# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 223 cobW PF02492.14 178 1.8e-05 14.8 0.0 1 1 2.1e-06 4e-05 13.7 0.0 3 31 19 46 17 58 0.81 # 744 # 1412 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=3bp;gc_cont=0.338 1_15 - 93 Seryl_tRNA_N PF02403.17 108 0.0011 9.6 9.9 1 1 0.00024 0.0045 7.6 10.0 29 97 13 88 7 90 0.67 # 16156 # 16434 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.262 1_2 - 223 DUF87 PF01935.12 229 0.00038 10.9 6.4 1 2 7.4e-05 0.0014 9.0 1.4 25 44 18 37 12 51 0.92 # 744 # 1412 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=3bp;gc_cont=0.338 1_2 - 223 DUF87 PF01935.12 229 0.00038 10.9 6.4 2 2 0.0013 0.024 5.0 0.3 78 183 58 158 39 208 0.71 # 744 # 1412 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=3bp;gc_cont=0.338 1_2 - 223 AAA_22 PF13401.1 131 1.1e-07 22.6 0.6 1 1 1.3e-08 2.5e-07 21.5 0.6 3 117 15 162 13 189 0.67 # 744 # 1412 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=3bp;gc_cont=0.338 1_2 - 223 AAA_15 PF13175.1 415 1e-07 21.8 11.6 1 2 6e-07 1.1e-05 15.1 3.3 7 57 3 102 1 126 0.62 # 744 # 1412 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=3bp;gc_cont=0.338 1_2 - 223 AAA_15 PF13175.1 415 1e-07 21.8 11.6 2 2 6.9e-06 0.00013 11.6 1.6 371 411 128 169 112 172 0.82 # 744 # 1412 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=3bp;gc_cont=0.338 1_2 - 223 AAA_17 PF13207.1 121 0.00011 13.6 0.2 1 1 1.6e-05 0.0003 12.2 0.2 3 20 20 47 19 183 0.59 # 744 # 1412 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=3bp;gc_cont=0.338 1_2 - 223 AAA_21 PF13304.1 303 1.4e-15 48.5 9.9 1 2 1.2e-09 1.1e-08 25.8 1.3 2 45 19 62 18 74 0.81 # 744 # 1412 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=3bp;gc_cont=0.338 1_2 - 223 AAA_21 PF13304.1 303 1.4e-15 48.5 9.9 2 2 8.9e-10 8.5e-09 26.2 4.5 165 299 67 170 49 174 0.76 # 744 # 1412 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=3bp;gc_cont=0.338 1_12 - 590 AAA_21 PF13304.1 303 4.4e-11 33.7 6.9 1 1 4.7e-12 4.4e-11 33.7 6.9 2 295 376 544 375 545 0.67 # 11787 # 13556 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=6bp;gc_cont=0.309 1_2 - 223 Miro PF08477.8 119 3.9e-05 14.7 0.0 1 2 9.8e-06 0.00019 12.6 0.0 3 39 20 53 19 90 0.74 # 744 # 1412 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=3bp;gc_cont=0.338 1_2 - 223 Miro PF08477.8 119 3.9e-05 14.7 0.0 2 2 0.085 1.6 -0.2 0.0 43 79 144 181 103 209 0.70 # 744 # 1412 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=3bp;gc_cont=0.338 1_2 - 223 MobB PF03205.9 140 0.0001 12.6 0.4 1 1 4.1e-05 0.00039 10.7 0.1 4 21 20 37 17 46 0.87 # 744 # 1412 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=3bp;gc_cont=0.338 1_12 - 590 MobB PF03205.9 140 0.00014 12.1 0.1 1 1 3.5e-05 0.00033 10.9 0.1 2 22 375 395 374 406 0.86 # 11787 # 13556 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=6bp;gc_cont=0.309 1_12 - 590 Zeta_toxin PF06414.7 201 8.4e-05 12.3 0.0 1 1 8e-06 0.00015 11.4 0.0 7 50 365 408 359 433 0.79 # 11787 # 13556 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=6bp;gc_cont=0.309 1_2 - 223 SMC_N PF02463.14 220 4.3e-11 33.0 1.8 1 2 1.4e-08 1.4e-07 21.5 0.2 