# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 5_1 - 288 Saccharop_dh PF03435.13 386 5.2e-06 17.9 0.2 1 1 1.2e-07 7.8e-06 17.3 0.2 1 49 193 237 193 247 0.89 # 64 # 927 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 6_4 - 246 IstB_IS21 PF01695.12 178 3.7e-66 214.2 0.0 1 1 7.2e-68 4.7e-66 213.9 0.0 4 178 58 232 55 232 0.98 # 2625 # 3362 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.409 6_1 - 262 MipZ PF09140.6 261 2.6e-07 22.2 0.0 1 2 5.4e-06 0.00017 13.0 0.0 7 46 10 48 5 70 0.81 # 573 # 1358 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.346 6_1 - 262 MipZ PF09140.6 261 2.6e-07 22.2 0.0 2 2 0.0003 0.0096 7.2 0.0 87 122 111 146 74 153 0.79 # 573 # 1358 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.346 1_10 - 252 MipZ PF09140.6 261 3.2e-07 21.9 0.0 1 1 1.6e-08 5.2e-07 21.2 0.0 3 109 55 172 53 195 0.69 # 8951 # 9706 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.361 6_1 - 262 YhjQ PF06564.7 244 5.5e-11 34.5 0.0 1 1 1.4e-12 8.8e-11 33.9 0.0 10 154 12 159 5 171 0.82 # 573 # 1358 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.346 5_1 - 288 3HCDH_N PF02737.13 180 3.7e-05 15.7 0.2 1 1 9.8e-07 6.4e-05 15.0 0.2 1 41 192 232 192 255 0.90 # 64 # 927 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 6_4 - 246 AAA_22 PF13401.1 131 2e-07 23.5 0.5 1 1 1.8e-06 0.00012 14.6 0.1 4 109 101 185 98 203 0.63 # 2625 # 3362 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.409 5_1 - 288 NAD_binding_7 PF13241.1 103 2.4e-07 23.3 0.1 1 1 1.1e-08 7e-07 21.8 0.1 6 92 189 278 186 282 0.73 # 64 # 927 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 6_4 - 246 AAA_17 PF13207.1 121 1.1e-05 18.6 0.1 1 1 4.8e-07 3.1e-05 17.1 0.0 3 77 105 187 103 239 0.60 # 2625 # 3362 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.409 2_4 - 227 AAA_21 PF13304.1 303 0.00011 14.5 0.2 1 1 2.7e-06 0.00018 13.8 0.0 3 81 9 87 7 120 0.85 # 2003 # 2683 # 1 # ID=2_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.364 4_3 - 334 ADH_zinc_N_2 PF13602.1 127 1.8e-07 24.4 0.0 1 1 5e-09 3.3e-07 23.6 0.0 10 109 216 313 207 316 0.65 # 3002 # 4003 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.427 4_3 - 334 ADH_zinc_N PF00107.21 130 7e-15 47.1 0.0 1 1 2e-16 1.3e-14 46.2 0.0 3 129 175 294 174 295 0.91 # 3002 # 4003 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.427 6_1 - 262 ArsA_ATPase PF02374.10 305 5.8e-10 30.9 0.2 1 1 2e-10 4.3e-09 28.1 0.2 6 70 9 68 4 138 0.62 # 573 # 1358 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.346 1_10 - 252 ArsA_ATPase PF02374.10 305 6.3e-05 14.4 0.3 1 2 6.4e-05 0.0014 10.0 0.1 13 38 65 90 53 133 0.89 # 8951 # 9706 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.361 1_10 - 252 ArsA_ATPase PF02374.10 305 6.3e-05 14.4 0.3 2 2 0.013 0.28 2.4 0.0 117 136 150 171 143 173 0.79 # 8951 # 9706 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.361 6_4 - 246 ArsA_ATPase PF02374.10 305 0.00024 12.5 0.0 1 1 3e-05 0.00064 11.1 0.0 4 35 104 135 101 138 0.91 # 2625 # 3362 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.409 6_4 - 246 PhoH PF02562.11 205 2.4e-06 19.2 0.0 1 1 6.1e-08 4e-06 18.5 0.0 13 47 95 129 82 180 0.86 # 2625 # 3362 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.409 5_1 - 288 AdoHcyase_NAD PF00670.16 162 3.6e-12 38.7 0.1 1 1 9.8e-14 6.4e-12 37.9 0.1 21 108 188 275 181 281 0.89 # 64 # 927 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 5_1 - 288 Mur_ligase PF01225.20 83 0.00039 12.8 0.0 1 1 1.3e-05 0.00086 11.7 0.0 23 64 197 232 176 248 0.75 # 64 # 927 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 1_10 - 252 AAA_26 PF13500.1 199 2.1e-05 16.5 1.0 1 2 0.00019 0.012 7.5 0.1 1 33 53 85 53 87 0.88 # 8951 # 9706 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.361 1_10 - 252 AAA_26 PF13500.1 199 2.1e-05 16.5 1.0 2 2 0.00018 0.012 7.5 0.1 124 171 181 227 166 235 0.81 # 8951 # 9706 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.361 5_1 - 288 Shikimate_DH PF01488.15 135 1.9e-06 20.3 0.1 1 1 1.4e-07 4.5e-06 19.1 0.1 10 79 188 250 181 278 0.75 # 64 # 927 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 4_3 - 334 Shikimate_DH PF01488.15 135 5.5e-06 18.8 0.0 1 1 2.6e-07 8.6e-06 18.2 0.0 13 111 164 258 155 275 0.77 # 3002 # 4003 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.427 2_4 - 227 Zeta_toxin PF06414.7 201 7e-17 53.4 0.3 1 1 9.1e-18 5.9e-16 50.4 0.3 15 192 4 164 2 174 0.85 # 2003 # 2683 # 1 # ID=2_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.364 5_1 - 288 F420_oxidored PF03807.12 96 3.9e-06 19.6 0.3 1 1 1.4e-07 9.2e-06 18.4 0.3 2 52 193 238 192 258 0.80 # 64 # 927 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 5_1 - 288 FAD_binding_3 PF01494.14 356 0.00024 12.5 0.4 1 1 5.4e-06 0.00035 11.9 0.4 3 46 192 235 191 238 0.92 # 64 # 927 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 6_1 - 262 VirC1 PF07015.6 231 0.00037 11.9 0.1 1 2 4.5e-05 0.0029 9.0 0.0 8 40 10 42 4 55 0.85 # 573 # 1358 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.346 6_1 - 262 VirC1 PF07015.6 231 0.00037 11.9 0.1 2 2 0.017 1.1 0.5 0.0 82 132 121 171 109 199 0.77 # 573 # 1358 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.346 6_1 - 262 Fer4_NifH PF00142.13 273 6.1e-06 17.8 0.0 1 1 3.8e-07 1.2e-05 16.8 0.0 8 48 12 52 7 61 0.90 # 573 # 1358 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.346 1_10 - 252 Fer4_NifH PF00142.13 273 0.00019 13.0 0.0 1 1 2.7e-05 0.00088 10.7 0.0 12 160 65 215 61 233 0.57 # 8951 # 9706 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.361 6_4 - 246 AAA_16 PF13191.1 185 2.2e-06 20.0 0.2 1 2 0.098 6.4 -1.0 0.0 123 142 43 62 17 100 0.52 # 2625 # 3362 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.409 6_4 - 246 AAA_16 PF13191.1 185 2.2e-06 20.0 0.2 2 2 1.1e-07 7.4e-06 18.3 0.0 23 75 100 148 84 201 0.83 # 2625 # 3362 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.409 2_4 - 227 AAA_23 PF13476.1 202 0.00014 14.5 4.0 1 1 4.3e-06 0.00028 13.5 4.0 21 132 7 187 3 222 0.59 # 2003 # 2683 # 1 # ID=2_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.364 6_1 - 262 CbiA PF01656.18 195 4.1e-32 103.4 0.1 1 1 2.3e-33 4.9e-32 103.2 0.1 4 193 9 223 6 225 0.79 # 573 # 1358 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.346 1_10 - 252 CbiA PF01656.18 195 6.2e-18 57.2 0.2 1 1 4e-19 8.7e-18 56.7 0.2 9 162 63 228 55 232 0.75 # 8951 # 9706 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.361 6_4 - 246 CbiA PF01656.18 195 0.00068 11.4 0.1 1 1 0.00014 0.0029 9.3 0.1 9 35 111 137 104 172 0.90 # 2625 # 3362 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.409 6_4 - 246 KaiC PF06745.8 227 0.00037 11.9 0.0 1 1 9.4e-06 0.00061 11.2 0.0 22 68 104 149 91 204 0.80 # 2625 # 3362 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.409 6_4 - 246 AAA_14 PF13173.1 128 6.5e-07 21.6 0.0 1 2 0.046 3 0.1 0.0 99 127 13 41 2 42 0.71 # 2625 # 3362 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.409 6_4 - 246 AAA_14 PF13173.1 128 6.5e-07 21.6 0.0 2 2 7.1e-08 4.6e-06 18.9 0.0 3 96 102 201 100 221 0.67 # 2625 # 3362 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.409 2_4 - 227 AAA_29 PF13555.1 62 1.6e-05 16.7 0.0 1 1 5.4e-07 3.5e-05 15.6 0.0 26 47 8 29 2 38 0.80 # 2003 # 2683 # 1 # ID=2_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.364 6_4 - 246 CobA_CobO_BtuR PF02572.10 172 0.00069 11.6 0.0 1 2 0.0078 0.51 2.2 0.0 