# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_9 - 546 Stn1 PF10451.4 256 1.8e-05 13.5 0.6 1 1 6.4e-06 7.7e-05 11.5 0.9 133 234 4 113 2 131 0.76 # 8630 # 10267 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.365 1_4 - 578 NAD_binding_9 PF13454.1 156 7e-31 97.0 0.0 1 1 9.8e-32 1.2e-30 96.3 0.0 1 156 5 166 5 166 0.95 # 2791 # 4524 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=3bp;gc_cont=0.314 1_9 - 546 UPF0079 PF02367.12 123 6.6e-05 12.5 0.2 1 2 0.0066 0.079 2.5 0.0 70 101 247 278 238 293 0.78 # 8630 # 10267 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.365 1_9 - 546 UPF0079 PF02367.12 123 6.6e-05 12.5 0.2 2 2 0.00023 0.0027 7.3 0.1 58 101 321 366 313 385 0.77 # 8630 # 10267 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.365 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/0b40cb28-9a9a-4a64-8e01-3efb802398a7 # Target file: checkm_output/bins/pGCA_000317875.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000317875.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/0b40cb28-9a9a-4a64-8e01-3efb802398a7 checkm_output/bins/pGCA_000317875.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:40:48 2020 # [ok]