23 62 15 51 3 85 0.80 # 744 # 1412 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=3bp;gc_cont=0.338 1_2 - 223 SMC_N PF02463.14 220 4.3e-11 33.0 1.8 2 2 2e-05 0.00019 11.2 0.1 134 201 108 172 87 187 0.72 # 744 # 1412 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=3bp;gc_cont=0.338 1_12 - 590 SMC_N PF02463.14 220 2.4e-06 17.5 5.1 1 2 0.079 0.76 -0.5 0.0 135 165 232 328 102 334 0.68 # 11787 # 13556 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=6bp;gc_cont=0.309 1_12 - 590 SMC_N PF02463.14 220 2.4e-06 17.5 5.1 2 2 4.5e-07 4.3e-06 16.6 2.3 23 211 372 559 358 565 0.65 # 11787 # 13556 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=6bp;gc_cont=0.309 1_2 - 223 AAA_16 PF13191.1 185 1.6e-05 15.5 0.1 1 1 2.6e-06 2.4e-05 14.9 0.1 12 45 2 37 1 180 0.86 # 744 # 1412 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=3bp;gc_cont=0.338 1_12 - 590 AAA_16 PF13191.1 185 0.00018 12.1 0.0 1 1 3.7e-05 0.00035 11.1 0.0 23 119 372 454 361 514 0.60 # 11787 # 13556 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=6bp;gc_cont=0.309 1_12 - 590 AAA_23 PF13476.1 202 1.1e-05 16.4 9.9 1 2 0.096 0.91 0.3 0.9 126 150 199 222 182 351 0.48 # 11787 # 13556 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=6bp;gc_cont=0.309 1_12 - 590 AAA_23 PF13476.1 202 1.1e-05 16.4 9.9 2 2 1.2e-06 1.1e-05 16.4 9.9 10 144 363 523 342 588 0.61 # 11787 # 13556 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=6bp;gc_cont=0.309 1_2 - 223 AAA_23 PF13476.1 202 1.5e-05 16.0 7.6 1 1 3.2e-06 3.1e-05 14.9 7.6 14 78 10 71 2 221 0.55 # 744 # 1412 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=3bp;gc_cont=0.338 1_12 - 590 AAA_18 PF13238.1 129 0.00025 12.0 2.4 1 1 2.4e-05 0.00046 11.1 0.4 3 68 378 477 377 546 0.65 # 11787 # 13556 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=6bp;gc_cont=0.309 1_2 - 223 AAA_13 PF13166.1 712 4.3e-06 15.9 2.0 1 2 5.2e-05 0.00099 8.1 0.4 18 48 18 47 5 74 0.74 # 744 # 1412 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=3bp;gc_cont=0.338 1_2 - 223 AAA_13 PF13166.1 712 4.3e-06 15.9 2.0 2 2 8.4e-05 0.0016 7.4 0.0 527 578 128 177 117 191 0.79 # 744 # 1412 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=3bp;gc_cont=0.338 1_2 - 223 AAA_14 PF13173.1 128 6e-05 13.5 1.6 1 1 4.8e-05 0.00046 10.7 1.6 4 36 18 56 15 174 0.86 # 744 # 1412 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=3bp;gc_cont=0.338 1_12 - 590 AAA_14 PF13173.1 128 0.00051 10.5 5.0 1 1 3.5e-05 0.00034 11.1 0.4 2 46 373 418 372 549 0.82 # 11787 # 13556 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=6bp;gc_cont=0.309 1_2 - 223 TIGR03594 TIGR03594 432 3.3e-05 13.2 0.1 1 1 2.7e-06 5.2e-05 12.5 0.1 175 197 16 38 3 43 0.83 # 744 # 1412 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=3bp;gc_cont=0.338 1_2 - 223 AAA_29 PF13555.1 62 1.9e-08 24.4 0.1 1 1 3.3e-09 3.1e-08 23.7 0.1 15 43 9 36 4 50 0.80 # 744 # 1412 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=3bp;gc_cont=0.338 1_12 - 590 AAA_29 PF13555.1 62 2.5e-05 14.4 0.0 1 1 6.2e-06 5.9e-05 13.2 0.0 17 40 368 390 362 410 0.74 # 11787 # 13556 