7 37 104 135 98 137 0.80 # 2625 # 3362 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.409 6_4 - 246 CobA_CobO_BtuR PF02572.10 172 0.00069 11.6 0.0 2 2 0.00023 0.015 7.2 0.0 94 138 160 203 144 237 0.86 # 2625 # 3362 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.409 6_4 - 246 AAA PF00004.24 132 4.7e-08 25.6 0.0 1 1 1.2e-09 7.6e-08 24.9 0.0 1 71 104 175 104 229 0.73 # 2625 # 3362 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.409 6_4 - 246 Bac_DnaA PF00308.13 219 1.5e-12 39.9 0.0 1 1 3.3e-14 2.1e-12 39.4 0.0 35 136 102 201 75 213 0.87 # 2625 # 3362 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.409 6_4 - 246 Sigma54_activat PF00158.21 168 0.00012 13.9 0.1 1 1 4.9e-05 0.0032 9.3 0.1 19 64 98 143 82 203 0.71 # 2625 # 3362 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.409 2_4 - 227 DUF258 PF03193.11 161 0.00057 11.4 0.3 1 1 9.9e-05 0.0065 8.0 0.3 36 55 6 25 1 144 0.71 # 2003 # 2683 # 1 # ID=2_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.364 5_1 - 288 NAD_binding_2 PF03446.10 163 1.2e-06 20.8 0.1 1 1 3.9e-08 2.5e-06 19.7 0.1 3 63 192 252 190 265 0.89 # 64 # 927 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 1_10 - 252 AAA_31 PF13614.1 157 2e-28 91.6 0.1 1 1 7.9e-30 2.6e-28 91.2 0.1 1 154 53 198 53 201 0.95 # 8951 # 9706 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.361 6_1 - 262 AAA_31 PF13614.1 157 6.5e-10 31.4 0.1 1 2 2.5e-07 8.2e-06 18.1 0.0 9 56 12 58 9 95 0.84 # 573 # 1358 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.346 6_1 - 262 AAA_31 PF13614.1 157 6.5e-10 31.4 0.1 2 2 3.5e-05 0.0011 11.2 0.0 109 149 114 153 112 161 0.78 # 573 # 1358 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.346 6_4 - 246 NTPase_1 PF03266.10 168 4.5e-05 15.5 0.1 1 2 0.00061 0.04 5.9 0.1 3 34 105 136 103 145 0.73 # 2625 # 3362 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.409 6_4 - 246 NTPase_1 PF03266.10 168 4.5e-05 15.5 0.1 2 2 0.0003 0.02 6.9 0.0 93 107 160 174 146 200 0.81 # 2625 # 3362 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.409 2_4 - 227 AAA_33 PF13671.1 143 1.8e-11 36.4 0.0 1 1 4e-13 2.6e-11 35.9 0.0 2 137 8 139 7 146 0.80 # 2003 # 2683 # 1 # ID=2_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.364 5_1 - 288 2-Hacid_dh_C PF02826.14 178 4.9e-08 24.6 0.1 1 2 0.0087 0.56 1.6 0.0 108 141 61 96 56 107 0.83 # 64 # 927 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 5_1 - 288 2-Hacid_dh_C PF02826.14 178 4.9e-08 24.6 0.1 2 2 1.1e-08 7.3e-07 20.8 0.1 30 95 184 250 153 266 0.80 # 64 # 927 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 3_7 - 84 AAA_30 PF13604.1 196 0.00014 13.8 0.0 1 1 2.2e-06 0.00014 13.7 0.0 47 88 11 52 3 74 0.83 # 7121 # 7372 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.452 5_1 - 288 ApbA PF02558.11 151 2.6e-06 19.2 0.2 1 1 7.4e-08 4.8e-06 18.4 0.2 1 47 193 240 193 263 0.87 # 64 # 927 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 5_1 - 288 ELFV_dehydrog PF00208.16 244 4.5e-05 15.4 0.3 1 2 0.06 3.9 -0.8 0.0 68 106 104 142 91 166 0.58 # 64 # 927 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 5_1 - 288 ELFV_dehydrog PF00208.16 244 4.5e-05 15.4 0.3 2 2 2.5e-06 0.00016 13.6 0.1 28 63 186 220 172 274 0.85 # 64 # 927 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 2_4 - 227 ABC_tran PF00005.22 137 2.4e-05 17.0 1.2 1 1 8.6e-07 5.6e-05 15.8 1.2 12 80 6 118 2 221 0.72 # 2003 # 2683 # 1 # ID=2_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.364 5_1 - 288 THF_DHG_CYH_C PF02882.14 161 3.8e-06 18.4 0.2 1 2 0.034 2.2 -0.4 0.0 85 112 85 112 63 127 0.79 # 64 # 927 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 5_1 - 288 THF_DHG_CYH_C PF02882.14 161 3.8e-06 