 3 162 0.86 # 4941 # 5777 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.392 3_6 - 539 Methyltransf_26 PF13659.1 117 2.6e-12 39.1 0.0 1 1 1.5e-13 9.6e-12 37.3 0.0 3 116 234 368 232 369 0.78 # 2887 # 4503 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.438 2_21 - 84 AAA_30 PF13604.1 196 0.00011 14.0 0.0 1 1 1.8e-06 0.00011 14.0 0.0 47 88 11 52 3 76 0.83 # 15685 # 15936 # 1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.444 1_10 - 819 FtsK_SpoIIIE PF01580.13 205 0.0003 12.5 0.0 1 1 1.3e-05 0.00079 11.1 0.0 23 64 441 485 428 512 0.74 # 10822 # 13278 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.458 3_6 - 539 Eco57I PF07669.6 106 1.2e-09 30.7 0.0 1 1 1.2e-10 7.3e-09 28.2 0.0 3 104 308 418 306 420 0.87 # 2887 # 4503 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.438 1_14 - 632 AAA_19 PF13245.1 76 8.1e-05 14.6 0.2 1 1 3.3e-06 0.00021 13.3 0.2 9 28 148 167 144 169 0.85 # 14692 # 16587 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 1_10 - 819 AAA_10 PF12846.2 304 8.5e-56 181.8 3.3 1 2 0.063 2 -0.1 0.1 87 135 116 162 18 236 0.58 # 10822 # 13278 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.458 1_10 - 819 AAA_10 PF12846.2 304 8.5e-56 181.8 3.3 2 2 2.8e-57 8.6e-56 181.7 0.2 2 303 460 753 459 754 0.91 # 10822 # 13278 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.458 1_14 - 632 AAA_10 PF12846.2 304 1.5e-07 23.3 0.0 1 1 1.2e-08 3.6e-07 22.0 0.0 2 300 150 493 149 496 0.68 # 14692 # 16587 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 3_7 - 868 ResIII PF04851.10 184 3e-34 110.6 0.9 1 1 9.8e-36 3e-34 110.6 0.9 4 183 73 243 70 244 0.92 # 4517 # 7120 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.451 1_14 - 632 ResIII PF04851.10 184 0.00071 11.6 1.6 1 1 2.9e-05 0.00089 11.3 0.1 24 95 148 217 101 255 0.74 # 14692 # 16587 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 3_7 - 868 DEAD PF00270.24 169 9.2e-11 33.7 4.9 1 2 3.8e-12 2.4e-10 32.4 0.1 3 141 76 227 74 250 0.70 # 4517 # 7120 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.451 3_7 - 868 DEAD PF00270.24 169 9.2e-11 33.7 4.9 2 2 0.0047 0.29 2.8 0.1 45 96 329 436 269 454 0.69 # 4517 # 7120 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.451 1_14 - 632 TrwB_AAD_bind PF10412.4 386 9.1e-25 79.2 0.0 1 2 1.9e-08 1.2e-06 19.5 0.0 15 135 149 277 140 289 0.78 # 14692 # 16587 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 1_14 - 632 TrwB_AAD_bind PF10412.4 386 9.1e-25 79.2 0.0 2 2 5.7e-20 3.5e-18 57.5 0.0 202 377 369 544 320 552 0.87 # 14692 # 16587 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 1_14 - 632 T4SS-DNA_transf PF02534.9 469 9.9e-62 201.1 0.0 1 1 2.2e-63 1.3e-61 200.7 0.0 44 446 145 554 105 580 0.86 # 14692 # 16587 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 4_5 - 277 tRNA_Me_trans PF03054.11 356 0.00024 11.9 0.2 1 2 4.6e-05 0.0029 8.4 0.1 1 37 19 56 19 83 0.68 # 2918 # 3748 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.466 4_5 - 277 tRNA_Me_trans PF03054.11 356 0.00024 11.9 0.2 2 2 0.0059 0.37 1.4 0.0 169 193 151 175 137 181 0.83 # 2918 # 3748 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.466 1_10 - 819 AAA_25 PF13481.1 194 0.00012 13.7 0.3 1 2 0.022 1.4 0.5 0.1 98 152 348 395 331 401 0.70 # 10822 # 13278 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.458 1_10 - 819 AAA_25 PF13481.1 194 0.00012 13.7 0.3 2 2 6e-05 0.0037 8.9 0.0 34 58 460 484 441 511 0.75 # 10822 # 13278 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.458 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/5ab02bd8-9e44-4043-9783-089c81a12e41 # Target file: checkm_output/bins/pGCA_000318035.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000318035.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/5ab02bd8-9e44-4043-9783-089c81a12e41 checkm_output/bins/pGCA_000318035.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:40:51 2020 # [ok]