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=6bp;gc_cont=0.309 1_2 - 223 MMR_HSR1 PF01926.18 116 1.3e-06 19.0 0.7 1 1 8.4e-08 1.6e-06 18.7 0.7 3 30 20 52 18 196 0.82 # 744 # 1412 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=3bp;gc_cont=0.338 1_2 - 223 DUF258 PF03193.11 161 6.1e-06 16.1 0.0 1 1 1.1e-06 1.1e-05 15.3 0.0 34 58 14 39 3 65 0.78 # 744 # 1412 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=3bp;gc_cont=0.338 1_12 - 590 DUF258 PF03193.11 161 0.00014 11.7 0.0 1 1 4.5e-05 0.00043 10.1 0.0 6 65 342 403 338 431 0.78 # 11787 # 13556 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=6bp;gc_cont=0.309 1_2 - 223 AAA_33 PF13671.1 143 9e-05 13.0 0.0 1 1 6e-06 0.00011 12.6 0.0 4 24 21 41 19 160 0.76 # 744 # 1412 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=3bp;gc_cont=0.338 1_2 - 223 FtsK_SpoIIIE PF01580.13 205 1.9e-05 14.7 0.3 1 1 1.8e-06 3.4e-05 13.9 0.3 33 59 11 37 4 38 0.88 # 744 # 1412 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=3bp;gc_cont=0.338 1_2 - 223 Dynamin_N PF00350.18 168 7e-05 13.2 0.0 1 1 7.8e-06 0.00015 12.2 0.0 2 21 20 39 19 49 0.91 # 744 # 1412 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=3bp;gc_cont=0.338 1_12 - 590 ABC_tran PF00005.22 137 1.7e-26 83.7 0.0 1 1 3.1e-27 2.9e-26 83.0 0.0 2 136 364 516 363 517 0.81 # 11787 # 13556 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=6bp;gc_cont=0.309 1_2 - 223 ABC_tran PF00005.22 137 3.4e-22 69.8 0.0 1 1 5.7e-23 5.5e-22 69.1 0.0 3 135 8 137 6 139 0.88 # 744 # 1412 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=3bp;gc_cont=0.338 1_2 - 223 AAA_10 PF12846.2 304 3.1e-06 17.3 0.7 1 2 6e-07 1.1e-05 15.4 0.2 3 29 18 44 16 52 0.85 # 744 # 1412 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=3bp;gc_cont=0.338 1_2 - 223 AAA_10 PF12846.2 304 3.1e-06 17.3 0.7 2 2 0.025 0.47 0.3 0.0 127 145 103 135 46 177 0.57 # 744 # 1412 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=3bp;gc_cont=0.338 1_14 - 117 Methyltransf_31 PF13847.1 152 4e-05 13.8 1.6 1 1 2.3e-06 4.3e-05 13.7 1.6 46 126 3 87 1 114 0.80 # 15601 # 15951 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.285 1_12 - 590 DUF3584 PF12128.3 1201 3.6e-05 11.7 0.2 1 2 4.9e-06 9.3e-05 10.4 0.0 22 52 378 408 369 418 0.84 # 11787 # 13556 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=6bp;gc_cont=0.309 1_12 - 590 DUF3584 PF12128.3 1201 3.6e-05 11.7 0.2 2 2 0.031 0.6 -2.3 0.0 907 937 450 480 442 503 0.77 # 11787 # 13556 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=6bp;gc_cont=0.309 1_2 - 223 Viral_helicase1 PF01443.13 234 7.1e-05 12.9 0.0 1 1 7.5e-06 0.00014 11.9 0.0 3 26 21 46 19 70 0.74 # 744 # 1412 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAA;rbs_spacer=3bp;gc_cont=0.338 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/2e8f1417-6718-4de4-9012-96ef905cdc20 # Target file: checkm_output/bins/pGCA_000315955.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000315955.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/2e8f1417-6718-4de4-9012-96ef905cdc20 checkm_output/bins/pGCA_000315955.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:40:47 2020 # [ok]