18.4 0.2 2 2 3.6e-07 2.4e-05 15.8 0.0 26 77 180 230 177 259 0.92 # 64 # 927 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 5_1 - 288 UDPG_MGDP_dh_N PF03721.9 185 0.00027 12.6 0.5 1 1 9.5e-06 0.00061 11.5 0.5 2 38 192 228 191 249 0.82 # 64 # 927 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 6_4 - 246 RuvB_N PF05496.7 234 0.00035 11.9 0.1 1 1 1.6e-05 0.001 10.4 0.1 48 74 99 125 76 188 0.68 # 2625 # 3362 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.409 6_4 - 246 AAA_19 PF13245.1 76 8.6e-05 14.6 0.1 1 1 3.6e-06 0.00023 13.2 0.0 12 50 105 137 96 146 0.83 # 2625 # 3362 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.409 5_1 - 288 NAD_binding_10 PF13460.1 183 2.3e-06 20.0 0.0 1 1 6.5e-08 4.2e-06 19.1 0.0 1 74 193 260 193 274 0.86 # 64 # 927 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 6_1 - 262 SPOUT_MTase_2 PF14419.1 174 0.00014 13.3 0.0 1 2 2.6e-05 0.0017 9.8 0.0 74 119 15 60 9 70 0.90 # 573 # 1358 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.346 6_1 - 262 SPOUT_MTase_2 PF14419.1 174 0.00014 13.3 0.0 2 2 0.016 1 0.8 0.0 143 167 125 151 118 165 0.75 # 573 # 1358 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.346 5_1 - 288 DAO PF01266.19 358 0.00017 12.8 0.4 1 1 3.7e-06 0.00024 12.3 0.4 1 33 192 224 192 244 0.91 # 64 # 927 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 6_4 - 246 ResIII PF04851.10 184 0.00027 13.1 0.1 1 1 1.4e-05 0.00088 11.4 0.0 22 58 95 136 40 154 0.76 # 2625 # 3362 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.409 6_4 - 246 Zot PF05707.7 193 8.5e-06 17.6 0.0 1 1 3.6e-07 2.4e-05 16.2 0.0 4 47 105 148 104 175 0.73 # 2625 # 3362 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.409 5_1 - 288 FMO-like PF00743.14 532 0.00029 11.4 0.0 1 1 5.9e-06 0.00038 10.9 0.0 181 228 188 234 178 280 0.84 # 64 # 927 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 1_10 - 252 ParA PF10609.4 81 1.6e-05 17.1 1.2 1 1 5.1e-07 3.3e-05 16.1 0.6 2 62 163 222 162 226 0.90 # 8951 # 9706 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.361 6_4 - 246 RNA_helicase PF00910.17 107 2.3e-05 16.9 0.0 1 1 1.1e-06 7.4e-05 15.2 0.0 2 78 105 189 104 203 0.89 # 2625 # 3362 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.409 5_1 - 288 TrkA_N PF02254.13 116 1.5e-07 23.8 1.2 1 1 3.8e-09 2.5e-07 23.0 0.4 1 44 193 236 193 263 0.84 # 64 # 927 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 5_1 - 288 IlvN PF07991.7 165 8.5e-08 24.0 0.0 1 1 2.4e-09 1.5e-07 23.2 0.0 2 53 188 238 187 285 0.84 # 64 # 927 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 5_1 - 288 AlaDh_PNT_C PF01262.16 168 7.3e-05 14.7 0.3 1 2 0.091 5.9 -1.3 0.0 117 139 58 80 57 92 0.79 # 64 # 927 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 5_1 - 288 AlaDh_PNT_C PF01262.16 168 7.3e-05 14.7 0.3 2 2 3.9e-06 0.00025 12.9 0.1 21 57 191 227 172 249 0.86 # 64 # 927 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 6_4 - 246 NACHT PF05729.7 166 0.00042 12.3 0.1 1 1 3.5e-05 0.0023 9.9 0.1 3 44 104 139 102 220 0.86 # 2625 # 3362 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.409 6_4 - 246 AAA_25 PF13481.1 194 4.8e-06 18.4 0.0 1 1 1.4e-07 9e-06 17.5 0.0 30 149 98 223 73 233 0.63 # 2625 # 3362 # -1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.409 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/ea59ac65-448e-40c0-8417-9649b29c8d7e # Target file: checkm_output/bins/pGCA_000298115.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000298115.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ea59ac65-448e-40c0-8417-9649b29c8d7e checkm_output/bins/pGCA_000298115.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:40:44 2020 # [ok]